View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3767_low_32 (Length: 236)
Name: NF3767_low_32
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 35057637 - 35057435
Alignment:
| Q |
23 |
ctgtttttactatgatcttaatgtcgtgattttagagttattttatttcaaatgttaataaaaaattaacgccatccaaaaatgaagtttcccaaaattt |
122 |
Q |
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| T |
35057637 |
ctgtttttactatgatcttaatgtcgtgattttagagttattttatttcaaatgttaataaaaaattaacgccatccaaaaatgaagtttcccaaaattt |
35057538 |
T |
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| Q |
123 |
actgaccttgccttannnnnnncacctcataaacggtttttatgcaagtgactctttcaaaagctgaatttttcataaaatattagaatatgtcttgccc |
222 |
Q |
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| T |
35057537 |
actgaccttgccttatttttttcacctcataaacggtttttatgcaagtgactctttcaaaagctgaatttttcataaaatattagaatatgtcttgccc |
35057438 |
T |
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| Q |
223 |
tat |
225 |
Q |
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||| |
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| T |
35057437 |
tat |
35057435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 110 - 225
Target Start/End: Complemental strand, 43017657 - 43017542
Alignment:
| Q |
110 |
tttcccaaaatttactgaccttgccttannnnnnncacctcataaacggtttttatgcaagtgactctttcaaaagctgaatttttcataaaatattaga |
209 |
Q |
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||||||||||||||| | |||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43017657 |
tttcccaaaatttacaggccttgccttatttttctcacctgataaacgggttttatgcaagtgactctttcaaaagctgaatttttcataaaatattaga |
43017558 |
T |
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| Q |
210 |
atatgtcttgccctat |
225 |
Q |
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||| |||||||||||| |
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| T |
43017557 |
ataagtcttgccctat |
43017542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 43017759 - 43017679
Alignment:
| Q |
24 |
tgtttttactatgatcttaatgtcgtgattttagagttattttatttcaaatgttaataaaaaattaacgccatccaaaaat |
105 |
Q |
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||||| ||||||||||||||||| |||| |||||||||||||||||||||| ||||||| ||||| || || |||||||||| |
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| T |
43017759 |
tgtttatactatgatcttaatgttgtgaatttagagttattttatttcaaaagttaata-aaaatcaaggctatccaaaaat |
43017679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 38569811 - 38569754
Alignment:
| Q |
51 |
attttagagttattttatttcaaatgttaataaaaaattaacgccatccaaaaatgaa |
108 |
Q |
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|||||||||||||||||||||||| |||| ||||||| ||| || ||||||||||||| |
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| T |
38569811 |
attttagagttattttatttcaaaagttagtaaaaaaataaggctatccaaaaatgaa |
38569754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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