View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3767_low_34 (Length: 229)
Name: NF3767_low_34
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_low_34 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 6186111 - 6186322
Alignment:
| Q |
18 |
agtattgctttttctgttggacttcctgaaaactcaaattcagaatccgaacctgttttcgatttgtgaacatcaccagttgtattgagagcaactcctt |
117 |
Q |
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| T |
6186111 |
agtattgctttttctgttggacttcctgaaaactcaaattcagaatccgaacctgttttcgatttgtgagcatcaccagttgtattgagagcaactcctt |
6186210 |
T |
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| Q |
118 |
ctttgatcaattgaagaacagatggatcaacattggaatatgcacctccttccaatggttcaaaaccgagccaaaactttgtcaccttcatctgattcaa |
217 |
Q |
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| T |
6186211 |
ctttgatcaattgaagaacagatggatcaacattggaatatgcaccttcttccaatggttcaaaaccgagccaaaactttgtcaccttcatctgattcaa |
6186310 |
T |
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| Q |
218 |
agtaagtgtacc |
229 |
Q |
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|||||||||||| |
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| T |
6186311 |
agtaagtgtacc |
6186322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 4237018 - 4237226
Alignment:
| Q |
18 |
agtattgctttttctgttggacttcctgaaaactcaaattcagaatccgaacctgttttcgatttgtgaacatcaccagttgtattgagagcaactcctt |
117 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |||| ||||||||||| |||||||||||||||||| |||||||| |
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| T |
4237018 |
agtattgctttttctgttggactaccagaaaactcaaattcagaatcagaacctgatttcaatttgtgaacaccaccagttgtattgagagaaactcctt |
4237117 |
T |
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| Q |
118 |
ctttgatcaattgaagaacagatggatcaacattggaatatgcacctccttccaatggttcaaaaccgagccaaaactttgtcaccttcatctgattcaa |
217 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||| ||| |||||| |||||| ||||| ||||||||||||||||||||||| ||||||| |
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| T |
4237118 |
ctttgatcaattgaagaacaaatggatcaacatttgaatatgtaccaacttccattggttctaaaccaagccaaaactttgtcaccttcatttgattcat |
4237217 |
T |
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| Q |
218 |
agtaagtgt |
226 |
Q |
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| T |
4237218 |
agtgagtgt |
4237226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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