View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3767_low_4 (Length: 481)
Name: NF3767_low_4
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 370
Target Start/End: Complemental strand, 45039175 - 45038824
Alignment:
| Q |
19 |
cgaagtgtttcgaggcttcttcgaatttgacccttgtttagctgttgatgatgacaaaggcaaagaatcatgatgttgttcagttcttggtattgataat |
118 |
Q |
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| T |
45039175 |
cgaagtgtttcgaggcttcttcgaattcgacccttggttagctgttgatgatgacaaaggcaaagaatcatgatgttgttcagttgttggtattgataat |
45039076 |
T |
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| Q |
119 |
gagttggttggcatttcttcagcatattgtgacacattgatggatgagttgtttactaggtcagttgtggcaataggaacactgaattgatcttgtggaa |
218 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45039075 |
gagttggttggcatttcttcagcatgttgtgacacattgatggatgagttgtttactaggtcagttgtggcaataggaacattgaattgatcttgtggaa |
45038976 |
T |
|
| Q |
219 |
tctgatacaggatatctctgaggaactcttcatcaaatgtgttgtttgtgtgacacaaatgttcttccatttcctaagaacgattcatttgtaaaacaat |
318 |
Q |
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| T |
45038975 |
tctgatacaggatatctctgaggaactcttcgtcaaatgtgttgtttgtgtgacacaaatgttcttccatttcctaagaacgattcatttgtaaaacaat |
45038876 |
T |
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| Q |
319 |
aattaatcaagtggtagtttttatagatagtggaggagttcatacaatgatc |
370 |
Q |
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| T |
45038875 |
aattaatcaagtggtagtttttatagatagtggaggagttcatacaatgatc |
45038824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 27 - 370
Target Start/End: Complemental strand, 45064805 - 45064452
Alignment:
| Q |
27 |
ttcgaggcttcttcgaatttgacccttgtttagctgt--tgatgatgacaaaggcaaagaatcatgatgttgttcagttcttggtattgataatgagttg |
124 |
Q |
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| T |
45064805 |
ttcgaggcttcttcgaatttgacccttgtttagtcgcgctgatgatgacaaaggcaaataatcttgatgttgagcagttgttggtattgatactgagctg |
45064706 |
T |
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| Q |
125 |
gttggcatttcttcagcatattg---------tgacacattgatggatgagttgtttactaggtcagttgtggcaataggaacactgaattgatcttgtg |
215 |
Q |
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||| || |||||| ||||| ||| ||||||| |||| ||||||||||| |||||| ||| |||||||||||| ||||||||||||||||||| |
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| T |
45064705 |
gttagcttttctttagcatgttgagttgaatgtgacacaatgatcgatgagttgttgactaggccagctgtggcaatagggacactgaattgatcttgtg |
45064606 |
T |
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| Q |
216 |
gaatctgatacaggatatctctgaggaactcttcatcaaatgtgttgtttgtgtgacacaaatgttcttccatttcctaagaacgattcatttgtaaaac |
315 |
Q |
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| T |
45064605 |
gtgtctgattcatgatatcctttaggaactcttcatcaaatatgttattggggtgacttaaacattcttccattttctaagaacgaataatttgtaaaac |
45064506 |
T |
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| Q |
316 |
aataattaatcaagtggtagtttttatagatagtggaggagttcatacaatgatc |
370 |
Q |
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||||| |||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
45064505 |
aataactaatcaagtggtagtttttatagatagt-gatgagttcatacaatgatc |
45064452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 204 - 360
Target Start/End: Original strand, 45083625 - 45083781
Alignment:
| Q |
204 |
attgatcttgtggaatctgatacaggatatctctgaggaactcttcatcaaatgtgttgtttgtgtgacacaaatgttcttccatttcctaagaacgatt |
303 |
Q |
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| T |
45083625 |
attgatcttgtggtgtctgattcaggatatccttgaggaactcttcatcaaatatgttgtttgtgtgacttaaacattcttccatttcctaagaatgaat |
45083724 |
T |
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| Q |
304 |
catttgtaaaacaataattaatcaagtggtagtttttatagatagtggaggagttca |
360 |
Q |
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| T |
45083725 |
aatttgtaaaacaataattaatcaagtggtggtttttatagttagtggaggagttca |
45083781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 434 - 475
Target Start/End: Complemental strand, 45038760 - 45038719
Alignment:
| Q |
434 |
gacttgttgtttgtactaccaaatcataagaccaattgcccc |
475 |
Q |
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| T |
45038760 |
gacttgttgtttgtactaccaaatcataagaccaattgcccc |
45038719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 45083481 - 45083521
Alignment:
| Q |
63 |
ttgatgatgacaaaggcaaagaatcatgatgttgttcagtt |
103 |
Q |
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| T |
45083481 |
ttgatgatgacaaaggcaaagaatcatggtgctattcagtt |
45083521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 146 - 366
Target Start/End: Complemental strand, 29375684 - 29375464
Alignment:
| Q |
146 |
tgtgacacattgatggatgagttgtttactaggtcagttgtggcaataggaacactgaattgatcttgtggaatctgatacaggatatctctgaggaact |
245 |
Q |
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|||||||||||| ||||||||||||| | |||| | |||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
29375684 |
tgtgacacattggtggatgagttgttgaataggcccgttgtggcaatagggacactaaattgatcttgtggtgtctgatataggatatctctgaggaact |
29375585 |
T |
|
| Q |
246 |
cttcatcaaatgtgttgtttgtgtgacacaaatgttcttccatttcctaagaacgattcatttgtaaaacaataattaatcaagtggtagtttttataga |
345 |
Q |
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||||||||||||||||||| |||||||||||| |||||||||||||||||| | |||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
29375584 |
cttcatcaaatgtgttgttggtgtgacacaaacattcttccatttcctaagagcaattcatttgtaaaatcataattaatcaagtgtcagtttttatagt |
29375485 |
T |
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| Q |
346 |
tagtggaggagttcatacaat |
366 |
Q |
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||| ||||||||||||||||| |
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| T |
29375484 |
tagaggaggagttcatacaat |
29375464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 29375853 - 29375781
Alignment:
| Q |
31 |
aggcttcttcgaatttgacccttgtttagctgttgatgatgacaaaggcaaagaatcatgatgttgttcagtt |
103 |
Q |
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||||||||| ||||| |||||||| |||| ||||||| |||||||||||||||||||| |||||||||||| |
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| T |
29375853 |
aggcttctttgaattcgacccttggctagccattgatgacgacaaaggcaaagaatcatggtgttgttcagtt |
29375781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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