View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3767_low_5 (Length: 451)

Name: NF3767_low_5
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3767_low_5
NF3767_low_5
[»] chr6 (65 HSPs)
chr6 (20-294)||(4256151-4256424)
chr6 (20-294)||(4259681-4259967)
chr6 (20-294)||(4461442-4461728)
chr6 (93-294)||(4622547-4622745)
chr6 (93-294)||(4299348-4299548)
chr6 (20-291)||(4585955-4586238)
chr6 (20-294)||(4626270-4626556)
chr6 (100-282)||(4516733-4516914)
chr6 (93-294)||(4564116-4564316)
chr6 (93-294)||(4613245-4613445)
chr6 (93-294)||(4598576-4598776)
chr6 (93-294)||(4602194-4602394)
chr6 (20-294)||(4579751-4580037)
chr6 (115-294)||(4489882-4490060)
chr6 (115-294)||(4503924-4504102)
chr6 (20-294)||(4557444-4557730)
chr6 (93-294)||(3172146-3172346)
chr6 (93-294)||(4571377-4571577)
chr6 (115-294)||(4470230-4470408)
chr6 (115-294)||(4560932-4561109)
chr6 (93-294)||(4514648-4514848)
chr6 (93-294)||(4617427-4617627)
chr6 (115-291)||(4506284-4506459)
chr6 (115-294)||(4574735-4574913)
chr6 (97-294)||(4266693-4266889)
chr6 (93-294)||(4592636-4592836)
chr6 (115-294)||(4481120-4481298)
chr6 (297-368)||(4255387-4255458)
chr6 (100-282)||(4458006-4458188)
chr6 (299-368)||(4258742-4258811)
chr6 (297-368)||(4623798-4623869)
chr6 (378-439)||(4254934-4254995)
chr6 (297-370)||(4558616-4558689)
chr6 (93-215)||(4568461-4568580)
chr6 (297-360)||(4612292-4612355)
chr6 (297-360)||(4618792-4618855)
chr6 (299-360)||(4507404-4507465)
chr6 (297-370)||(4572457-4572530)
chr6 (297-371)||(4581505-4581579)
chr6 (297-363)||(4627641-4627707)
chr6 (297-358)||(4603601-4603662)
chr6 (297-364)||(4471405-4471472)
chr6 (313-360)||(4513553-4513600)
chr6 (300-364)||(4265627-4265691)
chr6 (297-360)||(3173494-3173557)
chr6 (297-343)||(4569561-4569607)
chr6 (299-357)||(4587125-4587183)
chr6 (297-366)||(4575946-4576015)
chr6 (300-364)||(4462701-4462765)
chr6 (297-360)||(4565520-4565583)
chr6 (297-360)||(4594501-4594564)
chr6 (300-366)||(4497813-4497879)
chr6 (297-363)||(4517831-4517897)
chr6 (20-69)||(4470122-4470171)
chr6 (300-364)||(4488767-4488831)
chr6 (20-88)||(4622461-4622529)
chr6 (20-67)||(4299587-4299634)
chr6 (311-366)||(4482370-4482425)
chr6 (20-79)||(4592550-4592609)
chr6 (20-90)||(4560825-4560895)
chr6 (20-90)||(4574627-4574697)
chr6 (20-90)||(4613461-4613531)
chr6 (20-69)||(4568375-4568424)
chr6 (378-429)||(4258274-4258326)
chr6 (316-360)||(4493415-4493459)
[»] chr7 (2 HSPs)
chr7 (20-294)||(3086739-3087025)
chr7 (297-370)||(3088236-3088309)
[»] scaffold0477 (1 HSPs)
scaffold0477 (20-294)||(4213-4499)
[»] scaffold0288 (2 HSPs)
scaffold0288 (20-294)||(3246-3532)
scaffold0288 (297-360)||(2025-2088)
[»] chr8 (5 HSPs)
chr8 (93-294)||(1674631-1674831)
chr8 (93-293)||(16685795-16685994)
chr8 (93-282)||(20863382-20863570)
chr8 (297-359)||(1676012-1676074)
chr8 (297-373)||(20862371-20862447)
[»] chr3 (2 HSPs)
chr3 (97-294)||(1281523-1281719)
chr3 (297-360)||(1282924-1282987)
[»] chr5 (5 HSPs)
chr5 (97-294)||(24103408-24103604)
chr5 (378-439)||(24093152-24093213)
chr5 (93-174)||(27999745-27999826)
chr5 (300-364)||(24104589-24104653)
chr5 (233-270)||(24106974-24107011)
[»] scaffold0475 (2 HSPs)
scaffold0475 (297-366)||(2315-2384)
scaffold0475 (121-167)||(3162-3208)
[»] scaffold0199 (2 HSPs)
scaffold0199 (297-359)||(1249-1311)
scaffold0199 (233-294)||(7-68)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 65)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 4256424 - 4256151
Alignment:
Q  20 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacaccaacccgcgattggtcctctatccgaaactcagatgacaaaataaaggagcc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||    
T  4256424 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacaccaactctcgattagtcctctatccgaaactcagatgacaaaataaaggagcc 4256325  T
Q  120 accaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaacagttgatctggagtcataactgtg 219  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4256324 accaatgacgaggtcaggcctaatgatacacaaaaatggtttcttgctattggccaatccccaagcaaactctaacagttgatctggagtcataactgta 4256225  T
Q  220 atgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttc 294  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4256224 atgctgccaaaa-ttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttc 4256151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 4259967 - 4259681
Alignment:
Q  20 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacaccaacccgcgattggtcctctatccgaaa-------------ctcagatgaca 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||             |||||||||||    
T  4259967 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacaccagctcgcgattaggcctctatccgaaatttcactctcaaactcagatgaca 4259868  T
Q  107 aaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaacagttgatctgg 206  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||    
T  4259867 aaataaaggagccaccaataatgaggtcaggcctaatgatccacaaaaagggtttcttgctattggccaatccccaagcaaactctaaaaattgatctgg 4259768  T
Q  207 agtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttc 294  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||    
T  4259767 agtcataactgtaatgctgccaaaa-ttcacgtaaacaacagactcaggttccttaaattcaagccattcaagacatttggtatcttc 4259681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 4461442 - 4461728
Alignment:
Q  20 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacaccaacccgcgattggtcctctatccgaaa-------------ctcagatgaca 106  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||| |  || ||| | |||||||| ||||             |||||||||||    
T  4461442 aagaatccaccaattgaagggtggttcagtacttgctcttgcggacaccagcttgctattaggcctctatctgaaatttcattcacaaactcagatgaca 4461541  T
Q  107 aaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaacagttgatctgg 206  Q
    ||||||| ||||| |||||||| || ||||||||||||||||| ||||| |||||||||||||  ||||| |||||||||||||||||||||||||| ||    
T  4461542 aaataaacgagccgccaatgacaagatcaggcctaatgatccataaaaagggtttcttgctatcagccaaaccccaagcaaactctaacagttgatcagg 4461641  T
Q  207 agtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttc 294  Q
    |||||||||||||||||||||||||||| || || ||||||||  | ||||| || |||||||||||||||||||| || ||||||||    
T  4461642 agtcataactgtgatgctgccaaaattt-acatagacaacagatcctggttcttttgattcaagccattcaagacatttagtatcttc 4461728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 93 - 294
Target Start/End: Original strand, 4622547 - 4622745
Alignment:
Q  93 aaactcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactct 192  Q
    ||||||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||||| |||||||||||||  ||||| |||||||||||||||    
T  4622547 aaactcagatgacaaaataaacgagccgcccatgacaaggtcaggcctaatgatccacaaaaagggtttcttgctatcagccaaaccccaagcaaactct 4622646  T
Q  193 aacagttgatctggagtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatct 292  Q
    || ||||||||| ||||||| ||||| |||||||||||| ||||||||||||  ||| ||||||||||||||||||||||| |||||||||||| |||||    
T  4622647 aatagttgatctcgagtcatcactgtaatgctgccaaaa-ttcacgtaaaca--agagtcaggttccttggattcaagccactcaagacacttgatatct 4622743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 93 - 294
Target Start/End: Complemental strand, 4299548 - 4299348
Alignment:
Q  93 aaactcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactct 192  Q
    |||||||||||||||||||||  |||| |||||||| ||||| ||||||||||||||||||||||||||| ||| ||||||||| |||||||||| ||||    
T  4299548 aaactcagatgacaaaataaacaagccgccaatgacaaggtctggcctaatgatccacaaaaatggtttcctgcaattggccaaaccccaagcaatctct 4299449  T
Q  193 aacagttgatctggagtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatct 292  Q
    |||||||| ||||||||||||||||| | |||||||||| ||||| |||||||| ||  | || |||||||||||||||||||||||||| |||||||||    
T  4299448 aacagttgctctggagtcataactgtaacgctgccaaaa-ttcacataaacaaccgatcccggctccttggattcaagccattcaagacatttggtatct 4299350  T
Q  293 tc 294  Q
    ||    
T  4299349 tc 4299348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 20 - 291
Target Start/End: Original strand, 4585955 - 4586238
Alignment:
Q  20 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacaccaacccgcgattggtcctctatccgaaa-------------ctcagatgaca 106  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||| ||||||||||||||| | |||||||| ||||             |||||||||||    
T  4585955 aagaatccaccaattgaagggtggttcaatacttgctcttgcgggcaccaacccgcgattaggcctctatctgaaatttcattcttaaactcagatgaca 4586054  T
Q  107 aaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaacagttgatctgg 206  Q
    |||  ||||| ||||||||||| || ||||| ||||||||||| |||||  ||| ||||||||||||||| ||||||||||||||||| ||||  ||||     
T  4586055 aaaccaaggaaccaccaatgacaagatcaggtctaatgatccataaaaaatgttgcttgctattggccaaaccccaagcaaactctaatagtttttctgt 4586154  T
Q  207 agtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatc 291  Q
    ||||||||||||  |||| |||||| ||||| |||||||| |||   |||||||| ||||||||||| |||||||||||||||||    
T  4586155 agtcataactgttgtgctcccaaaa-ttcacataaacaacggacctcggttcctttgattcaagccaatcaagacacttggtatc 4586238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 4626270 - 4626556
Alignment:
Q  20 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacaccaacccgcgattggtcctctatccgaaa-------------ctcagatgaca 106  Q
    ||||||||||||| |||||  ||||||||||||| ||||||||||||||| |  |||||| | |||||||| ||||             ||| ||||||     
T  4626270 aagaatccaccaattgaaggatggttcagtactttctcttgcggacaccagcttgcgattaggcctctatctgaaatttcattctcaaactcggatgacg 4626369  T
Q  107 aaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaacagttgatctgg 206  Q
    ||||||| ||||||||||| || || ||||||||||||||||||||||| |||||||||||||  ||||| ||||||||||||||||||||||  | |||    
T  4626370 aaataaatgagccaccaatcacaagatcaggcctaatgatccacaaaaagggtttcttgctatcagccaaaccccaagcaaactctaacagtttctgtgg 4626469  T
Q  207 agtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttc 294  Q
    |||||||||| | | |||||| ||| ||||| |||||||||||||  ||||||||| ||||||||||||||||||| ||||| |||||    
T  4626470 agtcataactataacgctgcc-aaagttcacataaacaacagactttggttccttgaattcaagccattcaagacaattggtgtcttc 4626556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 100 - 282
Target Start/End: Original strand, 4516733 - 4516914
Alignment:
Q  100 gatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaacagtt 199  Q
    |||||||||||||  |||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||    
T  4516733 gatgacaaaataaccgagccaccaatgacaaggtcaggcctaataatccacaaaaaaggtttcttgctgttggccaaaccccaagcgaactctaacagtt 4516832  T
Q  200 gatctggagtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagaca 282  Q
    ||||||||||||| || |||||||| |||||| ||||| ||||| |||||  |  ||||||| ||||||||||||||||||||    
T  4516833 gatctggagtcatgaccgtgatgcttccaaaa-ttcacataaactacagaaccttgttccttagattcaagccattcaagaca 4516914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 93 - 294
Target Start/End: Original strand, 4564116 - 4564316
Alignment:
Q  93 aaactcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactct 192  Q
    |||||||||||||||||  |  |||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||||||| ||     
T  4564116 aaactcagatgacaaaacgactgagccaccaatgacaaggtcaggcctaatgatccacaaaaagggtttattgcaattggccaacccccaagcaaattcc 4564215  T
Q  193 aacagttgatctggagtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatct 292  Q
    |||||||| | ||| ||||||||||| ||||| |||||| ||||| |||||||| ||  | || ||||||||||||||||||||||||||||| ||||||    
T  4564216 aacagttgttttggtgtcataactgtaatgcttccaaaa-ttcacataaacaacggatcccggctccttggattcaagccattcaagacacttagtatct 4564314  T
Q  293 tc 294  Q
    ||    
T  4564315 tc 4564316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 93 - 294
Target Start/End: Complemental strand, 4613445 - 4613245
Alignment:
Q  93 aaactcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactct 192  Q
    |||||| |||||||||| ||  ||||| |||||||| || ||||||||||||||||||||||| |||| ||||||||| ||||| |||||||||||||||    
T  4613445 aaactctgatgacaaaacaactgagccgccaatgacaagatcaggcctaatgatccacaaaaagggttgcttgctattcgccaaaccccaagcaaactct 4613346  T
Q  193 aacagttgatctggagtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatct 292  Q
    || ||||  |||| ||||||||| || ||||| |||||| ||||| |||||||| ||||  |||||||||||||||||||| ||||||||||||||||||    
T  4613345 aatagtttttctgcagtcataacggtcatgctcccaaaa-ttcacataaacaacggacttcggttccttggattcaagccaatcaagacacttggtatct 4613247  T
Q  293 tc 294  Q
    ||    
T  4613246 tc 4613245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 93 - 294
Target Start/End: Original strand, 4598576 - 4598776
Alignment:
Q  93 aaactcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactct 192  Q
    |||||| |||||||||| ||  |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||    
T  4598576 aaactccgatgacaaaacaaccgagccaccaatgacaagatcaggcctaatgatccacaaaaagggtttcttgctattggccaaaccccaagcaaagtct 4598675  T
Q  193 aacagttgatctggagtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatct 292  Q
    ||||  |  |||| |||||| || || ||||| |||||| ||||| ||||||||||||   ||||| |||||||||||||| ||||||||||||||||||    
T  4598676 aacaacttttctgcagtcatcaccgttatgctcccaaaa-ttcacataaacaacagaccttggttcattggattcaagccagtcaagacacttggtatct 4598774  T
Q  293 tc 294  Q
    ||    
T  4598775 tc 4598776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 93 - 294
Target Start/End: Original strand, 4602194 - 4602394
Alignment:
Q  93 aaactcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactct 192  Q
    |||||||||||||||||| |  |||||||||||||| || ||||||||||||||||||||||||||||| | || ||||||||| |||||||| || |||    
T  4602194 aaactcagatgacaaaatcactgagccaccaatgacaagatcaggcctaatgatccacaaaaatggtttatggcaattggccaaaccccaagcgaattct 4602293  T
Q  193 aacagttgatctggagtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatct 292  Q
    || | |||||  || ||||||||||| |||||||||||| ||||| |||||||| ||  | || ||||||||||||||||||||||||||||  ||||||    
T  4602294 aataattgatggggtgtcataactgtaatgctgccaaaa-ttcacataaacaacggatcccggctccttggattcaagccattcaagacactcagtatct 4602392  T
Q  293 tc 294  Q
    ||    
T  4602393 tc 4602394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 4579751 - 4580037
Alignment:
Q  20 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacaccaacccgcgattggtcctctatccgaaa-------------ctcagatgaca 106  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||| | ||  ||| | |||||||| ||||             ||| |||||||    
T  4579751 aagaatccaccaattgaagggtggttcagtacttgctcttgcggacaccagctcgttattaggcctctatctgaaatttcattcacaaactccgatgaca 4579850  T
Q  107 aaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaacagttgatctgg 206  Q
    ||| |   ||||| || ||||| || || |||||||||||||||||||| |||| ||||||||| || || ||||| ||||||||||||||||  ||||     
T  4579851 aaacagctgagccgccgatgacaagatcgggcctaatgatccacaaaaagggttgcttgctatttgctaaaccccatgcaaactctaacagtttttctgc 4579950  T
Q  207 agtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttc 294  Q
    |||||||||||| | ||| |||||| ||||| ||||||||||||  ||||||||||||||||||||| | ||||||||||||||||||    
T  4579951 agtcataactgtcaagctcccaaaa-ttcacataaacaacagacctaggttccttggattcaagccaataaagacacttggtatcttc 4580037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 115 - 294
Target Start/End: Complemental strand, 4490060 - 4489882
Alignment:
Q  115 gagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaacagttgatctggagtcataa 214  Q
    ||||||||||| || || ||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||| || |  ||| ||| |||||    
T  4490060 gagccaccaataacaagatcaggcctaatgatccacaaaaagggtttcttgctgttggccaaaccccatgcaaactctaatagcttctctcgagacataa 4489961  T
Q  215 ctgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttc 294  Q
    | |||||||||||||||||| || |||||||||||  | ||||| || |||||||||||||||||||| || ||||||||    
T  4489960 cagtgatgctgccaaaattt-acataaacaacagatcctggttcttttgattcaagccattcaagacatttagtatcttc 4489882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 115 - 294
Target Start/End: Complemental strand, 4504102 - 4503924
Alignment:
Q  115 gagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaacagttgatctggagtcataa 214  Q
    ||||||||||| || || ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||| || ||||  || |||||    
T  4504102 gagccaccaataacaagatcaggcctaataatccacaaaaaaggtttcttgctattggccaaaccccaagcaaactctaacaatttatcttaagacataa 4504003  T
Q  215 ctgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttc 294  Q
    |||| ||||||||||||||| || |||||||||||  | ||||| ||  |||||||||| |||||||| || ||||||||    
T  4504002 ctgtaatgctgccaaaattt-acataaacaacagatcctggttcttttaattcaagccaatcaagacatttagtatcttc 4503924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 4557444 - 4557730
Alignment:
Q  20 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacaccaacccgcgattggtcctctatccgaaa-------------ctcagatgaca 106  Q
    ||||||||||||| |||||  ||||| | ||||||||||||||| ||||| ||||||||| | |||||||| ||||             ||| |||||||    
T  4557444 aagaatccaccaattgaaggatggtttaatacttgctcttgcgggcaccagcccgcgattaggcctctatctgaaatttcattgacaaactccgatgaca 4557543  T
Q  107 aaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaacagttgatctgg 206  Q
    ||| ||  |||||||| ||||| || || |||||||||||||||||||| |||| ||||||||| || || ||||| ||||||||||||||||  ||||     
T  4557544 aaacaactgagccaccgatgacaagatcgggcctaatgatccacaaaaagggttgcttgctatttgctaaaccccatgcaaactctaacagtttttctgc 4557643  T
Q  207 agtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttc 294  Q
     ||||||||||| ||||| |||||| ||||| |||||||| |||   ||||||||||||||||||||  ||||||||||| |||||||    
T  4557644 cgtcataactgtcatgctcccaaaa-ttcacataaacaacggacctcggttccttggattcaagccaaccaagacacttgttatcttc 4557730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 93 - 294
Target Start/End: Original strand, 3172146 - 3172346
Alignment:
Q  93 aaactcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactct 192  Q
    |||||| |||||||||| ||  |||||||||||||| || ||||||||||| ||||||||||| ||||||||||| ||||| || |||||||||||||||    
T  3172146 aaactccgatgacaaaacaaccgagccaccaatgacaagatcaggcctaataatccacaaaaagggtttcttgctgttggctaaaccccaagcaaactct 3172245  T
Q  193 aacagttgatctggagtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatct 292  Q
    || | ||  ||| ||| ||||||| ||||||||||||||||| || ||||||||||| |  | ||| || | |||||||||||||||||| || ||||||    
T  3172246 aataatttctcttgagacataactatgatgctgccaaaattt-acataaacaacagattttgattcttttgtttcaagccattcaagacatttagtatct 3172344  T
Q  293 tc 294  Q
    ||    
T  3172345 tc 3172346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 93 - 294
Target Start/End: Original strand, 4571377 - 4571577
Alignment:
Q  93 aaactcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactct 192  Q
    |||||| |||||||||| ||  |||||||||||||| || || ||||||||||||||||||||  ||| ||||||||| || || ||||| |||||||||    
T  4571377 aaactccgatgacaaaacaactgagccaccaatgacaagatcgggcctaatgatccacaaaaagagttgcttgctatttgctaaaccccatgcaaactct 4571476  T
Q  193 aacagttgatctggagtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatct 292  Q
    |||||||  |||| ||||||||||||  |||| |||||| ||||| |||||||| |||   |||||||| ||||||||||| |||||||||||| |||||    
T  4571477 aacagtttttctgaagtcataactgtcctgctcccaaaa-ttcacataaacaacggacctcggttcctttgattcaagccaatcaagacacttgttatct 4571575  T
Q  293 tc 294  Q
    ||    
T  4571576 tc 4571577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 115 - 294
Target Start/End: Original strand, 4470230 - 4470408
Alignment:
Q  115 gagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaacagttgatctggagtcataa 214  Q
    ||||| |||||||| || || |||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||||||||||||  ||||||| |||||    
T  4470230 gagccgccaatgacaagatcgggcctaatgatccacaaaaagggttgcttgctatttgccaaaccccaagcaaactctaacagtttctctggagacataa 4470329  T
Q  215 ctgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttc 294  Q
    |||||| |||||| |||||| || || ||||||||  | ||||| || ||||||||||| |||||||| || ||||||||    
T  4470330 ctgtgacgctgccgaaattt-acatagacaacagatcctggttcttttgattcaagccactcaagacatttagtatcttc 4470408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 115 - 294
Target Start/End: Original strand, 4560932 - 4561109
Alignment:
Q  115 gagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaacagttgatctggagtcataa 214  Q
    |||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||  | |  ||| ||| | |||    
T  4560932 gagccaccaatgacaagatcaggcctaatgatccataaaaatggtttcttgctgttggccaaaccccaagcaaactctaa-ggcttctcttgagacttaa 4561030  T
Q  215 ctgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttc 294  Q
    | |||||||||||||||||| || |||||||||||  | ||||| || |||||||||||||||||||| || ||||||||    
T  4561031 cagtgatgctgccaaaattt-acataaacaacagatcctggttcttttgattcaagccattcaagacatttagtatcttc 4561109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 93 - 294
Target Start/End: Complemental strand, 4514848 - 4514648
Alignment:
Q  93 aaactcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactct 192  Q
    ||||||||| |||||||  |  |||||||||||||| || ||||||||||||||||| ||||| | |||||||||||||||||| |||||||||||||||    
T  4514848 aaactcagacgacaaaaccactgagccaccaatgacaagatcaggcctaatgatccataaaaaggttttcttgctattggccaaaccccaagcaaactct 4514749  T
Q  193 aacagttgatctggagtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatct 292  Q
    |||| ||  || |||| |||||  |||||||| |||||| || || |||||||||||  | | ||| || |||||||||||||||||||| || ||||||    
T  4514748 aacaatttctccggagacataatcgtgatgctaccaaaa-ttaacataaacaacagatcctgattcttttgattcaagccattcaagacatttagtatct 4514650  T
Q  293 tc 294  Q
    ||    
T  4514649 tc 4514648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 93 - 294
Target Start/End: Original strand, 4617427 - 4617627
Alignment:
Q  93 aaactcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactct 192  Q
    |||||||||||| ||||| |  |||||||||||||| || |||||||| |||||||||||||||| |||||||| ||||||||| ||||||||||| ||     
T  4617427 aaactcagatgagaaaatcactgagccaccaatgacaagatcaggccttatgatccacaaaaatgatttcttgcaattggccaaaccccaagcaaattcc 4617526  T
Q  193 aacagttgatctggagtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatct 292  Q
    |  | ||| || || ||||||||||| |||||||| ||| ||||| |||||||| ||  | || ||||||||||||||||| ||||||||||  ||||||    
T  4617527 agtaattgctcgggtgtcataactgtaatgctgccgaaa-ttcacataaacaactgatcccggctccttggattcaagccaatcaagacactctgtatct 4617625  T
Q  293 tc 294  Q
    ||    
T  4617626 tc 4617627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 115 - 291
Target Start/End: Original strand, 4506284 - 4506459
Alignment:
Q  115 gagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaacagttgatctggagtcataa 214  Q
    ||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| | ||  || |||| |||||    
T  4506284 gagccaccaattacaagatcaggcctaatgatccacaaaaagggtttcttgctattggccaaaccccaagcaaactctaaaaatttctccggagacataa 4506383  T
Q  215 ctgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatc 291  Q
     ||||||||| |||||| ||||| |||||||||||  | ||||| || ||||| |||||||| ||||| || |||||    
T  4506384 ttgtgatgcttccaaaa-ttcacataaacaacagaagccggttcttttgattccagccattcgagacatttagtatc 4506459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 115 - 294
Target Start/End: Original strand, 4574735 - 4574913
Alignment:
Q  115 gagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaacagttgatctggagtcataa 214  Q
    |||||||||||||| || ||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||  || |  ||| ||| |||||    
T  4574735 gagccaccaatgacaagatcaggcctaatgatccacaaaaagggttttttgctgttggccaaaccccaagcaaactctacgagcttctctcgagacataa 4574834  T
Q  215 ctgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttc 294  Q
    | |||||||||||||||||| || |||||||||||    ||||| || ||||||| |||||||||||| || ||||||||    
T  4574835 cagtgatgctgccaaaattt-acataaacaacagatcttggttcttttgattcaatccattcaagacatttagtatcttc 4574913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 97 - 294
Target Start/End: Complemental strand, 4266889 - 4266693
Alignment:
Q  97 tcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaaca 196  Q
    ||||||||||||| ||  ||||| |||||||| || ||||||||||| ||||||||||| || |||||||| |||||||| ||||||||||||||||| |    
T  4266889 tcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctgttggccaaaccccaagcaaactctaaga 4266790  T
Q  197 gttgatctggagtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttc 294  Q
    | |  ||| | | ||||||||||||||| ||||||||| || |||||||||||    ||||| || ||||||||||| |||||||| || ||||||||    
T  4266789 gcttctctcgtgacataactgtgatgctaccaaaattt-acataaacaacagatcttggttcttttgattcaagccactcaagacatttagtatcttc 4266693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 93 - 294
Target Start/End: Original strand, 4592636 - 4592836
Alignment:
Q  93 aaactcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactct 192  Q
    |||||| |||||||||| ||  | |||||||||||| || ||||||||||||||||||||||| ||||| |||| ||||||||| |||||||||||||||    
T  4592636 aaactccgatgacaaaacaattgtgccaccaatgacaagatcaggcctaatgatccacaaaaaaggtttattgcaattggccaaaccccaagcaaactct 4592735  T
Q  193 aacagttgatctggagtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatct 292  Q
    |||| ||  |||  | |||||||||| | |||||| ||| ||||| |||||||| ||  | | |||||| ||||||||||||| ||||||||  ||||||    
T  4592736 aacattttctcttcattcataactgtaaggctgccgaaa-ttcacataaacaacggaacccgattccttcgattcaagccatttaagacactcagtatct 4592834  T
Q  293 tc 294  Q
    ||    
T  4592835 tc 4592836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 115 - 294
Target Start/End: Original strand, 4481120 - 4481298
Alignment:
Q  115 gagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaacagttgatctggagtcataa 214  Q
    |||||||||||||| || | || |||||| |||||||||||   ||| ||||||||||| || ||||||||||||||||| ||||  ||| ||| |||||    
T  4481120 gagccaccaatgacaagattagacctaataatccacaaaaagttttttttgctattggcaaaaccccaagcaaactctaagagtttctcttgagacataa 4481219  T
Q  215 ctgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttc 294  Q
     ||||||||||||||||||| || |||||||||||  | ||||| || |||||||||||||||||||| || ||||||||    
T  4481220 ttgtgatgctgccaaaattt-acataaacaacagatcctggttcttttgattcaagccattcaagacatttagtatcttc 4481298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 297 - 368
Target Start/End: Complemental strand, 4255458 - 4255387
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctttttat 368  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4255458 ttgctagtttgaataatagattgatatggccttgaactggatatggaatcaacacagcatgtggcattttat 4255387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 100 - 282
Target Start/End: Original strand, 4458006 - 4458188
Alignment:
Q  100 gatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggttt-cttgctattggccaatccccaagcaaactctaacagt 198  Q
    |||||||||| ||  |||||||||||||| || ||||||||| | ||||||||||| ||||| |||||| ||||||||  |||||||||| ||||| ||     
T  4458006 gatgacaaaacaaccgagccaccaatgacaagatcaggcctagttatccacaaaaaaggttttcttgctgttggccaaaacccaagcaaattctaagagc 4458105  T
Q  199 tgatctggagtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagaca 282  Q
    |  ||| ||| ||||||||||||||| ||||||||| || |||| ||||||||  ||||| || ||||||||||| ||||||||    
T  4458106 ttctcttgagacataactgtgatgcttccaaaattt-acataaataacagactttggttcttttgattcaagccactcaagaca 4458188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 299 - 368
Target Start/End: Complemental strand, 4258811 - 4258742
Alignment:
Q  299 gctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctttttat 368  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4258811 gctagtttgaacaatggattgatatggccttgagctggatatggaatcaacacagcatgtggctttttat 4258742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 368
Target Start/End: Original strand, 4623798 - 4623869
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctttttat 368  Q
    ||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  4623798 ttgctagtttgaacaatggattgatatgaccttgaactggatatgcaatcaacacagcatgtggctttttat 4623869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 4254995 - 4254934
Alignment:
Q  378 gcttgcaccatcggatcagaaattgattggttgttgcgctactgccttgctctccctttgct 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4254995 gcttgcaccatcggatcagaaattgattggttgttgcgctactgccttgctctccccttgct 4254934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 297 - 370
Target Start/End: Original strand, 4558616 - 4558689
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctttttatca 370  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  4558616 ttgctagtttcaacaatggattgatatggccttgaactggatatggaattaacacagcatgtggttttttatca 4558689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 4568461 - 4568580
Alignment:
Q  93 aaactcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactct 192  Q
    |||||| |||||||||||||  |||||||||||||| || | ||||||||||||||||||||| ||||||||||| ||||| || || ||||  ||||||    
T  4568461 aaactcggatgacaaaataactgagccaccaatgacaagctaaggcctaatgatccacaaaaaaggtttcttgctgttggcaaaacctcaagagaactct 4568560  T
Q  193 aacagttgatctggagtcataac 215  Q
    |||   || ||||||||||||||    
T  4568561 aac---tgctctggagtcataac 4568580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 360
Target Start/End: Complemental strand, 4612355 - 4612292
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtgg 360  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  4612355 ttgctagtttgattaatggattgatatggccttgaactggatatggaattaacactgcatgtgg 4612292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 360
Target Start/End: Original strand, 4618792 - 4618855
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtgg 360  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  4618792 ttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtgg 4618855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 360
Target Start/End: Original strand, 4507404 - 4507465
Alignment:
Q  299 gctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtgg 360  Q
    ||||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||    
T  4507404 gctagtttgaacaatggattgatatggccttgagttggatatggaatcaacacagcatgtgg 4507465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 370
Target Start/End: Original strand, 4572457 - 4572530
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctttttatca 370  Q
    |||||||||  || |||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||    
T  4572457 ttgctagttgcaacaatggattgatatggccttgaactggatatgggattaacacagcatgtggttttttatca 4572530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 371
Target Start/End: Original strand, 4581505 - 4581579
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctttttatcag 371  Q
    |||||||| | | ||||||| ||||||| ||||||| |||||||||||||||||| |||||||||||||||||||    
T  4581505 ttgctagtgttattaatggagtgatatgtccttgaagtggatatggaatcaacactgcatgtggctttttatcag 4581579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 4627641 - 4627707
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctt 363  Q
    |||||||| | || |||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  4627641 ttgctagtatcaacaatggattgatatggccttgaagtggaaatggaatcaacacagcatgtggctt 4627707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 4603601 - 4603662
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgt 358  Q
    |||||||||| || | |||||||||||||||||||| |||||||||||||||||||||||||    
T  4603601 ttgctagtttcaacattggattgatatggccttgaagtggatatggaatcaacacagcatgt 4603662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 297 - 364
Target Start/End: Original strand, 4471405 - 4471472
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggcttt 364  Q
    |||||||||| || |||| |||||||||||||||| ||||| |||||||||| |||||||||||||||    
T  4471405 ttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatgtggcttt 4471472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 4513600 - 4513553
Alignment:
Q  313 tggattgatatggccttgaactggatatggaatcaacacagcatgtgg 360  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  4513600 tggattgatatggccttgaagtggatatggaatcaacacagcatgtgg 4513553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 4265691 - 4265627
Alignment:
Q  300 ctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggcttt 364  Q
    |||| ||||| |||| ||||||||||||||||| ||||  |||||||||||||||||||||||||    
T  4265691 ctagattgaacaatgcattgatatggccttgaaatggagctggaatcaacacagcatgtggcttt 4265627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 360
Target Start/End: Original strand, 3173494 - 3173557
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtgg 360  Q
    |||||||||| || |||| |||||||||||||||||||||||||||| | ||||| ||||||||    
T  3173494 ttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtgg 3173557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 343
Target Start/End: Original strand, 4569561 - 4569607
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatgga 343  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||    
T  4569561 ttgctagtttcaataatggattgatatggccttgaagtggatatgga 4569607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 4587125 - 4587183
Alignment:
Q  299 gctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatg 357  Q
    |||||||| || ||||||||||||||||||||||||||| |||| || |||||||||||    
T  4587125 gctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatg 4587183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 366
Target Start/End: Original strand, 4575946 - 4576015
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggcttttt 366  Q
    |||||| ||| || |||| |||||||||||||||||||||| ||||| | ||||| ||||||||||||||    
T  4575946 ttgctattttcaacaatgcattgatatggccttgaactggaaatggagttaacactgcatgtggcttttt 4576015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 4462701 - 4462765
Alignment:
Q  300 ctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggcttt 364  Q
    ||||||| || |||| |||||||||||||||   |||| ||||||||||||||||||||||||||    
T  4462701 ctagtttcaacaatgcattgatatggccttgggatggacatggaatcaacacagcatgtggcttt 4462765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 360
Target Start/End: Original strand, 4565520 - 4565583
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtgg 360  Q
    |||| |||||||| |||||||| ||||| ||||||| ||||  |||||||||||||||||||||    
T  4565520 ttgcaagtttgaacaatggatttatatgtccttgaaatggagctggaatcaacacagcatgtgg 4565583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 360
Target Start/End: Original strand, 4594501 - 4594564
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtgg 360  Q
    |||| |||||||| |||||||| ||||| ||||||| ||||  |||||||||||||||||||||    
T  4594501 ttgcaagtttgaacaatggatttatatgtccttgaagtggagctggaatcaacacagcatgtgg 4594564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 4497879 - 4497813
Alignment:
Q  300 ctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggcttttt 366  Q
    ||||||| || ||||||||||||||||||| || |||| ||||| | ||||| ||||||||||||||    
T  4497879 ctagtttcaacaatggattgatatggccttaaattggaaatggagttaacactgcatgtggcttttt 4497813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 363
Target Start/End: Original strand, 4517831 - 4517897
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctt 363  Q
    |||||||||| || || ||||||||||||||||||| |||||||||| | | ||| |||||||||||    
T  4517831 ttgctagttttaacaacggattgatatggccttgaagtggatatggagttatcactgcatgtggctt 4517897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 4470122 - 4470171
Alignment:
Q  20 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacacca 69  Q
    ||||||||||| | ||||| ||||||||||||||||||||| ||||||||    
T  4470122 aagaatccaccgattgaagggtggttcagtacttgctcttgaggacacca 4470171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 364
Target Start/End: Complemental strand, 4488831 - 4488767
Alignment:
Q  300 ctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggcttt 364  Q
    ||||||| || |||| |||||||||||||||||||||| ||||  | ||||| ||||||||||||    
T  4488831 ctagtttcaacaatgcattgatatggccttgaactggaaatggtgttaacactgcatgtggcttt 4488767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 4622461 - 4622529
Alignment:
Q  20 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacaccaacccgcgattggtcctcta 88  Q
    ||||||||||||| || || |||||| ||||||| |||||| ||||||||||| |||||| | ||||||    
T  4622461 aagaatccaccaattgcagggtggttaagtacttcctcttgtggacaccaacctgcgattaggcctcta 4622529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 4299634 - 4299587
Alignment:
Q  20 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacac 67  Q
    ||||||||||||| ||||| ||||||||||||||| ||||| ||||||    
T  4299634 aagaatccaccaattgaagggtggttcagtacttgttcttgtggacac 4299587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 4482370 - 4482425
Alignment:
Q  311 aatggattgatatggccttgaactggatatggaatcaacacagcatgtggcttttt 366  Q
    |||| |||||||||||||||| ||||| ||||| ||||||| |||||||| |||||    
T  4482370 aatgcattgatatggccttgagctggaaatggagtcaacactgcatgtggtttttt 4482425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 4592550 - 4592609
Alignment:
Q  20 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacaccaacccgcgatt 79  Q
    ||||||||||||| ||||| |||||| | |||||||||||| |||||||| | |||||||    
T  4592550 aagaatccaccaattgaagggtggtttaatacttgctcttgaggacaccagctcgcgatt 4592609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 4560825 - 4560895
Alignment:
Q  20 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacaccaacccgcgattggtcctctatc 90  Q
    ||||||||||| ||||| | |||||||| ||||| |||||| ||||||||||  || ||| ||||||||||    
T  4560825 aagaatccaccgactgatgggtggttcaatactttctcttgtggacaccaacttgctattagtcctctatc 4560895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 4574627 - 4574697
Alignment:
Q  20 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacaccaacccgcgattggtcctctatc 90  Q
    ||||||||||| ||||||  |||||||| ||||| |||||| ||||||||||  || ||| ||||||||||    
T  4574627 aagaatccaccgactgaaaggtggttcaatactttctcttgtggacaccaacttgctattagtcctctatc 4574697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 4613531 - 4613461
Alignment:
Q  20 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacaccaacccgcgattggtcctctatc 90  Q
    |||||||| |||| ||||| |||||| | |||||||||||| |||||||| | ||||||| | ||||||||    
T  4613531 aagaatccgccaattgaagggtggtttaatacttgctcttgaggacaccagctcgcgattaggcctctatc 4613461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 4568375 - 4568424
Alignment:
Q  20 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacacca 69  Q
    |||||||  |||||||||| ||||||||  ||||||||||||||||||||    
T  4568375 aagaatcgtccaactgaagggtggttcaacacttgctcttgcggacacca 4568424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 378 - 429
Target Start/End: Complemental strand, 4258326 - 4258274
Alignment:
Q  378 gcttgcaccatcgga-tcagaaattgattggttgttgcgctactgccttgctc 429  Q
    ||||||||||| ||| |||||  ||||||||||||||||||||||| ||||||    
T  4258326 gcttgcaccattggaatcagaccttgattggttgttgcgctactgctttgctc 4258274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #65
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 4493415 - 4493459
Alignment:
Q  316 attgatatggccttgaactggatatggaatcaacacagcatgtgg 360  Q
    ||||||||| |||||| ||||| ||||||||||||| ||||||||    
T  4493415 attgatatgaccttgagctggaaatggaatcaacactgcatgtgg 4493459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 4e-73; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 3086739 - 3087025
Alignment:
Q  20 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacaccaacccgcgattggtcctctatccgaaa-------------ctcagatgaca 106  Q
    ||||||||||||| ||||| ||| |||| ||||||||||||||||||||| |  |||||| | |||||||| ||||             |||||||||||    
T  3086739 aagaatccaccaattgaagggtgattcaatacttgctcttgcggacaccagcttgcgattagacctctatctgaaatttctttctcaaactcagatgaca 3086838  T
Q  107 aaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaacagttgatctgg 206  Q
     |||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| |    
T  3086839 taataaaggagccgccaatgacaagatcaggcctaatgatccacaaaaatggtttcttgctattggccaaaccccaagcaaactctaatagttgctcttg 3086938  T
Q  207 agtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttc 294  Q
    |||||||||||| ||||||||||||  |||| ||||||||||||||| || |||| ||||||||||||||||||||||||||||||||    
T  3086939 agtcataactgtaatgctgccaaaa-ctcacataaacaacagactcaagtccctttgattcaagccattcaagacacttggtatcttc 3087025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 297 - 370
Target Start/End: Original strand, 3088236 - 3088309
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctttttatca 370  Q
    |||||||||| || |||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  3088236 ttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatgtggctttttatca 3088309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 136; Significance: 9e-71; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 4499 - 4213
Alignment:
Q  20 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacaccaacccgcgattggtcctctatccgaaa-------------ctcagatgaca 106  Q
    ||||||||||||| ||||| ||||||||||||||||||||| |||||||| | ||| ||| | |||||||| ||||             |||||||||||    
T  4499 aagaatccaccaattgaagggtggttcagtacttgctcttgtggacaccagctcgcaattaggcctctatctgaaatttcattctcaaactcagatgaca 4400  T
Q  107 aaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaacagttgatctgg 206  Q
    ||||||| ||||| |||||||| |||||||||||||||||||||||||| | |||||| | ||||| |||  ||||||||||||||||||||||||||||    
T  4399 aaataaacgagccgccaatgacaaggtcaggcctaatgatccacaaaaaggatttcttacaattggtcaaaacccaagcaaactctaacagttgatctgg 4300  T
Q  207 agtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttc 294  Q
    |||||||||||| ||||| |||||| ||||| |||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||    
T  4299 agtcataactgtaatgcttccaaaa-ttcacataaacaaccgactcaggttccttggatgcaagccactcaagacacttggtatcttc 4213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 3532 - 3246
Alignment:
Q  20 aagaatccaccaactgaagagtggttcagtacttgctcttgcggacaccaacccgcgattggtcctctatccgaaa-------ctca------gatgaca 106  Q
    ||||||||||||| ||||| |||| |||||||||||||||| |||||||| |  | |||| | |||||||| ||||       ||||      |||||||    
T  3532 aagaatccaccaattgaagggtggatcagtacttgctcttgtggacaccagcttgtgattaggcctctatctgaaatttcattctcaaattctgatgaca 3433  T
Q  107 aaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaacagttgatctgg 206  Q
    ||||||| ||||| |||||||| || ||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| ||||||||||||| |||    
T  3432 aaataaacgagccgccaatgacaagatcaggcctaatgatccacaaaaacggtttcttgctatcggccaaaccccaagcaaattctaacagttgatttgg 3333  T
Q  207 agtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttc 294  Q
    |||||||||||| |||||||| ||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3332 agtcataactgtaatgctgccgaaa-ttcacataaacaacagactcaggttccttggattcgagccattcaagacacttggtatcttc 3246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 360
Target Start/End: Complemental strand, 2088 - 2025
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtgg 360  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  2088 ttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtgg 2025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 93 - 294
Target Start/End: Original strand, 1674631 - 1674831
Alignment:
Q  93 aaactcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactct 192  Q
    |||||||||||||||||  |  |||||||||||||| || ||||||||| ||||||||||||| |||||||||| || |||||| ||||||||||||||     
T  1674631 aaactcagatgacaaaaccactgagccaccaatgacaagatcaggcctagtgatccacaaaaaaggtttcttgcaatcggccaaaccccaagcaaactcc 1674730  T
Q  193 aacagttgatctggagtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatct 292  Q
    || ||||||||||||||||||||  | ||||| || ||| ||||| |||||||| ||  | ||||| |||||||||||||||||||||||||  ||||||    
T  1674731 aatagttgatctggagtcataacaataatgctaccgaaa-ttcacataaacaaccgatcccggttcgttggattcaagccattcaagacactcagtatct 1674829  T
Q  293 tc 294  Q
    ||    
T  1674830 tc 1674831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 93 - 293
Target Start/End: Complemental strand, 16685994 - 16685795
Alignment:
Q  93 aaactcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactct 192  Q
    |||||||||||||||||  | ||| || | |||||| || |||| ||||||||||||   |||  ||| ||||||||||| ||| |||||||||||||||    
T  16685994 aaactcagatgacaaaaccacggaaccgcaaatgacaagatcagacctaatgatccattgaaaatgttgcttgctattggtcaaaccccaagcaaactct 16685895  T
Q  193 aacagttgatctggagtcataactgtgatgctgccaaaatttcacgtaaacaacag-actcaggttccttggattcaagccattcaagacacttggtatc 291  Q
    || ||||  |||| |||||||||||| ||||| |||||| ||||| |||||||| | |||| |||||||||||||||||||| |||||||||||||||||    
T  16685894 aatagtttttctgcagtcataactgtcatgctcccaaaa-ttcacataaacaacggaactc-ggttccttggattcaagccaatcaagacacttggtatc 16685797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 93 - 282
Target Start/End: Complemental strand, 20863570 - 20863382
Alignment:
Q  93 aaactcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactct 192  Q
    |||| ||||||| ||||| |  |||||||||||||| || ||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||    
T  20863570 aaacgcagatgaaaaaatcaccgagccaccaatgacaagatcaggcctaatgatccacaaaaagggtttcttgctgttggccaaaccccatgcaaactct 20863471  T
Q  193 aacagttgatctggagtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagaca 282  Q
    |||| ||  |||  || ||| |||||| | |||||||||||| || || |||| |||  | ||||| || |||||||||||| |||||||    
T  20863470 aacaatttttctacagacatgactgtggtactgccaaaattt-acatatacaatagatcccggttctttcgattcaagccatgcaagaca 20863382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 1676012 - 1676074
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtg 359  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  1676012 ttgctagtttgaacaatggattgatatggccttgagctggatatggaatgaacacagcatgtg 1676074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 373
Target Start/End: Complemental strand, 20862447 - 20862371
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggctttttatcagca 373  Q
    |||||||||| || | |||||||||||| ||||||| |||||||||| | ||||| |||||||| ||||| ||||||    
T  20862447 ttgctagttttaacattggattgatatgaccttgaagtggatatggagttaacactgcatgtggttttttctcagca 20862371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 97 - 294
Target Start/End: Original strand, 1281523 - 1281719
Alignment:
Q  97 tcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaaca 196  Q
    |||||||||||||| |  ||||| |||||||| || ||||||||| |||||||||||||||||||||||||||| ||||  ||||||||||| ||    |    
T  1281523 tcagatgacaaaatcactgagccgccaatgacaagatcaggcctagtgatccacaaaaatggtttcttgctattagccagaccccaagcaaattcctgaa 1281622  T
Q  197 gttgatctggagtcataactgtgatgctgccaaaatttcacgtaaacaacaga-ctcaggttccttggattcaagccattcaagacacttggtatcttc 294  Q
    |||| ||||||||||||||||| ||||| || ||| ||||| ||||||||||| ||| |||||||| ||||||||||||| |||||||| | |||||||    
T  1281623 gttgctctggagtcataactgtaatgcttccgaaa-ttcacataaacaacagatctc-ggttccttcgattcaagccattgaagacactcgatatcttc 1281719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 297 - 360
Target Start/End: Original strand, 1282924 - 1282987
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtgg 360  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1282924 ttgctagtttgaacaatggattgatatggccttgagctggatatggaatcaacacagcatgtgg 1282987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 97 - 294
Target Start/End: Original strand, 24103408 - 24103604
Alignment:
Q  97 tcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggccaatccccaagcaaactctaaca 196  Q
    ||||||||||||| ||  ||||| |||||||| || ||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||| |    
T  24103408 tcagatgacaaaacaactgagcccccaatgacaagatcaggcctaattatccacaaaaaagggttcttgctattggccaaaccccaagcaaactctaaga 24103507  T
Q  197 gttgatctggagtcataactgtgatgctgccaaaatttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttc 294  Q
    | |  ||| | | ||||||||||||||| ||||||||| || |||||||| ||    ||||| || ||||||||||| |||||||| || ||||||||    
T  24103508 gcttctctcgtgacataactgtgatgctaccaaaattt-acataaacaactgatcttggttcttttgattcaagccactcaagacatttagtatcttc 24103604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 24093152 - 24093213
Alignment:
Q  378 gcttgcaccatcggatcagaaattgattggttgttgcgctactgccttgctctccctttgct 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24093152 gcttgcaccatcggatcagaaattgattggttgttgcgctactgccttgctctccccttgct 24093213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 174
Target Start/End: Complemental strand, 27999826 - 27999745
Alignment:
Q  93 aaactcagatgacaaaataaaggagccaccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgctattggcc 174  Q
    |||||||||||||||||  |  |||||||||||||| || | ||||||| ||||||||||||| |||||||||| |||||||    
T  27999826 aaactcagatgacaaaaccactgagccaccaatgacaagattaggcctagtgatccacaaaaaaggtttcttgcaattggcc 27999745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 24104589 - 24104653
Alignment:
Q  300 ctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggcttt 364  Q
    |||||||||| |||| ||||||||| ||||||| ||||  |||||||||||||||||| ||||||    
T  24104589 ctagtttgaacaatgcattgatatgaccttgaaatggagctggaatcaacacagcatgcggcttt 24104653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Original strand, 24106974 - 24107011
Alignment:
Q  233 ttcacgtaaacaacagactcaggttccttggattcaag 270  Q
    ||||| ||||||||| ||||||||||||||||||||||    
T  24106974 ttcacataaacaacaaactcaggttccttggattcaag 24107011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 297 - 366
Target Start/End: Original strand, 2315 - 2384
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggcttttt 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2315 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggtttttt 2384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 3208 - 3162
Alignment:
Q  121 ccaatgacgaggtcaggcctaatgatccacaaaaatggtttcttgct 167  Q
    |||||||| ||||||| |||||||||||||| ||| |||||||||||    
T  3208 ccaatgacaaggtcagacctaatgatccacacaaagggtttcttgct 3162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 1249 - 1311
Alignment:
Q  297 ttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtg 359  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  1249 ttgctagtttgaacaatggattgatatggccttgagctggatatggaatgaacacagcatgtg 1311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 7 - 68
Alignment:
Q  233 ttcacgtaaacaacagactcaggttccttggattcaagccattcaagacacttggtatcttc 294  Q
    ||||| |||||||| ||  | ||||| |||||||||||||||||||||||||  ||||||||    
T  7 ttcacataaacaaccgatcccggttcgttggattcaagccattcaagacactcagtatcttc 68  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University