View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3767_low_6 (Length: 442)
Name: NF3767_low_6
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 432
Target Start/End: Complemental strand, 47495078 - 47494660
Alignment:
| Q |
13 |
aataaggaggaatatatggttaattattgatgacatatagtgtgacaaaataaaatgatacaaaggaagtgaaggt---tagaagaagatgtgattgagg |
109 |
Q |
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| T |
47495078 |
aataaggaggaatatatggttaattattgatgacatatagtgtgacaaaataaaatgatacaaaggaagtgaaggtaattagaagaagatgtgattgagg |
47494979 |
T |
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| Q |
110 |
ataggaattgtggagaagaatagaatgcatgtatatagtagtaggttttgcctcgggatgagaattaagatgaagaaggtgtgagtggaatgatgtcaaa |
209 |
Q |
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| T |
47494978 |
ataggaattgtggagaagaatagaatgcatgtatatagtagtaggttttgcctcgggatgagaattaagatgaagaaggtgtgagtggaatgatgtcaaa |
47494879 |
T |
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| Q |
210 |
ggggagcaaacacttactttagggtttgtcatgcttaatttgtactcaataaaaatcaaccccttgtgtctttgcgcatgcacctgaaatattcttnnnn |
309 |
Q |
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| T |
47494878 |
ggggagcaaacacttactttagggtttgtcatgcttaatttgtactcaataaaaatcaaccccttgtgtctttgcgcatgcacctgaaatattctt---- |
47494783 |
T |
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| Q |
310 |
nnnnnnnnnnnnaatatgaaacatatcccaaacaaactcctttaattgtgtactgctaccttttctttctagctagcattaattattgtttttaactagg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47494782 |
cacacacacacaaatatgaaacatatcccaaacaaactcctttaattgtgtactgctaccttttctttctagctagcattaattattgtttttaactagg |
47494683 |
T |
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| Q |
410 |
accctttttagatcatgcctatg |
432 |
Q |
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| T |
47494682 |
accctttttagatcatgcttatg |
47494660 |
T |
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