View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3767_low_7 (Length: 416)
Name: NF3767_low_7
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_low_7 |
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| [»] scaffold0472 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 5970642 - 5971041
Alignment:
| Q |
1 |
cctcccacaaactgggcattttctgattaaacccaacatgaataatctttaatccagattttccaataatcgaagcagtctcattagtaacaccgccagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5970642 |
cctcccacaaactgggcattttctgattaaacccaacatgaataatctttaatccagattttccaataatcgaagcagtctcattagtaacaccgccagc |
5970741 |
T |
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| Q |
101 |
ttccaccacaatccaaatcagatcataaggcacaagcatcaaagaatgcatcacaccagtcaaatgcatcgcttgaaaagtcctcacataagtcggagtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5970742 |
ttccaccacaatccaaatcagatcataaggcacaagcatcaaagaatgcatcacaccagtcaaatgcatcgcttgaaaagtcctcacataagtcggagtc |
5970841 |
T |
|
| Q |
201 |
acaacaatcacttttctagggttcttcactccaaacaacaatctctgttcattttgaactctagagattattccatgcgctttcattacttccacaggat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5970842 |
acaacaatcacttttctagggttcttcactccaaacaacaatctctgttcattttgaactctagagattattccatgcgctttcattacttccacaggat |
5970941 |
T |
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| Q |
301 |
ccggatgcggccatggccgaatccggatcccgtgtcttccaaccaccactctactcgccactactgaactcccgtttgttagaacattctgttgagtttc |
400 |
Q |
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| T |
5970942 |
ccggatgcggccatggccgaatccggatcccgtgtcttccaaccaccactctactcgccactactgaactcccgtttgttagaacattctgttgagtttc |
5971041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0472 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: scaffold0472
Description:
Target: scaffold0472; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 339 - 180
Alignment:
| Q |
1 |
cctcccacaaactgggcattttctgattaaacccaacatgaataatctttaatccagattttccaataatcgaagcagtctcattagtaacaccgccagc |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| | | |||||||||||| |||||||||||||| |||| ||||||||| ||||| |
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| T |
339 |
cctcccacaaactgggcatttgaagattaaacccaacatgaataatcctaagtccagattttcctataatcgaagcagtttcatcagtaacaccaccagc |
240 |
T |
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| Q |
101 |
ttccaccacaatccaaatcagatcataaggcacaagcatcaaagaatgcatcacaccagtcaaat |
165 |
Q |
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| T |
239 |
t-----cagaatccaaatcagatcataagacacaatcatcaaagaatgcatcacactagtcaaat |
180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 72 - 239
Target Start/End: Complemental strand, 39271815 - 39271648
Alignment:
| Q |
72 |
gaagcagtctcattagtaacaccgccagcttccaccacaatccaaatcagatcataaggcacaagcatcaaagaatgcatcacaccagtcaaatgcatcg |
171 |
Q |
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|||||||||||||| || || || |||||||||||||| ||||| | ||||||||| |||||||||||||| |||||||||||||| |||| || | | |
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| T |
39271815 |
gaagcagtctcattcgtcactcctccagcttccaccacgatccacaccagatcatacggcacaagcatcaacgaatgcatcacaccgatcaagtggagct |
39271716 |
T |
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| Q |
172 |
cttgaaaagtcctcacataagtcggagtcacaacaatcacttttctagggttcttcactccaaacaac |
239 |
Q |
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|| || ||||||||||| ||||| || || |||| || | |||||||||||||||||||||||| |
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| T |
39271715 |
tctggaacgtcctcacatacgtcggcgtaactgcaataaccgtcctagggttcttcactccaaacaac |
39271648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 54866291 - 54866223
Alignment:
| Q |
107 |
cacaatccaaatcagatcataagg--cacaagcatcaaagaatgcatcacaccagtcaaatgcatcgct |
173 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||| ||||| |
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| T |
54866291 |
cacaatccaaatcagatcataaggtgcacaatcatcaaagaatgcatcacaccactcaaatgcgtcgct |
54866223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 6702531 - 6702463
Alignment:
| Q |
107 |
cacaatccaaatcagatcataaggc--acaagcatcaaagaatgcatcacaccagtcaaatgcatcgct |
173 |
Q |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
6702531 |
cacaatccaaatcagatcataaggcgcacaatcatcaaagaatgcatcacaccagtcaaatgcgtcgct |
6702463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 17339211 - 17339143
Alignment:
| Q |
107 |
cacaatccaaatcagatcataaggc--acaagcatcaaagaatgcatcacaccagtcaaatgcatcgct |
173 |
Q |
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||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||| ||||| |
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| T |
17339211 |
cacaatccaaatcagatcataaggcgcacaatcatcaaaggatgcatcacaccagtcaaatgcgtcgct |
17339143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6398088 - 6398043
Alignment:
| Q |
1 |
cctcccacaaactgggcattttctgattaaacccaacatgaataat |
46 |
Q |
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|||| ||||||||||||||||| |||||||||| ||||||||||| |
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| T |
6398088 |
cctctcacaaactgggcattttaagattaaacccgacatgaataat |
6398043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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