View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3767_low_8 (Length: 385)
Name: NF3767_low_8
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 371
Target Start/End: Complemental strand, 47378388 - 47378032
Alignment:
| Q |
18 |
atgtggcgatctttagactttcctcacaaacaatggtatcaaagttgatggttagttaagggacatgcttcttatgacaaatagtgtcaaattcttttat |
117 |
Q |
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| T |
47378388 |
atgtggcgatctttagactttcctcacaaacaatggtatcaaagttgatggttagttaagggacatgctccttatgacaaatagtgtcaaattcttttat |
47378289 |
T |
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| Q |
118 |
atggttgatttaattaattcctgaggtg--attgaacaacaataccatatcattatgtctc------actctgatacgctcttacaacttccacctcatt |
209 |
Q |
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| T |
47378288 |
atggttgatttaattaattcctgaggtgatatcgaacaacaataccatatcattatgtctcgagttttttctgatacgctcttacaacttccacctcatt |
47378189 |
T |
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| Q |
210 |
gttaaggttagttaatttccccgggagtcctagtaaagtgacgtctcaatccaagggtaagagaatagtgtgtgataatcacnnnnnnnnnnnaaggagt |
309 |
Q |
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| T |
47378188 |
gttaag----gttaatttccccgggagtcctagtaaagtgacgtctcaatccaagggtaagagaatagtgtgtgataatcac-ttatttttttaaggagt |
47378094 |
T |
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| Q |
310 |
ttgtgatatcacttgtaatgtgagtctcttgcaagtgatcacagtggtcgtaacatgatgat |
371 |
Q |
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| T |
47378093 |
gtgcgatatcacttgtaatgtgagtctcttgcaagtgatcacagtggtcgtaacatgatgat |
47378032 |
T |
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