View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3767_low_9 (Length: 376)
Name: NF3767_low_9
Description: NF3767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3767_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 3168547 - 3168180
Alignment:
| Q |
1 |
tctataacaaattatgataattaaattttatttattgaaagtattggcaaaacaaaattttatttgtctgaannnnnnnnagatgaatttttctgaattt |
100 |
Q |
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| T |
3168547 |
tctataacaaattatgataattaaattttatttattgaaagtattggcgaaacaaaattttatttgtctgaattttttttagatgaatttttctgaattt |
3168448 |
T |
|
| Q |
101 |
attaatactcatagttgtaaatattgannnnnnncacgatataatgtaaaagaatcagtattatttttataaataatgaaacaatgttttcttgcataaa |
200 |
Q |
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| T |
3168447 |
attaatactcatagttgtaaatattgatttttttcacgatataatgtaaaaaaataagtattatttttataaacaatgaaacaatgttttcttgcataaa |
3168348 |
T |
|
| Q |
201 |
tgatattttttaaaatataaaagtccaccaatgacnnnnnnncttttnnnnnnngtcaacaaatagtgttttttggtttgttaagtaatctagtggttat |
300 |
Q |
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| T |
3168347 |
tgatattttttaaaatataaaagtcaaccaatgactttttttcttttaaaaaaagtcaataaatagtgtttttttgtttgttaagtaatctagtggttat |
3168248 |
T |
|
| Q |
301 |
aaatttatcatataaaaattaataaatggggtcttcaggattggaaccctaactgtgatgatgatgtc |
368 |
Q |
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| T |
3168247 |
aaatttatcttttaaaaattaataaatggggtcttcaggattgaaaccctaaccctgacgatgatgtc |
3168180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 26358740 - 26358661
Alignment:
| Q |
143 |
aatgtaaaagaatcagtattatttttataaataatgaaacaatgttttcttgcat---aaatgatattttttaaaatata |
219 |
Q |
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| T |
26358740 |
aatgtaaaaaaattagtatgatttttataaaaaatgaaatgatgtttttttccatataaaatgatattttttaaaatata |
26358661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 47302205 - 47302277
Alignment:
| Q |
148 |
aaaagaatcagtattatttttataaataatgaaacaatgttttcttgcat-aaatgatattttttaaaatata |
219 |
Q |
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| T |
47302205 |
aaaaaaattagtatgatttttataaaaaatgaaacaatgttttttcttataaaatgatattttttaaaatata |
47302277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 27539135 - 27539214
Alignment:
| Q |
143 |
aatgtaaaagaatcagtattatttttataaataatgaaacaatgttttcttgcat---aaatgatattttttaaaatata |
219 |
Q |
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| T |
27539135 |
aatgtaaaaaaattagtatgatttttataaaaaatgaaatgatgttttttttcatataaaatgatattttctaaaatata |
27539214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 52589290 - 52589369
Alignment:
| Q |
143 |
aatgtaaaagaatcagtattatttttataaataatgaaacaatgttttcttgcat---aaatgatattttttaaaatata |
219 |
Q |
| |
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| T |
52589290 |
aatgtaaaaaaattagtatgatttttataaaaaatgaaatgatgttttttttcatataaaatgatattttctaaaatata |
52589369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 1490858 - 1490793
Alignment:
| Q |
157 |
agtattatttttataaataatgaaacaatgttttcttgcat-aaatgatattttttaaaatataaa |
221 |
Q |
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| T |
1490858 |
agtatgatttctataaataatgaaacaatgttttttcttataaaatgatagtttttaaaatataaa |
1490793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Complemental strand, 18228647 - 18228569
Alignment:
| Q |
143 |
aatgtaaaagaatcagtattatttttataaataatgaaacaatgttttcttgcat---aaatgatattttttaaaatata |
219 |
Q |
| |
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||||||||| ||| ||||||||||||||||| ||||||| ||||||| || ||| |||||||||||| ||||||||| |
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| T |
18228647 |
aatgtaaaaaaattagtattatttttataaaaaatgaaatgatgtttt-tttcatataaaatgatattttctaaaatata |
18228569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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