View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3768_high_10 (Length: 260)

Name: NF3768_high_10
Description: NF3768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3768_high_10
NF3768_high_10
[»] chr5 (16 HSPs)
chr5 (1-245)||(33331302-33331558)
chr5 (81-125)||(26190105-26190149)
chr5 (3-42)||(26093847-26093886)
chr5 (3-42)||(32841674-32841713)
chr5 (81-123)||(6157027-6157069)
chr5 (81-123)||(14112161-14112203)
chr5 (81-123)||(32841754-32841796)
chr5 (9-42)||(12847798-12847831)
chr5 (3-32)||(18515204-18515233)
chr5 (3-32)||(26190015-26190044)
chr5 (5-42)||(31221033-31221070)
chr5 (5-42)||(33488001-33488038)
chr5 (5-42)||(40619681-40619718)
chr5 (81-113)||(21070671-21070703)
chr5 (81-113)||(27158390-27158422)
chr5 (3-39)||(33901351-33901387)
[»] chr4 (23 HSPs)
chr4 (3-42)||(4936427-4936466)
chr4 (3-42)||(3702942-3702981)
chr4 (3-42)||(23524221-23524260)
chr4 (82-125)||(25491179-25491222)
chr4 (81-123)||(19835862-19835904)
chr4 (81-123)||(25752226-25752268)
chr4 (81-123)||(34973206-34973248)
chr4 (81-123)||(38536513-38536555)
chr4 (5-42)||(2505726-2505763)
chr4 (3-32)||(6228507-6228536)
chr4 (5-42)||(25538670-25538707)
chr4 (3-32)||(27632062-27632091)
chr4 (3-32)||(29515372-29515401)
chr4 (3-32)||(32442261-32442290)
chr4 (5-42)||(40704369-40704406)
chr4 (81-122)||(48318847-48318888)
chr4 (5-42)||(55052389-55052426)
chr4 (81-113)||(6228596-6228628)
chr4 (83-123)||(7931998-7932038)
chr4 (81-113)||(18050972-18051004)
chr4 (6-42)||(25752150-25752186)
chr4 (10-42)||(28560263-28560295)
chr4 (81-113)||(31582213-31582245)
[»] chr1 (22 HSPs)
chr1 (81-128)||(40650487-40650534)
chr1 (81-123)||(33611193-33611235)
chr1 (3-42)||(667100-667139)
chr1 (3-42)||(4615304-4615343)
chr1 (3-34)||(23443169-23443200)
chr1 (3-42)||(25563190-25563229)
chr1 (3-42)||(27795241-27795280)
chr1 (81-123)||(18583327-18583369)
chr1 (81-123)||(40907717-40907759)
chr1 (5-42)||(7011641-7011678)
chr1 (5-42)||(15069574-15069611)
chr1 (3-32)||(18583237-18583266)
chr1 (5-42)||(32817509-32817546)
chr1 (3-32)||(33611101-33611130)
chr1 (5-42)||(34162492-34162529)
chr1 (5-42)||(38885636-38885673)
chr1 (5-42)||(41584291-41584328)
chr1 (3-32)||(44937989-44938018)
chr1 (5-42)||(45567603-45567640)
chr1 (6-42)||(5610249-5610285)
chr1 (81-113)||(42546311-42546343)
chr1 (6-42)||(49677873-49677909)
[»] chr7 (18 HSPs)
chr7 (81-125)||(47202819-47202863)
chr7 (3-42)||(1519142-1519181)
chr7 (81-123)||(7115052-7115094)
chr7 (81-123)||(8155233-8155275)
chr7 (81-123)||(9152125-9152167)
chr7 (81-123)||(42925423-42925465)
chr7 (3-32)||(3304444-3304473)
chr7 (3-32)||(8155336-8155365)
chr7 (5-42)||(19818806-19818843)
chr7 (5-42)||(28230188-28230225)
chr7 (83-128)||(29315769-29315814)
chr7 (95-128)||(29316220-29316253)
chr7 (5-42)||(36629634-36629671)
chr7 (81-122)||(37518046-37518087)
chr7 (5-42)||(42925331-42925368)
chr7 (5-42)||(43737509-43737546)
chr7 (3-32)||(47202924-47202953)
chr7 (81-113)||(26554946-26554978)
[»] chr6 (11 HSPs)
chr6 (81-125)||(4508085-4508129)
chr6 (3-42)||(9905489-9905528)
chr6 (3-42)||(14037658-14037697)
chr6 (84-123)||(17264743-17264782)
chr6 (81-123)||(21514814-21514856)
chr6 (82-123)||(237132-237173)
chr6 (82-123)||(5699932-5699973)
chr6 (82-123)||(9905397-9905438)
chr6 (5-42)||(17264841-17264878)
chr6 (4-32)||(32044651-32044679)
chr6 (10-42)||(35191660-35191692)
[»] chr8 (19 HSPs)
chr8 (83-122)||(7981851-7981890)
chr8 (3-42)||(7981943-7981982)
chr8 (3-42)||(36980996-36981035)
chr8 (81-123)||(11698099-11698141)
chr8 (8-42)||(37344618-37344652)
chr8 (8-42)||(38004765-38004799)
chr8 (5-42)||(3095117-3095154)
chr8 (5-42)||(9073951-9073988)
chr8 (5-42)||(11698011-11698048)
chr8 (5-42)||(14163752-14163789)
chr8 (3-32)||(17119571-17119600)
chr8 (3-32)||(31519587-31519616)
chr8 (5-42)||(34853745-34853782)
chr8 (5-42)||(34854129-34854166)
chr8 (81-122)||(42280674-42280715)
chr8 (5-42)||(44106645-44106682)
chr8 (83-123)||(28917109-28917149)
chr8 (81-113)||(31234604-31234636)
chr8 (81-113)||(31519677-31519709)
[»] chr3 (13 HSPs)
chr3 (3-42)||(500878-500917)
chr3 (3-42)||(35345602-35345641)
chr3 (3-42)||(46625157-46625196)
chr3 (81-124)||(49096000-49096043)
chr3 (81-123)||(29048664-29048706)
chr3 (5-42)||(3902511-3902548)
chr3 (5-42)||(28873434-28873471)
chr3 (5-42)||(47739639-47739676)
chr3 (3-32)||(52777666-52777695)
chr3 (81-113)||(4394323-4394355)
chr3 (81-113)||(34821126-34821158)
chr3 (81-113)||(39150146-39150178)
chr3 (81-113)||(47302363-47302395)
[»] chr2 (13 HSPs)
chr2 (3-42)||(27670924-27670963)
chr2 (81-123)||(17474576-17474618)
chr2 (81-123)||(33452220-33452262)
chr2 (81-123)||(41854681-41854723)
chr2 (81-123)||(42894711-42894753)
chr2 (5-42)||(16750134-16750171)
chr2 (81-122)||(16750222-16750263)
chr2 (5-42)||(17474488-17474525)
chr2 (81-122)||(38308610-38308651)
chr2 (5-42)||(39447584-39447621)
chr2 (5-42)||(41510120-41510157)
chr2 (5-42)||(45153600-45153637)
chr2 (81-113)||(32187662-32187694)
[»] scaffold0182 (1 HSPs)
scaffold0182 (81-123)||(23307-23349)
[»] scaffold0027 (2 HSPs)
scaffold0027 (5-42)||(141687-141724)
scaffold0027 (81-113)||(141777-141809)
[»] scaffold0018 (1 HSPs)
scaffold0018 (5-42)||(174056-174093)
[»] scaffold0010 (1 HSPs)
scaffold0010 (5-42)||(140903-140940)
[»] scaffold0508 (1 HSPs)
scaffold0508 (81-113)||(3176-3208)


Alignment Details
Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 33331558 - 33331302
Alignment:
Q  1 aaaccaccaaaaaattctaaaaatcaaataaagttaatgcaannnnnnnggattttgctgagaatatatatnnnnnnnnngggtctaaaccatggaattt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||       ||||||||||||||||||| |          || ||||||| ||| |||||    
T  33331558 aaaccaccaaaaaattctaaaaatcaaataaagttaatacaatttttttggattttgctgagaatataaaaaaaaaaaaagg-tctaaacgatgaaattt 33331460  T
Q  101 tggattttgagggacgaagtc------------ccttctactgagattttttcaacaatcaattgaannnnnnnn-cttttgattatcagagcaagtttc 187  Q
    |||||||||||||||||||||            |||||||||||||||||||||||||||| ||| |         ||||||||| || |||||||||||    
T  33331459 tggattttgagggacgaagtctggtaagaagtcccttctactgagattttttcaacaatcagttggatttttttttcttttgattttcggagcaagtttc 33331360  T
Q  188 aaaataatatgagcaaatagtctgaaaactggattttcgactggaacttgatggaaac 245  Q
    |||||||||||||||||||| ||||||||||||||||||||| | ||| |||||||||    
T  33331359 aaaataatatgagcaaatagcctgaaaactggattttcgactaggactcgatggaaac 33331302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 26190105 - 26190149
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccctt 125  Q
    |||||||||| |||||||||||||||||||||| || ||||||||    
T  26190105 gggtctaaacaatggaattttggattttgaggggcggagtccctt 26190149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 26093886 - 26093847
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  26093886 accaccaaaaaattctaaaaatcaaataaaactaatgcaa 26093847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 32841674 - 32841713
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  32841674 accaccaaaaaattctaaaaatcaaataaaactaatgcaa 32841713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 6157069 - 6157027
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  6157069 gggtctaaacgatggaattttggattttgaggggcggagtccc 6157027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 14112203 - 14112161
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  14112203 gggtctaaacgatggaattttggattttgaggggcggagtccc 14112161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 32841754 - 32841796
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  32841754 gggtctaaacgatggaattttggattttgaggggcggagtccc 32841796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 12847831 - 12847798
Alignment:
Q  9 aaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    |||||||||||||||||||||||| |||||||||    
T  12847831 aaaaaattctaaaaatcaaataaaattaatgcaa 12847798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 18515233 - 18515204
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaa 32  Q
    ||||||||||||||||||||||||||||||    
T  18515233 accaccaaaaaattctaaaaatcaaataaa 18515204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 26190015 - 26190044
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaa 32  Q
    ||||||||||||||||||||||||||||||    
T  26190015 accaccaaaaaattctaaaaatcaaataaa 26190044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 31221033 - 31221070
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  31221033 caccaaaaaattctaaaaatcaaataaaactaatgcaa 31221070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 33488038 - 33488001
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  33488038 caccaaaaaattctaaaaatcaaataaaactaatgcaa 33488001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 40619681 - 40619718
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  40619681 caccaaaaaattctaaaaatcaaataaaactaatgcaa 40619718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 21070703 - 21070671
Alignment:
Q  81 gggtctaaaccatggaattttggattttgaggg 113  Q
    |||||||||| ||||||||||||||||||||||    
T  21070703 gggtctaaacaatggaattttggattttgaggg 21070671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 27158422 - 27158390
Alignment:
Q  81 gggtctaaaccatggaattttggattttgaggg 113  Q
    |||||||||| ||||||||||||||||||||||    
T  27158422 gggtctaaacgatggaattttggattttgaggg 27158390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 33901387 - 33901351
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagttaatg 39  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  33901387 accatcaaaaaattctaaaaatcaaataaaattaatg 33901351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 4936427 - 4936466
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  4936427 accaccaaaaaattctaaaaatcaaataaaattaatgcaa 4936466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 3702942 - 3702981
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  3702942 accaccaaaaaattctaaaaatcaaataaaactaatgcaa 3702981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 23524260 - 23524221
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  23524260 accaccaaaaaattctaaaaatcaaataaaattagtgcaa 23524221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 25491179 - 25491222
Alignment:
Q  82 ggtctaaaccatggaattttggattttgagggacgaagtccctt 125  Q
    ||||||||| ||||||||||||||||||||||||| | ||||||    
T  25491179 ggtctaaacgatggaattttggattttgagggacggaatccctt 25491222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 19835904 - 19835862
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  19835904 gggtctaaacaatggaattttggattttgaggggcggagtccc 19835862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 25752226 - 25752268
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  25752226 gggtctaaacgatggaattttggattttgaggggcggagtccc 25752268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 34973248 - 34973206
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  34973248 gggtctaaacaatggaattttggattttgaggggcggagtccc 34973206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 38536555 - 38536513
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  38536555 gggtctaaacgatggaattttggattttgaggggcggagtccc 38536513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 2505726 - 2505763
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  2505726 caccaaaaaattctaaaaatcaaataaaactaatgcaa 2505763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 6228507 - 6228536
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaa 32  Q
    ||||||||||||||||||||||||||||||    
T  6228507 accaccaaaaaattctaaaaatcaaataaa 6228536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 25538670 - 25538707
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  25538670 caccaaaaaattctaaaaatcaaataaaactaatgcaa 25538707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 27632062 - 27632091
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaa 32  Q
    ||||||||||||||||||||||||||||||    
T  27632062 accaccaaaaaattctaaaaatcaaataaa 27632091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 29515372 - 29515401
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaa 32  Q
    ||||||||||||||||||||||||||||||    
T  29515372 accaccaaaaaattctaaaaatcaaataaa 29515401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 32442290 - 32442261
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaa 32  Q
    ||||||||||||||||||||||||||||||    
T  32442290 accaccaaaaaattctaaaaatcaaataaa 32442261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 40704406 - 40704369
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  40704406 caccaaaaaattctaaaaatcaaataaaactaatgcaa 40704369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 48318847 - 48318888
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtcc 122  Q
    |||||||||| |||||||||||||||||||||| || |||||    
T  48318847 gggtctaaacgatggaattttggattttgaggggcggagtcc 48318888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 55052389 - 55052426
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  55052389 caccaaaaaattctaaaaatcaaataaaactaatgcaa 55052426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 6228596 - 6228628
Alignment:
Q  81 gggtctaaaccatggaattttggattttgaggg 113  Q
    |||||||||| ||||||||||||||||||||||    
T  6228596 gggtctaaacaatggaattttggattttgaggg 6228628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 7932038 - 7931998
Alignment:
Q  83 gtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||| |||||||||||||||||||||| || ||||||    
T  7932038 gtctaaacgatggaattttggattttgaggggcggagtccc 7931998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 18050972 - 18051004
Alignment:
Q  81 gggtctaaaccatggaattttggattttgaggg 113  Q
    |||||||||| ||||||||||||||||||||||    
T  18050972 gggtctaaacgatggaattttggattttgaggg 18051004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 25752150 - 25752186
Alignment:
Q  6 accaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    |||||||||||||||||||||||||||  ||||||||    
T  25752150 accaaaaaattctaaaaatcaaataaaactaatgcaa 25752186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 28560263 - 28560295
Alignment:
Q  10 aaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    |||||| ||||||||||||||||||||||||||    
T  28560263 aaaaatgctaaaaatcaaataaagttaatgcaa 28560295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 31582213 - 31582245
Alignment:
Q  81 gggtctaaaccatggaattttggattttgaggg 113  Q
    |||||||||| ||||||||||||||||||||||    
T  31582213 gggtctaaacgatggaattttggattttgaggg 31582245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 40650487 - 40650534
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtcccttcta 128  Q
    |||||||||| |||||||||||||||||||||| || |||||||||||    
T  40650487 gggtctaaacgatggaattttggattttgaggggcggagtcccttcta 40650534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 33611193 - 33611235
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| ||||||||||||||||||||||||| ||||||    
T  33611193 gggtctaaacaatggaattttggattttgagggacgtagtccc 33611235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 667139 - 667100
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  667139 accaccaaaaaattctaaaaatcaaataaaactaatgcaa 667100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 4615343 - 4615304
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  4615343 accaccaaaaaattctaaaaatcaaataaaactaatgcaa 4615304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 34
Target Start/End: Complemental strand, 23443200 - 23443169
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagt 34  Q
    ||||||||||||||||||||||||||||||||    
T  23443200 accaccaaaaaattctaaaaatcaaataaagt 23443169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 25563190 - 25563229
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  25563190 accaccaaaaaattctaaaaatcaaataaaactaatgcaa 25563229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 27795280 - 27795241
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  27795280 accaccaaaaaattctaaaaatcaaataaaactaatgcaa 27795241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 18583327 - 18583369
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  18583327 gggtctaaacaatggaattttggattttgaggggcggagtccc 18583369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 40907717 - 40907759
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  40907717 gggtctaaacgatggaattttggattttgaggggcggagtccc 40907759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 7011678 - 7011641
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  7011678 caccaaaaaattctaaaaatcaaataaaactaatgcaa 7011641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 15069574 - 15069611
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  15069574 caccaaaaaattctaaaaatcaaataaaactaatgcaa 15069611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 18583237 - 18583266
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaa 32  Q
    ||||||||||||||||||||||||||||||    
T  18583237 accaccaaaaaattctaaaaatcaaataaa 18583266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 32817509 - 32817546
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  32817509 caccaaaaaattctaaaaatcaaataaaactaatgcaa 32817546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 33611101 - 33611130
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaa 32  Q
    ||||||||||||||||||||||||||||||    
T  33611101 accaccaaaaaattctaaaaatcaaataaa 33611130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 34162492 - 34162529
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  34162492 caccaaaaaattctaaaaatcaaataaaactaatgcaa 34162529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 38885673 - 38885636
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  38885673 caccaaaaaattctaaaaatcaaataaaactaatgcaa 38885636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 41584291 - 41584328
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  41584291 caccaaaaaattctaaaaatcaaataaaactaatgcaa 41584328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 44937989 - 44938018
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaa 32  Q
    ||||||||||||||||||||||||||||||    
T  44937989 accaccaaaaaattctaaaaatcaaataaa 44938018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 45567603 - 45567640
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  45567603 caccaaaaaattctaaaaatcaaataaaactaatgcaa 45567640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 5610249 - 5610285
Alignment:
Q  6 accaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  5610249 accaaaaaattctaaaaaacaaataaagctaatgcaa 5610285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 42546343 - 42546311
Alignment:
Q  81 gggtctaaaccatggaattttggattttgaggg 113  Q
    |||||||||| ||||||||||||||||||||||    
T  42546343 gggtctaaacgatggaattttggattttgaggg 42546311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 49677909 - 49677873
Alignment:
Q  6 accaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    |||||||||||||||||||||||||||  ||||||||    
T  49677909 accaaaaaattctaaaaatcaaataaaactaatgcaa 49677873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 47202863 - 47202819
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccctt 125  Q
    |||||||||| |||||||||||||||||||||| || ||||||||    
T  47202863 gggtctaaacaatggaattttggattttgaggggcggagtccctt 47202819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 1519181 - 1519142
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  1519181 accaccaaaaaattctaaaaatcaaataaaactaatgcaa 1519142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 7115052 - 7115094
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| ||||||||||||||||||||||| | ||||||    
T  7115052 gggtctaaacaatggaattttggattttgagggaaggagtccc 7115094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 8155275 - 8155233
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  8155275 gggtctaaacaatggaattttggattttgaggggcggagtccc 8155233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 9152167 - 9152125
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  9152167 gggtctaaacgatggaattttggattttgaggggcggagtccc 9152125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 42925423 - 42925465
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  42925423 gggtctaaacgatggaattttggattttgaggggcggagtccc 42925465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 3304444 - 3304473
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaa 32  Q
    ||||||||||||||||||||||||||||||    
T  3304444 accaccaaaaaattctaaaaatcaaataaa 3304473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 8155365 - 8155336
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaa 32  Q
    ||||||||||||||||||||||||||||||    
T  8155365 accaccaaaaaattctaaaaatcaaataaa 8155336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 19818843 - 19818806
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  19818843 caccaaaaaattctaaaaatcaaataaaactaatgcaa 19818806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 28230188 - 28230225
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  28230188 caccaaaaaattctaaaaatcaaataaaactaatgcaa 28230225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 29315814 - 29315769
Alignment:
Q  83 gtctaaaccatggaattttggattttgagggacgaagtcccttcta 128  Q
    |||||||| || |||||||| ||||||| |||||||||||||||||    
T  29315814 gtctaaacgatagaattttgaattttgatggacgaagtcccttcta 29315769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 29316220 - 29316253
Alignment:
Q  95 gaattttggattttgagggacgaagtcccttcta 128  Q
    |||||||||||||||| |||||||||||||||||    
T  29316220 gaattttggattttgatggacgaagtcccttcta 29316253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 36629671 - 36629634
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  36629671 caccaaaaaattctaaaaatcaaataaaactaatgcaa 36629634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 37518046 - 37518087
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtcc 122  Q
    |||||||||| |||||||||||||||||||||| || |||||    
T  37518046 gggtctaaacgatggaattttggattttgaggggcggagtcc 37518087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 42925331 - 42925368
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  42925331 caccaaaaaattctaaaaatcaaataaaactaatgcaa 42925368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 43737546 - 43737509
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  43737546 caccaaaaaattctaaaaatcaaataaaactaatgcaa 43737509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 47202953 - 47202924
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaa 32  Q
    ||||||||||||||||||||||||||||||    
T  47202953 accaccaaaaaattctaaaaatcaaataaa 47202924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 26554946 - 26554978
Alignment:
Q  81 gggtctaaaccatggaattttggattttgaggg 113  Q
    |||||||||| ||||||||||||||||||||||    
T  26554946 gggtctaaacgatggaattttggattttgaggg 26554978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 4508085 - 4508129
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccctt 125  Q
    |||||||||| |||||||||||||||||||||| || ||||||||    
T  4508085 gggtctaaacgatggaattttggattttgaggggcggagtccctt 4508129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 9905528 - 9905489
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  9905528 accaccaaaaaattctaaaaatcaaataaaactaatgcaa 9905489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 14037658 - 14037697
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  14037658 accaccaaaaaattctaaaaatcaaattaagctaatgcaa 14037697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 123
Target Start/End: Complemental strand, 17264782 - 17264743
Alignment:
Q  84 tctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  17264782 tctaaacgatgaaattttggattttgagggacgaagtccc 17264743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 21514814 - 21514856
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  21514814 gggtctaaacgatggaattttggattttgaggggcggagtccc 21514856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 237173 - 237132
Alignment:
Q  82 ggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    ||||||||| |||||||||||||||||||||| || ||||||    
T  237173 ggtctaaacgatggaattttggattttgaggggcggagtccc 237132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 5699973 - 5699932
Alignment:
Q  82 ggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    ||||||||| |||||||||||||||||||||| || ||||||    
T  5699973 ggtctaaacgatggaattttggattttgaggggcggagtccc 5699932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 9905438 - 9905397
Alignment:
Q  82 ggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    ||||||||| |||||||||||||||||||||| || ||||||    
T  9905438 ggtctaaacgatggaattttggattttgaggggcggagtccc 9905397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 17264878 - 17264841
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  17264878 caccaaaaaattctaaaaatcaaataaaactaatgcaa 17264841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 32044679 - 32044651
Alignment:
Q  4 ccaccaaaaaattctaaaaatcaaataaa 32  Q
    |||||||||||||||||||||||||||||    
T  32044679 ccaccaaaaaattctaaaaatcaaataaa 32044651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 35191692 - 35191660
Alignment:
Q  10 aaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    |||||| ||||||||||||||||||||||||||    
T  35191692 aaaaatactaaaaatcaaataaagttaatgcaa 35191660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 122
Target Start/End: Complemental strand, 7981890 - 7981851
Alignment:
Q  83 gtctaaaccatggaattttggattttgagggacgaagtcc 122  Q
    |||||||| |||||||||||||||||||||| ||||||||    
T  7981890 gtctaaacgatggaattttggattttgaggggcgaagtcc 7981851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 7981982 - 7981943
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  7981982 accaccaaaaaattctaaaaatcaaataaaactaatgcaa 7981943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 36981035 - 36980996
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  36981035 accaccaaaaaattctaaaaatcaaataaaactaatgcaa 36980996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 11698099 - 11698141
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  11698099 gggtctaaacgatggaattttggattttgaggggcggagtccc 11698141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 37344618 - 37344652
Alignment:
Q  8 caaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    |||||||||||||||||||||||||| ||||||||    
T  37344618 caaaaaattctaaaaatcaaataaagctaatgcaa 37344652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 42
Target Start/End: Original strand, 38004765 - 38004799
Alignment:
Q  8 caaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||| |||||||||||||||||||||||||    
T  38004765 caaaaaattataaaaatcaaataaagttaatgcaa 38004799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 3095154 - 3095117
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  3095154 caccaaaaaattctaaaaatcaaataaaactaatgcaa 3095117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 9073988 - 9073951
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  9073988 caccaaaaaattctaaaaatcaaataaaactaatgcaa 9073951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 11698011 - 11698048
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  11698011 caccaaaaaattctaaaaatcaaataaaactaatgcaa 11698048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 14163752 - 14163789
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  14163752 caccaaaaaattctaaaaatcaaataaaactaatgcaa 14163789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 17119571 - 17119600
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaa 32  Q
    ||||||||||||||||||||||||||||||    
T  17119571 accaccaaaaaattctaaaaatcaaataaa 17119600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 32
Target Start/End: Original strand, 31519587 - 31519616
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaa 32  Q
    ||||||||||||||||||||||||||||||    
T  31519587 accaccaaaaaattctaaaaatcaaataaa 31519616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 34853782 - 34853745
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  34853782 caccaaaaaattctaaaaatcaaataaaactaatgcaa 34853745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 34854166 - 34854129
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  34854166 caccaaaaaattctaaaaatcaaataaaactaatgcaa 34854129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 42280674 - 42280715
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtcc 122  Q
    |||||||||| |||||||||||||||||||||| || |||||    
T  42280674 gggtctaaacgatggaattttggattttgaggggcggagtcc 42280715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 44106682 - 44106645
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  44106682 caccaaaaaattctaaaaatcaaataaaactaatgcaa 44106645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Complemental strand, 28917149 - 28917109
Alignment:
Q  83 gtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||| |||||||||||||||||||||| || ||||||    
T  28917149 gtctaaacaatggaattttggattttgaggggcggagtccc 28917109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 31234604 - 31234636
Alignment:
Q  81 gggtctaaaccatggaattttggattttgaggg 113  Q
    |||||||||| ||||||||||||||||||||||    
T  31234604 gggtctaaacgatggaattttggattttgaggg 31234636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 31519677 - 31519709
Alignment:
Q  81 gggtctaaaccatggaattttggattttgaggg 113  Q
    |||||||||| ||||||||||||||||||||||    
T  31519677 gggtctaaacaatggaattttggattttgaggg 31519709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 500878 - 500917
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  500878 accaccaaaaaattctaaaaatcaaataaaactaatgcaa 500917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 35345602 - 35345641
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  35345602 accaccaaaaaattctaaaaatcaaataaaactaatgcaa 35345641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 46625196 - 46625157
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  46625196 accaccaaaaaattctaaaaatcaaataaaactaatgcaa 46625157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 49096000 - 49096043
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccct 124  Q
    |||||| ||| ||||||||||||||||||||||||| |||||||    
T  49096000 gggtcttaacgatggaattttggattttgagggacggagtccct 49096043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 29048706 - 29048664
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  29048706 gggtctaaacgatggaattttggattttgaggggcggagtccc 29048664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 3902511 - 3902548
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  3902511 caccaaaaaattctaaaaatcaaataaaactaatgcaa 3902548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 28873471 - 28873434
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  28873471 caccaaaaaattctaaaaatcaaataaaactaatgcaa 28873434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 47739639 - 47739676
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  47739639 caccaaaaaattctaaaaatcaaataaaactaatgcaa 47739676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 32
Target Start/End: Complemental strand, 52777695 - 52777666
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaa 32  Q
    ||||||||||||||||||||||||||||||    
T  52777695 accaccaaaaaattctaaaaatcaaataaa 52777666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 4394355 - 4394323
Alignment:
Q  81 gggtctaaaccatggaattttggattttgaggg 113  Q
    |||||||||| ||||||||||||||||||||||    
T  4394355 gggtctaaacgatggaattttggattttgaggg 4394323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 34821126 - 34821158
Alignment:
Q  81 gggtctaaaccatggaattttggattttgaggg 113  Q
    |||||||||| ||||||||||||||||||||||    
T  34821126 gggtctaaacgatggaattttggattttgaggg 34821158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 39150178 - 39150146
Alignment:
Q  81 gggtctaaaccatggaattttggattttgaggg 113  Q
    |||||||||| ||||||||||||||||||||||    
T  39150178 gggtctaaacgatggaattttggattttgaggg 39150146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 47302395 - 47302363
Alignment:
Q  81 gggtctaaaccatggaattttggattttgaggg 113  Q
    |||||||||| ||||||||||||||||||||||    
T  47302395 gggtctaaacaatggaattttggattttgaggg 47302363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 27670963 - 27670924
Alignment:
Q  3 accaccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  27670963 accaccaaaaaattctaaaaatcaaataaaactaatgcaa 27670924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 17474576 - 17474618
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  17474576 gggtctaaacgatggaattttggattttgaggggcggagtccc 17474618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 33452220 - 33452262
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  33452220 gggtctaaacgatggaattttggattttgaggggcggagtccc 33452262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 41854681 - 41854723
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  41854681 gggtctaaacgatggaattttggattttgaggggcggagtccc 41854723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 42894753 - 42894711
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  42894753 gggtctaaacgatggaattttggattttgaggggcggagtccc 42894711  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 16750134 - 16750171
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  16750134 caccaaaaaattctaaaaatcaaataaaactaatgcaa 16750171  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 16750222 - 16750263
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtcc 122  Q
    |||||||||| |||||||||||||||||||||| || |||||    
T  16750222 gggtctaaacgatggaattttggattttgaggggcggagtcc 16750263  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 17474488 - 17474525
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  17474488 caccaaaaaattctaaaaatcaaataaaactaatgcaa 17474525  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 38308610 - 38308651
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtcc 122  Q
    |||||||||| |||||||||||||||||||||| || |||||    
T  38308610 gggtctaaacaatggaattttggattttgaggggcggagtcc 38308651  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 39447621 - 39447584
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  39447621 caccaaaaaattctaaaaatcaaataaaactaatgcaa 39447584  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 41510120 - 41510157
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  41510120 caccaaaaaattctaaaaatcaaataaaactaatgcaa 41510157  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 45153600 - 45153637
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  45153600 caccaaaaaattctaaaaatcaaataaaactaatgcaa 45153637  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 32187662 - 32187694
Alignment:
Q  81 gggtctaaaccatggaattttggattttgaggg 113  Q
    |||||||||| ||||||||||||||||||||||    
T  32187662 gggtctaaacgatggaattttggattttgaggg 32187694  T

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Target: scaffold0182 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 23349 - 23307
Alignment:
Q  81 gggtctaaaccatggaattttggattttgagggacgaagtccc 123  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  23349 gggtctaaacgatggaattttggattttgaggggcggagtccc 23307  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 141687 - 141724
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  141687 caccaaaaaattctaaaaatcaaataaaactaatgcaa 141724  T

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Target: scaffold0027; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 141777 - 141809
Alignment:
Q  81 gggtctaaaccatggaattttggattttgaggg 113  Q
    |||||||||| ||||||||||||||||||||||    
T  141777 gggtctaaacgatggaattttggattttgaggg 141809  T

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Target: scaffold0018 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 174056 - 174093
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  174056 caccaaaaaattctaaaaatcaaataaaactaatgcaa 174093  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 140940 - 140903
Alignment:
Q  5 caccaaaaaattctaaaaatcaaataaagttaatgcaa 42  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  140940 caccaaaaaattctaaaaatcaaataaaactaatgcaa 140903  T

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Target: scaffold0508 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 3176 - 3208
Alignment:
Q  81 gggtctaaaccatggaattttggattttgaggg 113  Q
    |||||||||| ||||||||||||||||||||||    
T  3176 gggtctaaacgatggaattttggattttgaggg 3208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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