View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3768_high_11 (Length: 258)
Name: NF3768_high_11
Description: NF3768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3768_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 7277917 - 7278158
Alignment:
| Q |
1 |
tcttttgtgcattttacttgtatatttctttagaatcagatttgcttatcaagagataacacgattaaagaaaaggcaacgtgtttacaaaactcaaaca |
100 |
Q |
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| T |
7277917 |
tcttttgtgcattttacttgtatatttctttagaatcagattt-cttatcaagagataacacgattaaagaaaaggcaatgtgtttacaaaactcaaaca |
7278015 |
T |
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| Q |
101 |
aaaggcaattgaaaaatcactttcattgaagtttagttacactg--atcactataaacacatgattgagagacaacaaaattcattacaaatgaaaagac |
198 |
Q |
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| T |
7278016 |
aaaggcaattgaaaagccactttcattgaag-ttagttacactgatatcacaataaacacatgattgagagacaacaaaattcattac------aaagac |
7278108 |
T |
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| Q |
199 |
aagatcattaaagaaagcaaaagtcatcaaatgcaaccattatgtctgtg |
248 |
Q |
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| T |
7278109 |
aagatcattaaacaaagcaaaagtcatcaaatgcaaccattatgtctgtg |
7278158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 118 - 248
Target Start/End: Complemental strand, 7375804 - 7375681
Alignment:
| Q |
118 |
cactttcattgaagtttagttacactgatcactataaacacatgattgagagacaacaaaattcattacaaatgaaaagacaagatcattaaagaaagca |
217 |
Q |
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| T |
7375804 |
cactttctttgaagtt-agttacattgatcacaataaacacatgattgagagacaacaaaattcattacaaa------gacaagatcattaaacaaagca |
7375712 |
T |
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| Q |
218 |
aaagtcatcaaatgcaaccattatgtctgtg |
248 |
Q |
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| T |
7375711 |
aaagtcatcaaatgcaaccattatgtctgtg |
7375681 |
T |
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