View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3768_high_5 (Length: 373)
Name: NF3768_high_5
Description: NF3768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3768_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 43867664 - 43868032
Alignment:
| Q |
1 |
aaaaagtacctactgacactagtgtgtctccttcatcacattgtctagtttcaacaaacacaaaccattaattgaatcannnnnnnnnnngacataaaac |
100 |
Q |
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| T |
43867664 |
aaaaagtacctactgacactagtgtgtctccttcatcacattgtctagtttcaacaaacacaaaccattaattgaatcattttttt----gacataaaac |
43867759 |
T |
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| Q |
101 |
aatatagtttagttatattctatgattatagacatgaaaggtgatgcagatgcaggtgccttgggagccaagacagcaagagcatgtgatagctgtttaa |
200 |
Q |
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| T |
43867760 |
aatatagtttagttatattctatgattatagacatgaaaggtgatgcagatgcaggtgccttgggagccaagacagcaagagcatgtgatagctgtttaa |
43867859 |
T |
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| Q |
201 |
gaagaagagcacgttggttttgtgctgcagatgatgctttcctttgtcatggttgtgacaatttggttcactctgcaaatctattagcaagtagacacga |
300 |
Q |
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| T |
43867860 |
gaagaagagcacgttggttttgtgctgcagatgatgctttcctttgtcatggttgtgacaatttggttcactctgcaaatctattagcaagtagacacga |
43867959 |
T |
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| Q |
301 |
aagggttcgccttcaaaccgcatctgctaaggtaacaacaacagcacaagcatggcacagtggattcacaagg |
373 |
Q |
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| T |
43867960 |
aagggttcgccttcaaaccgcgtctgctaaggtaacaacaacagcacaagcatggcacagtggattcacaagg |
43868032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 259
Target Start/End: Complemental strand, 50056137 - 50056084
Alignment:
| Q |
206 |
agagcacgttggttttgtgctgcagatgatgctttcctttgtcatggttgtgac |
259 |
Q |
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| T |
50056137 |
agagcacgttggtattgtgctgctgatgatgcttttctctgtcaagcttgtgac |
50056084 |
T |
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