View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3768_low_1 (Length: 925)
Name: NF3768_low_1
Description: NF3768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3768_low_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 813; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 813; E-Value: 0
Query Start/End: Original strand, 14 - 907
Target Start/End: Complemental strand, 21244557 - 21243665
Alignment:
| Q |
14 |
cataggcaattggtacctcaccagcctcatcatcaggaaatctattgaaataagtaactcaaatatgaaatattagtagagaagtatcaattgaaaaata |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21244557 |
cataggcaattggtacctcaccagcctcatcatcaggaaatctattgaaataagtaactcaaatatgaaatattaatagagaagtatcaattgaaaaata |
21244458 |
T |
|
| Q |
114 |
attttgttgtccatcacggtgtatttatatggtgtgcgatttcattttttattagctattccgctctctctgtgtcaaatcaatagttataagcgatgat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21244457 |
attttgttgtccatcacggtgtatttatatggtgtgcgatttcattttttattagttgttccgctctctctgtgtcaaatcaatagttataagtgatgat |
21244358 |
T |
|
| Q |
214 |
agttttatacctcaaactaaaactatcatgcaagnnnnnnnacttacgggacaacgacagcatcttgtatttcagggtgagaaacgagtagatcttcaag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21244357 |
agttttatacctcaaactaaaactatcatgcaagtttttttacttacgggacaacgacagcatcttgtatttcagggtgagaaacgagaagatcttcaag |
21244258 |
T |
|
| Q |
314 |
ttctgctggtgcaacctggttaatttcaaaaacacaaatattacatgatgtgaaattccatgcataattaatcattttcacacatagtaaaagggttata |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
21244257 |
ttctgctggtgcaacctggttaatttcaaaaacacaaatattacatgatgtgaaattccctgcataattaatcattttaacacatagtaaaagggttata |
21244158 |
T |
|
| Q |
414 |
aacaaataatcactcaaaaagaggagcttaagaaagattaatgagtaagattactacaattcacacattaagaataataattaggggcatggagcatttg |
513 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
21244157 |
aacaaataatcactcaaaaagaggagcttaagaaagattaatgagtaaaattactacaattgacacattaagaataataatttgggtcatggagcatttg |
21244058 |
T |
|
| Q |
514 |
tttaatgcaaccaataccatatcatctttccaatgctcaagttaacataatagtgacaaagatttgtctaagatttcaaataatgtatagacgaaaatgt |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
21244057 |
tttaatgcaaccaataccatatcatctttccaatgctcaagttaacataatagtgacaaagatttgtctaagatttcagataatgtatagacgaaaatgt |
21243958 |
T |
|
| Q |
614 |
tactttagttactgatatcattttagattacatacctgataacctttgtatttgatcagttctttgatacgatcaacaacataaagtcggccaatctcat |
713 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21243957 |
tactttagttactgatatcattttagattacatacctgataacctttgtatttgatcagttctttgatacgatcaacaacataaagtcggccaatctcat |
21243858 |
T |
|
| Q |
714 |
caaaatatccaagatctccggtatgtacccacccctcattatctaaagtttgttttgtggcctctcgattgttgtaataacctgaaatatttgtatagga |
813 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21243857 |
caaaatatccaagatctccggtatgcacccacccctcattatctaaagtttgttttgtggcctctcgattgttgtaataacctgaaatatttgtatagga |
21243758 |
T |
|
| Q |
814 |
aaagtttcatatgggaaaaatgtacataatacaaataatatgatggcattatgttggaaaaggaccaagaatacatgttgcacgacatgacatg |
907 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
21243757 |
aaagtttcatatgggaaaaatgtacataatacaaataatatgatggcattatgttgg-aaaggaccaagaatacatgttgcacgacatgacatg |
21243665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 402 - 851
Target Start/End: Complemental strand, 21259487 - 21259030
Alignment:
| Q |
402 |
aaaagggttataaacaaataatcactcaaaaagaggagcttaagaaagattaatga-------gtaagattactacaattcacacattaagaataataat |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| |||||||||||| ||||||||||||||||||| |
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|
| T |
21259487 |
aaaagggttataaacaaataatcactcaaaaagaggagcttaagaaatattaattattaataagtaaaattactacaattgacacattaagaataataat |
21259388 |
T |
|
| Q |
495 |
taggggcatggagcatttgtttaatgcaaccaataccatatcatctttccaatgctcaagttaacataatagtgacaaagatttgtctaagatttcaaat |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||||||| || |
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|
| T |
21259387 |
taggggcatggagcatttgtttaatgcaaccaataccatatcatctttccaatgctcaagtaaacataactgtgacaaggatttgggtaagatttcagat |
21259288 |
T |
|
| Q |
595 |
aatgtatag---acgaaaatgttactttagttactgatatcattttagattacatacctgataacctttgtatttgatcagttctttgatacgatcaaca |
691 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| || |||||||||||| |
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| T |
21259287 |
aatgaataataaacgaaaatgttactttagttact-atatcattttagattacataccttataacctttgtacttgatcagttccttcatacgatcaaca |
21259189 |
T |
|
| Q |
692 |
acataaagtcggccaatctcatcaaaatatccaagatctccggtatgtacccacccctcattatctaaagtttgttttgtggcctctcgattgttgtaat |
791 |
Q |
| |
|
||||||||| | || |||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||| ||||||| |||| |
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|
| T |
21259188 |
acataaagttgtccgatctcatcaaaatatccaagatctcctgtatgtacgcacccctcgttacctaaagtttgttttgtggcctctagattgttataat |
21259089 |
T |
|
| Q |
792 |
aacctgaaatatttgtataggaaaagtttcatatgggaaaaatgtacataatacaaataa |
851 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||| | | || |||||||||||||||| |
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| T |
21259088 |
aacctgaatta-ttgtataggaaaagtttcatatggaagatatttacataatacaaataa |
21259030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 743 - 834
Target Start/End: Complemental strand, 21254887 - 21254797
Alignment:
| Q |
743 |
cacccctcattatctaaagtttgttttgtggcctctcgattgttgtaataacctgaaatatttgtataggaaaagtttcatatgggaaaaat |
834 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |
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|
| T |
21254887 |
cacccctcactatctaaagtttgttttgtggcctctcgattgttataataacctgaaata-ttgtataggaaaagtttcatattggaaaaat |
21254797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 743 - 825
Target Start/End: Complemental strand, 21250746 - 21250665
Alignment:
| Q |
743 |
cacccctcattatctaaagtttgttttgtggcctctcgattgttgtaataacctgaaatatttgtataggaaaagtttcatat |
825 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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|
| T |
21250746 |
cacccctcactatctaaagtttgttttgtggcctctcgattgttataataacctgaaata-ttgtataggaaaagtttcatat |
21250665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 21259758 - 21259619
Alignment:
| Q |
14 |
cataggcaattggtacctcaccagcctcatcatcaggaaatctattgaaataagtaactcaaatatgaaatattagtagagaagtatcaattgaaaaa-- |
111 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| || | ||||| |||| || |||||||||||||| |
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|
| T |
21259758 |
cataggcaattgaaacctcaccagcctcatcatcaggaaatctatagcaataagtaactcaaatgtgtattattaatagaaaaatatcaattgaaaaaca |
21259659 |
T |
|
| Q |
112 |
---taattttgttgtccatcacggtgtatttatatggtgt |
148 |
Q |
| |
|
| | ||||||||||| || ||| |||||||||||||| |
|
|
| T |
21259658 |
gttttaatttgttgtccaccatggtatatttatatggtgt |
21259619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 266 - 341
Target Start/End: Complemental strand, 21259573 - 21259498
Alignment:
| Q |
266 |
aacgacagcatcttgtatttcagggtgagaaacgagtagatcttcaagttctgctggtgcaacctggttaatttca |
341 |
Q |
| |
|
||||||| ||||||||||||| || |||||||| || |||||||||||| ||||||| ||||||| |||| ||||| |
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|
| T |
21259573 |
aacgacaacatcttgtatttctggatgagaaacaagaagatcttcaagtgctgctggcgcaacctagttattttca |
21259498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 640 - 800
Target Start/End: Original strand, 40806761 - 40806921
Alignment:
| Q |
640 |
attacatacctgataacctttgtatttgatcagttctttgatacgatcaacaacataaagtcggccaatctcatcaaaatatccaagatctccggtatgt |
739 |
Q |
| |
|
|||||||||||| | ||||| || |||||||||||||||||||| ||||| ||| |||| ||| |||||||||||||||||||||||| |||||| |
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|
| T |
40806761 |
attacatacctggaaccctttatacttgatcagttctttgatacggtcaacgacaaaaagatttccatcctcatcaaaatatccaagatctcccgtatgt |
40806860 |
T |
|
| Q |
740 |
acccacccctcattatctaaagtttgttttgtggcctctcgattgttgtaataacctgaaa |
800 |
Q |
| |
|
|||||||| | ||||||| ||| | ||| ||||| | ||||||||||||||||||||| |
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|
| T |
40806861 |
acccacccttttttatctatagtcaatcttgaggcctgtggattgttgtaataacctgaaa |
40806921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 270 - 330
Target Start/End: Original strand, 40806385 - 40806445
Alignment:
| Q |
270 |
acagcatcttgtatttcagggtgagaaacgagtagatcttcaagttctgctggtgcaacct |
330 |
Q |
| |
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|||||||| |||||||||| |||||||| || ||| |||||||||||||||||||||||| |
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|
| T |
40806385 |
acagcatcaagtatttcaggatgagaaacaagaagaccttcaagttctgctggtgcaacct |
40806445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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