View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3768_low_10 (Length: 279)
Name: NF3768_low_10
Description: NF3768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3768_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 35801618 - 35801753
Alignment:
| Q |
20 |
ccactaaactaagaaatgcacaagtaaagatataacataaagataaatgataaaatttgcnnnnnnnn-tatacttacttaactgattattatgtgtgtc |
118 |
Q |
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| T |
35801618 |
ccactaaactaagaaatgcacaagtaaagatataacataaagataaatgataaaatttgcaaaaaaaaatatacttacttaactgattattatgtgtgtc |
35801717 |
T |
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| Q |
119 |
aaatgaatatatacaatgagatgtttgtttacatac |
154 |
Q |
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| T |
35801718 |
aaatgaatatatacaatgaggtgtttgtttacatac |
35801753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 152 - 269
Target Start/End: Original strand, 35802499 - 35802613
Alignment:
| Q |
152 |
tacaaagctagtcctaccggccaaagcatcgttgcctacaaaatctagccttgttcagttactttcgccagtagagcgtatttcttcatgttgcagcagg |
251 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35802499 |
tacaaagctagtcctaccggccaaagcatcgtggcctacaaaatctagccttgttcagttactttcgccagtagagcgtatttcttcatgtt---gcagg |
35802595 |
T |
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| Q |
252 |
gtgtacgtggtgcctatg |
269 |
Q |
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| T |
35802596 |
gtgtacgtggtgcctatg |
35802613 |
T |
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