View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3768_low_14 (Length: 251)
Name: NF3768_low_14
Description: NF3768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3768_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 5520062 - 5520284
Alignment:
| Q |
19 |
tgagtattaatatggttagaaataatacttcatcagtttcttatataatacaagtcattttagtaaataatacacaaattaatagagatttcaatatgaa |
118 |
Q |
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| T |
5520062 |
tgagtattaatatggttagaaataatacttcatcagtttcttatataatacaagtcattttagtaaataatacacaaattaatagagatttcaatatgaa |
5520161 |
T |
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| Q |
119 |
caaattttgcagggactaaaataaaatacagaagatcaaaagtaaaaagttgtagactcgtataagaacgcaaaaccagaaaattatatatttgcagaaa |
218 |
Q |
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| T |
5520162 |
caaattttgcagggactaaaataaaatacagaagatcaaaagtaaaaagttgtagactcgtataagaacgcaaaaccagaaaattatatatttgcagaga |
5520261 |
T |
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| Q |
219 |
ctaaatgcatatttaaacctatg |
241 |
Q |
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| T |
5520262 |
ctaaatgcatatttaaacctatg |
5520284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 32311804 - 32311863
Alignment:
| Q |
106 |
atttcaatatgaacaaattttgcagggactaaaataaaatacagaagatcaaaagtaaaaa |
166 |
Q |
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| T |
32311804 |
attttaatatgaataaattttgcaaagactaaaataaattaca-aggatcaaaagtaaaaa |
32311863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 10140842 - 10140886
Alignment:
| Q |
102 |
agagatttcaatatgaacaaattttgcagggactaaaataaaata |
146 |
Q |
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| T |
10140842 |
agagacttcaatatgaacatattttgtaggaactaaaataaaata |
10140886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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