View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3768_low_2 (Length: 451)
Name: NF3768_low_2
Description: NF3768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3768_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 51 - 441
Target Start/End: Original strand, 16253482 - 16253872
Alignment:
| Q |
51 |
tgatcagtaaaaatgttggcgaatgtcgatgaatgttgtggtgcataagaattattgtcagattgtatgactgaatttagaacactagattgagcagtaa |
150 |
Q |
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|||| ||||||||||||||| |||||| |||||||||||||| |||||||||||||||| |||||||||||||| | ||||| ||| ||| |||||| |
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| T |
16253482 |
tgatgagtaaaaatgttggcaaatgtctgtgaatgttgtggtgtataagaattattgtcacattgtatgactgaactctgaacatcagactgatcagtaa |
16253581 |
T |
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| Q |
151 |
agatgttggcaaatggcggtgaatgttgtggtgtatgagaattattgtcacattgtatgactggatttttaacattttgatcaagttctggcgttgactt |
250 |
Q |
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| T |
16253582 |
aaagatttgcaaatatcgatgaatgttgtggtgcatgggaattattgtcacattgtatgactgaatttttaacattttgatcaagttctggcgttgactt |
16253681 |
T |
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| Q |
251 |
agcagcttcaagacctaattgtgtttcagtaggaagatgacattgatcttgctttgattttttccttttaccttttggcatttcattcttcaaagcaatt |
350 |
Q |
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| T |
16253682 |
agcagcttcaagacctaactgtgtttcagtaggatgatgacattgatcttgctttgattttttccacttaccttttggcatttcattcttcaaagcaatt |
16253781 |
T |
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| Q |
351 |
ctcaatttctgggaatcaatattcaaatcataatattaaatataaattacaatttaaaatcacacnnnnnnnttactatagaataatctac |
441 |
Q |
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| T |
16253782 |
ctcaatttctgggaatcaatattcaaatcataatattaaatataaattacaatttaaaataacacaaaaaaattactatagaataatctac |
16253872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 48 - 414
Target Start/End: Original strand, 16247900 - 16248264
Alignment:
| Q |
48 |
gactgatcagtaaaaatgttggcgaatgtcgatgaatgttgtggtgcataagaattattgtcagattgtatgactgaatttagaacactagattgagcag |
147 |
Q |
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| T |
16247900 |
gactgatgagtaaaaatgttggcaaatgtctttgaatgttgtggtgcatgagaattattgtcacattctatgactgaattatgaacatcagattgatcag |
16247999 |
T |
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| Q |
148 |
taaagatgttggcaaatggcggtgaatgttgtggtgtatgagaattattgtcacattgtatgactggatttttaacattttgatcaagttctggcgttga |
247 |
Q |
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| T |
16248000 |
taaaaaggtttgcaaatatcgatgaatgttgtggtgcatgagaattattgtcacattgtatgactggagttttaacattttgatcaagttctggcgttga |
16248099 |
T |
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| Q |
248 |
cttagcagcttcaagacctaattgtgtttcagtaggaagatgacattgatcttgctttgattttttccttttaccttttggcatttcattcttcaaagca |
347 |
Q |
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| T |
16248100 |
cttagcagcttcaagacctaattgtgtttcagcaggaagatgacattaatcctgc-ttgatgttttccacttaccttttggcatttcattctttaaagta |
16248198 |
T |
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| Q |
348 |
attctcaatttctgggaatcaatattcaaatcataatattaaatataaattacaatttaaaatcaca |
414 |
Q |
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| T |
16248199 |
agtctcaatttatgcgaatcaatattcaaatcataatattaaatataaattacaa-ttaaaatcaca |
16248264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 16253276 - 16253378
Alignment:
| Q |
1 |
attccataaacagtcaattaaagaactcatcatatggattcatgttggactgatcagtaaaaatgttggcgaatgtcgatgaatgttgtggtgcataaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16253276 |
attccataaacagtcaattaaagaactcatcatatggattcatgttggactgataagtgaaaatgttgccgaatgtcgatgaatgttgtggtgcataaga |
16253375 |
T |
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| Q |
101 |
att |
103 |
Q |
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||| |
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| T |
16253376 |
att |
16253378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 48 - 213
Target Start/End: Original strand, 16253389 - 16253554
Alignment:
| Q |
48 |
gactgatcagtaaaaatgttggcgaatgtcgatgaatgttgtggtgcataagaattattgtcagattgtatgactgaatttagaacactagattgagcag |
147 |
Q |
| |
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|||||| ||||||| |||||||| |||| || ||||||||||||||||| ||||||||||||| ||||||| || |||| ||||| |||||||| || |
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| T |
16253389 |
gactgagcagtaaagatgttggcaaatggcggtgaatgttgtggtgcatgagaattattgtcacattgtataacaaaattctgaacattagattgatgag |
16253488 |
T |
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| Q |
148 |
taaagatgttggcaaatggcggtgaatgttgtggtgtatgagaattattgtcacattgtatgactg |
213 |
Q |
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| T |
16253489 |
taaaaatgttggcaaatgtctgtgaatgttgtggtgtataagaattattgtcacattgtatgactg |
16253554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 16253374 - 16253459
Alignment:
| Q |
123 |
gaatttagaacactagattgagcagtaaagatgttggcaaatggcggtgaatgttgtggtgtatgagaattattgtcacattgtat |
208 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16253374 |
gaatttagaacactagactgagcagtaaagatgttggcaaatggcggtgaatgttgtggtgcatgagaattattgtcacattgtat |
16253459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 56 - 211
Target Start/End: Original strand, 16247729 - 16247883
Alignment:
| Q |
56 |
agtaaaaatgttggcgaatgtcgatgaatgttgtggtgcataagaattattgtcagattgtatgactgaatttagaacactagattgagcagtaaagatg |
155 |
Q |
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|||||| |||||||| ||||||| ||||||||||||||||| ||||||||||||| |||||||||||| ||| | |||| |||| ||| ||||| | ||| |
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| T |
16247729 |
agtaaagatgttggcaaatgtcggtgaatgttgtggtgcatgagaattattgtcacattgtatgactg-attcataacattagaatgatcagtacaaatg |
16247827 |
T |
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| Q |
156 |
ttggcaaatggcggtgaatgttgtggtgtatgagaattattgtcacattgtatgac |
211 |
Q |
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|| | |||| ||||||||||||| ||| |||| |||||||||||||||||||||| |
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| T |
16247828 |
ttagtcaatgtcggtgaatgttgttgtgcatgataattattgtcacattgtatgac |
16247883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 51 - 213
Target Start/End: Original strand, 16247813 - 16247975
Alignment:
| Q |
51 |
tgatcagtaaaaatgttggcgaatgtcgatgaatgttgtggtgcataagaattattgtcagattgtatgactgaatttagaacactagattgagcagtaa |
150 |
Q |
| |
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||||||||| ||||||| | ||||||| |||||||||| |||||| | ||||||||||| |||||||||| |||| |||| |||| ||| ||||| |
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| T |
16247813 |
tgatcagtacaaatgttagtcaatgtcggtgaatgttgttgtgcatgataattattgtcacattgtatgacaaaattctaaacattagactgatgagtaa |
16247912 |
T |
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| Q |
151 |
agatgttggcaaatggcggtgaatgttgtggtgtatgagaattattgtcacattgtatgactg |
213 |
Q |
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| T |
16247913 |
aaatgttggcaaatgtctttgaatgttgtggtgcatgagaattattgtcacattctatgactg |
16247975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 141 - 213
Target Start/End: Original strand, 16247724 - 16247796
Alignment:
| Q |
141 |
tgagcagtaaagatgttggcaaatggcggtgaatgttgtggtgtatgagaattattgtcacattgtatgactg |
213 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
16247724 |
tgagaagtaaagatgttggcaaatgtcggtgaatgttgtggtgcatgagaattattgtcacattgtatgactg |
16247796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 16253569 - 16253649
Alignment:
| Q |
48 |
gactgatcagtaaaaatgttggcgaatgtcgatgaatgttgtggtgcataagaattattgtcagattgtatgactgaattt |
128 |
Q |
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|||||||||||||||| || || ||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
16253569 |
gactgatcagtaaaaagatttgcaaatatcgatgaatgttgtggtgcatgggaattattgtcacattgtatgactgaattt |
16253649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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