View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3768_low_3 (Length: 434)

Name: NF3768_low_3
Description: NF3768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3768_low_3
NF3768_low_3
[»] chr1 (22 HSPs)
chr1 (220-434)||(9318493-9318707)
chr1 (218-434)||(9255231-9255447)
chr1 (220-434)||(9319595-9319809)
chr1 (220-434)||(9349912-9350126)
chr1 (261-434)||(9348752-9348925)
chr1 (250-421)||(8931821-8931992)
chr1 (250-421)||(8955743-8955914)
chr1 (305-421)||(8920471-8920587)
chr1 (278-403)||(9454061-9454186)
chr1 (278-377)||(9433100-9433199)
chr1 (261-377)||(9486452-9486568)
chr1 (306-421)||(8941793-8941908)
chr1 (305-403)||(9399407-9399505)
chr1 (314-380)||(11005279-11005345)
chr1 (309-403)||(9488332-9488426)
chr1 (314-355)||(10993988-10994029)
chr1 (309-377)||(9143131-9143199)
chr1 (305-377)||(9152684-9152756)
chr1 (313-377)||(9234322-9234386)
chr1 (313-383)||(9384008-9384078)
chr1 (317-355)||(10901443-10901481)
chr1 (309-377)||(8874328-8874396)
[»] chr6 (1 HSPs)
chr6 (224-421)||(15927412-15927609)
[»] chr3 (2 HSPs)
chr3 (220-434)||(9159285-9159499)
chr3 (138-190)||(9159218-9159270)
[»] chr4 (1 HSPs)
chr4 (309-371)||(27692211-27692273)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 220 - 434
Target Start/End: Complemental strand, 9318707 - 9318493
Alignment:
Q  220 tcaatttcataagagttgacgttgagatcttcttgaatcagttcatttggatacagagaaggctttggtggcatttcgatattcgcaatatctccttcaa 319  Q
    |||||||||| |||||||||||  || ||||| ||||||| |||||||||||||| ||| |||||||| |||||||| |||||  |||||| ||||||||    
T  9318707 tcaatttcattagagttgacgtcaaggtcttcctgaatcatttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttccttcaa 9318608  T
Q  320 gcatctctatcactttgtccattgaaggacgatcacatggtttcaattgtatacaccataatgctattctgaacatcttcttcacattattattttcctc 419  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  9318607 gcatctctatcactttgttcattgaaggacgatcacatggtttcaattgtatacaccataatgcaattatgaacatcttcttcacattattattttcctc 9318508  T
Q  420 atatgtaatttcatc 434  Q
     ||||||||||||||    
T  9318507 gtatgtaatttcatc 9318493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 218 - 434
Target Start/End: Complemental strand, 9255447 - 9255231
Alignment:
Q  218 catcaatttcataagagttgacgttgagatcttcttgaatcagttcatttggatacagagaaggctttggtggcatttcgatattcgcaatatctccttc 317  Q
    ||||| |||||| ||||||||| |  | |||| | ||||||| |||||||||||||||  |||||||||| |||||||| | |||| |||||||||||||    
T  9255447 catcagtttcatgagagttgacttcaatatctccatgaatcatttcatttggatacagtaaaggctttggaggcatttcaacattctcaatatctccttc 9255348  T
Q  318 aagcatctctatcactttgtccattgaaggacgatcacatggtttcaattgtatacaccataatgctattctgaacatcttcttcacattattattttcc 417  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9255347 aagcatctctatcactttattcattgagggacgatcacatggtttcaattgtatacaccataatgctattatgaacatcttcttcacattattattttcc 9255248  T
Q  418 tcatatgtaatttcatc 434  Q
    |||||||||||||||||    
T  9255247 tcatatgtaatttcatc 9255231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 220 - 434
Target Start/End: Original strand, 9319595 - 9319809
Alignment:
Q  220 tcaatttcataagagttgacgttgagatcttcttgaatcagttcatttggatacagagaaggctttggtggcatttcgatattcgcaatatctccttcaa 319  Q
    |||||||||| |||||||| ||  || ||||| ||||||| |||||||||||||| ||| |||||||| |||||||| |||||  |||||| ||||||||    
T  9319595 tcaatttcattagagttgatgtcaaggtcttcctgaatcatttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttccttcaa 9319694  T
Q  320 gcatctctatcactttgtccattgaaggacgatcacatggtttcaattgtatacaccataatgctattctgaacatcttcttcacattattattttcctc 419  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  9319695 gcatctctatcactttgttcattgaaggacgatcacatggtttcaattgtatacaccataatgctattatgaacatcttcttcacattaatattttcctc 9319794  T
Q  420 atatgtaatttcatc 434  Q
    |||||  ||||||||    
T  9319795 atatgagatttcatc 9319809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 220 - 434
Target Start/End: Original strand, 9349912 - 9350126
Alignment:
Q  220 tcaatttcataagagttgacgttgagatcttcttgaatcagttcatttggatacagagaaggctttggtggcatttcgatattcgcaatatctccttcaa 319  Q
    |||||||||| |||||||| ||  || ||||| ||||||| |||||||||||||| ||| |||||||| |||||||| |||||  |||||| ||||||||    
T  9349912 tcaatttcattagagttgatgtcaaggtcttcctgaatcatttcatttggatacaaagagggctttggaggcatttcaatattttcaatatttccttcaa 9350011  T
Q  320 gcatctctatcactttgtccattgaaggacgatcacatggtttcaattgtatacaccataatgctattctgaacatcttcttcacattattattttcctc 419  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  9350012 gcatctctatcactttgttcattgaaggacgatcacatggtttcaattgtatacaccataatgctattatgaacatcttcttcacattaatattttcctc 9350111  T
Q  420 atatgtaatttcatc 434  Q
    |||||  ||||||||    
T  9350112 atatgagatttcatc 9350126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 261 - 434
Target Start/End: Complemental strand, 9348925 - 9348752
Alignment:
Q  261 ttcatttggatacagagaaggctttggtggcatttcgatattcgcaatatctccttcaagcatctctatcactttgtccattgaaggacgatcacatggt 360  Q
    ||||| |||||| |||||||||||||| |||||||| |||| | ||||||||||||| ||||||||||| ||||| | ||||| ||||||||||| ||||    
T  9348925 ttcatctggataaagagaaggctttggaggcatttcaatatcctcaatatctccttcgagcatctctattactttattcattgcaggacgatcacttggt 9348826  T
Q  361 ttcaattgtatacaccataatgctattctgaacatcttcttcacattattattttcctcatatgtaatttcatc 434  Q
    || || ||||||||||||||||| ||| ||||||| |||||||||||| | ||||||||||  |||||||||||    
T  9348825 tttaactgtatacaccataatgcaattatgaacattttcttcacattactgttttcctcatcagtaatttcatc 9348752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 250 - 421
Target Start/End: Original strand, 8931821 - 8931992
Alignment:
Q  250 tcttgaatcagttcatttggatacagagaaggctttggtggcatttcgatattcgcaatatctccttcaagcatctctatcactttgtccattgaaggac 349  Q
    |||||||| | |||| |||||||  ||||||||||||| || ||||| || |   ||||||||||||||||||| ||||| ||| |||||||||||||||    
T  8931821 tcttgaataatttcagttggatatggagaaggctttggaggaatttcaatgtcttcaatatctccttcaagcatttctattactctgtccattgaaggac 8931920  T
Q  350 gatcacatggtttcaattgtatacaccataatgctattctgaacatcttcttcacattattattttcctcat 421  Q
    |||||   || ||||||||||||||||| |  || ||| ||||||||||||||||||| || ||||||||||    
T  8931921 gatcaatagggttcaattgtatacaccacagagcaattatgaacatcttcttcacatttttcttttcctcat 8931992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 250 - 421
Target Start/End: Original strand, 8955743 - 8955914
Alignment:
Q  250 tcttgaatcagttcatttggatacagagaaggctttggtggcatttcgatattcgcaatatctccttcaagcatctctatcactttgtccattgaaggac 349  Q
    |||||||| | |||| |||||||  ||||||| ||||| || ||||| ||||   ||||||||||||||||||| ||||| ||| |||||||||||||||    
T  8955743 tcttgaataatttcagttggatatggagaaggttttggaggaatttcaatatcttcaatatctccttcaagcatttctattactctgtccattgaaggac 8955842  T
Q  350 gatcacatggtttcaattgtatacaccataatgctattctgaacatcttcttcacattattattttcctcat 421  Q
    |||||   || ||||||||||||||||| |  || ||| ||||||||||||||||||| || ||||||||||    
T  8955843 gatcaatagggttcaattgtatacaccacagagcaattatgaacatcttcttcacatttttcttttcctcat 8955914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 305 - 421
Target Start/End: Original strand, 8920471 - 8920587
Alignment:
Q  305 caatatctccttcaagcatctctatcactttgtccattgaaggacgatcacatggtttcaattgtatacaccataatgctattctgaacatcttcttcac 404  Q
    ||||||||||||||||||| ||||| ||| ||| ||||||||||||||||   || |||||||||||||||||||  || ||| ||||||||||||||||    
T  8920471 caatatctccttcaagcatttctattactctgtacattgaaggacgatcaatagggttcaattgtatacaccatatagcaattatgaacatcttcttcac 8920570  T
Q  405 attattattttcctcat 421  Q
    ||| || ||||||||||    
T  8920571 atttttcttttcctcat 8920587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 278 - 403
Target Start/End: Complemental strand, 9454186 - 9454061
Alignment:
Q  278 aaggctttggtggcatttcgatattcgcaatatctccttcaagcatctctatcactttgtccattgaaggacgatcacatggtttcaattgtatacacca 377  Q
    |||||||||| |||||||| |||||  ||||||||||||||||||||||||  ||||| | ||||||||||||||||   |||||||| |||||||||||    
T  9454186 aaggctttggaggcatttccatattttcaatatctccttcaagcatctctactacttttttcattgaaggacgatcaatgggtttcaactgtatacacca 9454087  T
Q  378 taatgctattctgaacatcttcttca 403  Q
    |||| | | | ||||||| |||||||    
T  9454086 taatccaactatgaacattttcttca 9454061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 278 - 377
Target Start/End: Complemental strand, 9433199 - 9433100
Alignment:
Q  278 aaggctttggtggcatttcgatattcgcaatatctccttcaagcatctctatcactttgtccattgaaggacgatcacatggtttcaattgtatacacca 377  Q
    |||||||||| |||||||| |||||  ||||||||||||||||||||||||  ||||||| ||||||||||||||||   |||||||| |||||||||||    
T  9433199 aaggctttggaggcatttcaatattttcaatatctccttcaagcatctctactactttgttcattgaaggacgatcaacgggtttcaactgtatacacca 9433100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 261 - 377
Target Start/End: Complemental strand, 9486568 - 9486452
Alignment:
Q  261 ttcatttggatacagagaaggctttggtggcatttcgatattcgcaatatctccttcaagcatctctatcactttgtccattgaaggacgatcacatggt 360  Q
    ||||| |||||| ||  |||||||||| || ||||| |||||  ||||||||||||||||||||||||  ||||||| ||||||||||||||||   |||    
T  9486568 ttcatgtggatatagtaaaggctttggaggtatttcaatattttcaatatctccttcaagcatctctactactttgttcattgaaggacgatcaatgggt 9486469  T
Q  361 ttcaattgtatacacca 377  Q
    ||||| |||||||||||    
T  9486468 ttcaactgtatacacca 9486452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 421
Target Start/End: Original strand, 8941793 - 8941908
Alignment:
Q  306 aatatctccttcaagcatctctatcactttgtccattgaaggacgatcacatggtttcaattgtatacaccataatgctattctgaacatcttcttcaca 405  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||| |||   || ||||||||||||||||| || || | | ||||||| |||||||||    
T  8941793 aatatctacttcaagcatttctattactttgtccattgaaggacggtcattgggcttcaattgtatacaccacaaagcaactatgaacattttcttcaca 8941892  T
Q  406 ttattattttcctcat 421  Q
    || || ||||||||||    
T  8941893 ttttttttttcctcat 8941908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 403
Target Start/End: Original strand, 9399407 - 9399505
Alignment:
Q  305 caatatctccttcaagcatctctatcactttgtccattgaaggacgatcacatggtttcaattgtatacaccataatgctattctgaacatcttcttca 403  Q
    ||||||| ||||||||||||||||  ||||||| ||||||||||||||||   |||||||| ||||||||||| | ||| | | ||||||| |||||||    
T  9399407 caatatccccttcaagcatctctactactttgttcattgaaggacgatcaatgggtttcaactgtatacaccaaagtgcaactatgaacattttcttca 9399505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 314 - 380
Target Start/End: Complemental strand, 11005345 - 11005279
Alignment:
Q  314 cttcaagcatctctatcactttgtccattgaaggacgatcacatggtttcaattgtatacaccataa 380  Q
    ||||||||||||| |||||||| ||||||||||||||||||| ||||||    ||||||||||||||    
T  11005345 cttcaagcatctcaatcactttatccattgaaggacgatcacctggttttgtctgtatacaccataa 11005279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 403
Target Start/End: Original strand, 9488332 - 9488426
Alignment:
Q  309 atctccttcaagcatctctatcactttgtccattgaaggacgatcacatggtttcaattgtatacaccataatgctattctgaacatcttcttca 403  Q
    |||||||||||| | ||| | |||||||| ||| ||||||||||||  ||||||||  ||||||||||||||||| | | | | |||||||||||    
T  9488332 atctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttca 9488426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 355
Target Start/End: Complemental strand, 10994029 - 10993988
Alignment:
Q  314 cttcaagcatctctatcactttgtccattgaaggacgatcac 355  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  10994029 cttcaagcatctcaatcactttatccattgaaggacgatcac 10993988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 9143199 - 9143131
Alignment:
Q  309 atctccttcaagcatctctatcactttgtccattgaaggacgatcacatggtttcaattgtatacacca 377  Q
    ||||||||| |||||||| |  ||||||| |||||| || ||||||  |||||||||||||||||||||    
T  9143199 atctccttcgagcatctccactactttgttcattgaggggcgatcagctggtttcaattgtatacacca 9143131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 377
Target Start/End: Complemental strand, 9152756 - 9152684
Alignment:
Q  305 caatatctccttcaagcatctctatcactttgtccattgaaggacgatcacatggtttcaattgtatacacca 377  Q
    |||||||| ||||||||||||  |  ||||||  |||||| |||| |||| ||||||||||||||||||||||    
T  9152756 caatatcttcttcaagcatctacactactttgctcattgagggacaatcatatggtttcaattgtatacacca 9152684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 377
Target Start/End: Complemental strand, 9234386 - 9234322
Alignment:
Q  313 ccttcaagcatctctatcactttgtccattgaaggacgatcacatggtttcaattgtatacacca 377  Q
    |||||||||||||| |  ||||||| |||||||||||||||||  |||||||| || ||||||||    
T  9234386 ccttcaagcatctcaactactttgttcattgaaggacgatcactcggtttcaactgaatacacca 9234322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 383
Target Start/End: Original strand, 9384008 - 9384078
Alignment:
Q  313 ccttcaagcatctctatcactttgtccattgaaggacgatcacatggtttcaattgtatacaccataatgc 383  Q
    |||||||||||||| |  ||||||| ||||| |||||||||||  |||||||| || |||||||| |||||    
T  9384008 ccttcaagcatctcaactactttgttcattgtaggacgatcactcggtttcaactgaatacaccaaaatgc 9384078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 10901443 - 10901481
Alignment:
Q  317 caagcatctctatcactttgtccattgaaggacgatcac 355  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  10901443 caagcatctcaatcactttatccattgaaggacgatcac 10901481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 8874396 - 8874328
Alignment:
Q  309 atctccttcaagcatctctatcactttgtccattgaaggacgatcacatggtttcaattgtatacacca 377  Q
    ||||||||| |||||||| |  || |||  ||||||||| ||||||  |||||||||||||||||||||    
T  8874396 atctccttcgagcatctccactaccttgatcattgaagggcgatcatctggtttcaattgtatacacca 8874328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 224 - 421
Target Start/End: Complemental strand, 15927609 - 15927412
Alignment:
Q  224 tttcataagagttgacgttgagatcttcttgaatcagttcatttggatacagagaaggctttggtggcatttcgatattcgcaatatctccttcaagcat 323  Q
    |||||| |||||||||||  || ||||| | ||||| |||||||||||||| ||| |||||||| |||||||| | |||| |||||||||||||||||||    
T  15927609 tttcattagagttgacgtcaaggtcttcctcaatcatttcatttggatacaaagagggctttggaggcatttcaacattctcaatatctccttcaagcat 15927510  T
Q  324 ctctatcactttgtccattgaaggacgatcacatggtttcaattgtatacaccataatgctattctgaacatcttcttcacattattattttcctcat 421  Q
    |||||||||| ||| ||||||||||||||||| |||||| ||||| ||||||||||||||  || ||||||| || |||||||||||  |||||||||    
T  15927509 ctctatcactctgttcattgaaggacgatcacttggttttaattgaatacaccataatgcagttatgaacattttattcacattatttctttcctcat 15927412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 220 - 434
Target Start/End: Original strand, 9159285 - 9159499
Alignment:
Q  220 tcaatttcataagagttgacgttgagatcttcttgaatcagttcatttggatacagagaaggctttggtggcatttcgatattcgcaatatctccttcaa 319  Q
    |||||||||| ||| ||||| |  || ||||| | ||| | |||||||||| | | |||||| ||||| |||||||| |||||| |||||| |||||| |    
T  9159285 tcaatttcattagacttgacttctaggtcttcctcaataatttcatttggacagaaagaaggttttggaggcatttcaatattctcaatatttccttcga 9159384  T
Q  320 gcatctctatcactttgtccattgaaggacgatcacatggtttcaattgtatacaccataatgctattctgaacatcttcttcacattattattttcctc 419  Q
    |||||||||| ||||||| ||||| ||||||||||| |||||| || ||||||||||||||||| ||| ||||||| |||||||||||| |  |||||||    
T  9159385 gcatctctattactttgttcattgcaggacgatcacttggttttaactgtatacaccataatgcaattatgaacattttcttcacattactgctttcctc 9159484  T
Q  420 atatgtaatttcatc 434  Q
    ||  |||||||||||    
T  9159485 atcagtaatttcatc 9159499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 9159218 - 9159270
Alignment:
Q  138 tcatcaagaagaattcatcaataaaggctctgttgtagtttcctcaataaaac 190  Q
    |||||||| ||||||||||||||| ||||||||||||  ||||||||||||||    
T  9159218 tcatcaagcagaattcatcaataagggctctgttgtatcttcctcaataaaac 9159270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 371
Target Start/End: Original strand, 27692211 - 27692273
Alignment:
Q  309 atctccttcaagcatctctatcactttgtccattgaaggacgatcacatggtttcaattgtat 371  Q
    ||||||||||||||| ||||||||||  | |||||| |||||||||  |||||||| ||||||    
T  27692211 atctccttcaagcatatctatcacttcattcattgagggacgatcatctggtttcatttgtat 27692273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University