View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3768_low_6 (Length: 368)
Name: NF3768_low_6
Description: NF3768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3768_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 351
Target Start/End: Complemental strand, 39996891 - 39996553
Alignment:
| Q |
13 |
aatatacttttaccagcccccaaaaaactggcttccctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgttttat |
112 |
Q |
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| T |
39996891 |
aatatacttttaccagcccccaaaaaactggcttacctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgttttat |
39996792 |
T |
|
| Q |
113 |
ccacttgccggtcgtttacactcgaaaggaaatggtcgttttgatcttgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgttaacat |
212 |
Q |
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| T |
39996791 |
ccacttgccggtcgtttacactcgaaaggaaatggtcgttttgatctcgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgttaacat |
39996692 |
T |
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| Q |
213 |
tatccgaactaggtgacttttcaccttcttcagaatattaccgttaccttatcccacacattgattacacactcccaatggaagatattccactggttat |
312 |
Q |
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| T |
39996691 |
tatccgaactaggtgacttttcaccttcttcggaatattaccgttaccttatcccacacattgattacacactcccaatggaagatattccactggttat |
39996592 |
T |
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| Q |
313 |
cgttcaactcacaaattttaactgcggtgtagttagtat |
351 |
Q |
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| T |
39996591 |
ctttcaactcacaaattttaattgcggtgtagttagtat |
39996553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 53036708 - 53037021
Alignment:
| Q |
17 |
tacttttaccagcccccaaaaaactggcttccctcccccactaaaatcgccaccactttgaaagagtcattaagcaaagtccttgtgccgttttatccac |
116 |
Q |
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|||||||||| |||||| |||| |||||| ||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
53036708 |
tacttttaccgccccccacaaaaatggcttacctcccccaataaaatcgccaccactttgaaagactcattgagcaaagtccttgtgccgttttatccac |
53036807 |
T |
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| Q |
117 |
ttgccggtcgtttacactcgaaaggaaatggtcgttttgatcttgaatgcaactcattgggtgttcaattcatcgaagcacaatcctcgttaacattatc |
216 |
Q |
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| T |
53036808 |
tagccggtcgtttacaatggaaagaaagcggtcgttttgatgtcgaatgcaactcattgggtgctcaattcatcgaagcagaatcgtcgttaaccttatc |
53036907 |
T |
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| Q |
217 |
cgaactaggtgacttttcaccttcttcagaatattaccgttaccttatcccacacattgattacacactcccaatggaagatattccactggttatcgtt |
316 |
Q |
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|||||||||||||||||||||||||| |||||||| | |||||||||||| ||||| |||||||||| |||||| ||||| |||||| ||||||| ||| |
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| T |
53036908 |
cgaactaggtgacttttcaccttcttgtgaatattatccttaccttatcccgcacatcgattacacacgcccaattgaagacattccattggttattgtt |
53037007 |
T |
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| Q |
317 |
caactcacaaattt |
330 |
Q |
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|| ||||||||||| |
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| T |
53037008 |
cagctcacaaattt |
53037021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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