View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3768_low_7 (Length: 335)
Name: NF3768_low_7
Description: NF3768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3768_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 37800222 - 37799942
Alignment:
| Q |
14 |
gaaggacaaaattctctattggtgggaatcctaatcctttgactgaggatctacatcacgctgttaagaatctctctgctgagctttacgcaaaggatgt |
113 |
Q |
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| T |
37800222 |
gaaggacaaaattctctattggtgggaatcctaatcctttgactgaggatctacatcacgctgttaagaatctctctgctgagctttatgcaaaggatgt |
37800123 |
T |
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| Q |
114 |
ccatttcctaatggagctcatacaagtacactcattatctttaatttcatcctcttttctttctttttgtaatcttgcatgcatgcatgc---------- |
203 |
Q |
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| T |
37800122 |
ccatttcctaatggagctcatacaagtacactcattatctttaatttcatcttcttttctatctttttgtaatcttgcatgcatgcatgcataagtatga |
37800023 |
T |
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| Q |
204 |
-----atatacgttttgaaaattttattttattctttttgagtagcttcagttacgcatactacgatcatgctcgttcttc |
279 |
Q |
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| T |
37800022 |
atgatatatacgttttgaaaattttattttattctttttgagtagcttcagttacgcatactatgatcatgctcgttcttc |
37799942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 144
Target Start/End: Original strand, 3008082 - 3008198
Alignment:
| Q |
28 |
tctattggtgggaatcctaatcctttgactgaggatctacatcacgctgttaagaatctctctgctgagctttacgcaaaggatgtccatttcctaatgg |
127 |
Q |
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| T |
3008082 |
tctattggtgggaaacctaatccattgacttatgatctccatcatgcagtcaagaatctctctgccgagctttacgccaaagatgttcattttctcatgg |
3008181 |
T |
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| Q |
128 |
agctcatacaagtacac |
144 |
Q |
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| T |
3008182 |
aactcattcaagtacac |
3008198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 144
Target Start/End: Complemental strand, 2925586 - 2925473
Alignment:
| Q |
31 |
attggtgggaatcctaatcctttgactgaggatctacatcacgctgttaagaatctctctgctgagctttacgcaaaggatgtccatttcctaatggagc |
130 |
Q |
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| T |
2925586 |
attggtgggaaacctaatccattgactgaagatcttcatcatgctgtcaaaaatctctttgcggaactttacgccaaagatgttcacttcctcatggaac |
2925487 |
T |
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| Q |
131 |
tcatacaagtacac |
144 |
Q |
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|||| ||||||||| |
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| T |
2925486 |
tcattcaagtacac |
2925473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 2935437 - 2935317
Alignment:
| Q |
14 |
gaaggacaaaattctctattggtgggaatcctaatcctttgactgaggatctacatcacgctgttaagaatctctctgctgagctttacgcaaaggatgt |
113 |
Q |
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|||||| ||| ||||| |||||||| ||||| || |||||||||||||| || || || ||||| ||||||||||| | ||| || || | | ||||| |
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| T |
2935437 |
gaaggaaaaagttctccattggtggcaatccaaaccctttgactgaggaccttcaccaagctgtcaagaatctctcagatgaactatataccagagatgt |
2935338 |
T |
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| Q |
114 |
ccatttcctaatggagctcat |
134 |
Q |
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| T |
2935337 |
tcatttcctaatggagctcat |
2935317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 28029467 - 28029338
Alignment:
| Q |
14 |
gaaggacaaaattctctattggtgggaatcctaatcctttgactgaggatctacatcacgctgttaagaatctctctgctgagctttacgcaaaggatgt |
113 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||||| || |||||||| ||||| ||||| |
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| T |
28029467 |
gaaggacaaagttctctattggtggaaatcctaatcctttgactgaggatcttcatcatgccgttaagaatctctccgccgagctttatgcaaaagatgt |
28029368 |
T |
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| Q |
114 |
ccatttcctaatggagctcatacaagtaca |
143 |
Q |
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| T |
28029367 |
tcatttcctgatggaactgattcaagtaca |
28029338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 1502039 - 1502166
Alignment:
| Q |
14 |
gaaggacaaaattctctattggtgggaatcctaatcctttgactgaggatctacatcacgctgttaagaatctctctgctgagctttacgcaaaggatgt |
113 |
Q |
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|||||||||| ||||||||||| ||| | ||||||| ||||||| ||||||| ||| | ||||| ||||||||||| ||||| ||||| ||||| ||||| |
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| T |
1502039 |
gaaggacaaagttctctattggaggggaacctaatcttttgactcaggatcttcataatgctgtcaagaatctctcagctgaactttatgcaaaagatgt |
1502138 |
T |
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| Q |
114 |
ccatttcctaatggagctcatacaagta |
141 |
Q |
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| T |
1502139 |
tcattttcttatggagcttattcaagta |
1502166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 4911593 - 4911680
Alignment:
| Q |
14 |
gaaggacaaaattctctattggtgggaatcctaatcctttgactgaggatctacatcacgctgttaagaatctctctgctgagcttta |
101 |
Q |
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|||||| ||||||||||||||| ||||| || || ||||||| ||| ||||| ||||| ||||||||||||||||||||||| ||||| |
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| T |
4911593 |
gaaggagaaaattctctattggcgggaaaccaaaccctttgattgaagatcttcatcaagctgttaagaatctctctgctgaacttta |
4911680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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