View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3770_high_1 (Length: 1672)

Name: NF3770_high_1
Description: NF3770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3770_high_1
NF3770_high_1
[»] chr7 (25 HSPs)
chr7 (709-1577)||(8356335-8357203)
chr7 (282-707)||(8355782-8356207)
chr7 (39-286)||(8355517-8355761)
chr7 (1349-1577)||(8365320-8365549)
chr7 (10-178)||(8482621-8482788)
chr7 (1054-1249)||(8351491-8351686)
chr7 (1054-1255)||(8412762-8412961)
chr7 (1289-1470)||(8351749-8351935)
chr7 (679-830)||(8433167-8433316)
chr7 (1574-1652)||(8357806-8357884)
chr7 (1469-1577)||(8351999-8352107)
chr7 (1289-1366)||(8413019-8413097)
chr7 (1123-1254)||(8365084-8365211)
chr7 (1158-1248)||(8427496-8427586)
chr7 (1574-1637)||(8366210-8366272)
chr7 (771-824)||(8362239-8362292)
chr7 (1001-1122)||(8364866-8364984)
chr7 (1583-1635)||(8353211-8353263)
chr7 (1289-1399)||(8531730-8531847)
chr7 (749-810)||(8419317-8419380)
chr7 (773-824)||(8406351-8406402)
chr7 (1185-1247)||(8531503-8531565)
chr7 (81-149)||(37485994-37486059)
chr7 (752-810)||(8342901-8342961)
chr7 (771-824)||(8415718-8415771)
[»] chr4 (2 HSPs)
chr4 (1329-1466)||(7287171-7287306)
chr4 (1471-1546)||(7287047-7287122)
[»] scaffold0141 (1 HSPs)
scaffold0141 (1029-1108)||(8943-9022)


Alignment Details
Target: chr7 (Bit Score: 748; Significance: 0; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 709 - 1577
Target Start/End: Original strand, 8356335 - 8357203
Alignment:
Q  709 ctcaacagctataagtaatgtaacagtgaatgatgttatacgttggttttataacaaaactcactcactatatttcacaaagttcctatgtgggacttgt 808  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8356335 ctcaacagctataagtaatgtaacaatgaatgatgttatacgttggttttataacaaaactcactcactatatttcacaaagttcctatgtgggacttgt 8356434  T
Q  809 tttttgttttcaaattgtcactatgctattagctacctgcaagtatggaataatatatcctttcatgtaacaacaaacaaattatatgaacnnnnnnnca 908  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||       ||    
T  8356435 tttttgttttcaaattgtcactatgctattagctacctgcaagtatggaataatatatccttccatgtaacaacaaacaaattatatgaacaaaaaaaca 8356534  T
Q  909 caagttaggtgacaaaacccaaacacgtagtaagactaagccactgaaaatgctaaaaatgcttcatgcgattaaaagatgagaaagaagatggtaatca 1008  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8356535 caagttaggtgacaaaacccaaacacgtagtaagactaagccactgaaaatgctaaaaatgcttcatgcgattaaaagatgagaaagaagatggtaatca 8356634  T
Q  1009 taaacatctgaaataatgcaaagcacaaattctttcagcttcacaaggctgcaccataaatgctaaaaatgattcatgcgattaagtaacatatcatttc 1108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8356635 taaacatctgaaataatgcaaagcacaaattctttcagcttcacaaggctgcaacataaatgctaaaaatgattcatgcgattaagtaacatatcatttc 8356734  T
Q  1109 cttgtagaaataagaacagatgtttcaatctttttctaatcatgttccgatctaaaattcatcatgagaaatactaaaggagatgcgaaaacataaacca 1208  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8356735 cttgtagaaataagaacaaatgcttcaatctttttctaatcatgttccgatctaaaattcatcatgagaaatactaaaggagatgcgaaaaaataaacca 8356834  T
Q  1209 cgacatcagaaactacagttactgctacatgcattcattctctaaaaatatagtttgattcagatactgacacctttagtgtggttttggtctcgtttaa 1308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||    
T  8356835 cgacatcagaaactacagttactgctacatgcattcattctctaaaaatatagtttgattcagatactgacaacttta--gtggttttggtctcgtttaa 8356932  T
Q  1309 aaatctagtcatcaaattattatgttctaaaaggtataac-caattcctgtaatttctagtatttttacaatgttggattagattctaggacgacgaagg 1407  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8356933 aaatctagtcatcaaattattatgttctaaaaggtataactcaattcctgtaatttctagtatttttacaatgttgaattagattctaggacgacgaagg 8357032  T
Q  1408 ca-tataaacattttcggccagtgttttgtgacataatagttatggagtgttttattttgattagccaaagtaaattataacaacgattatttaaataag 1506  Q
    || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||    
T  8357033 cagtataaacattttcgaccagtgttttgtgacataatagttatggagtgttttattttgatta-acaaagtaaattataacaacgataatttaaataag 8357131  T
Q  1507 cataagttcagatcatatataggtgctataaacataaacataataaaacttgtcaa-agaacaatcaaagag 1577  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||  ||| |||||||||||||||    
T  8357132 cataagttcagatcatacataggtgctataaacatgaacataataaaactttgcaacagaacaatcaaagag 8357203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 282 - 707
Target Start/End: Original strand, 8355782 - 8356207
Alignment:
Q  282 aaaacaacttttttgaatttgaaagtaactaatagggtgacggaaagnnnnnnntcccatgtaggcaggcaagcgggaaatgctgatgtggagaagtgat 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||||||||||||||||||||||    
T  8355782 aaaacaacttttttgaatttgaaagtaactaatagggtgacggaacgaaaaaaatcccatgtaggcaggcaagcgggaaatgctgatgtggagaagtgat 8355881  T
Q  382 ctatttaagtttagttgatctaccatcttataaattctataaaaataatataatccatttatcaaaagttgcacagaaaatcagaagacaatttagttct 481  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8355882 ctatttcagtttagttgatctaccatcttataaattctacaaaaataatataatccatttatcaaaagttgcacagaaaatcagaagacaatttagttct 8355981  T
Q  482 ggttgatgctaaactaattcagcaatgataattaaaatgaggcaagaataatatatttttctttacacattaacaatacacaaagtgcattcagatgttc 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8355982 ggttgatgctaaactaattcagcaatgataattaaaatgaggcaagaataatatatttttctttacacattaacaatacacaaagtgcattcagatgttc 8356081  T
Q  582 aacagtggaaaaaatgttaccttgtttaatctcaaatttatcatcatcaccctatataagttctcaacccccaacatagaagaaaacagtatactagtga 681  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8356082 aacagtggaaaaaatgtgaccttgtttaatctcaaatttatcatcatcaccctatataagttctcaacccccaacatagaagaaaacagtatactagtga 8356181  T
Q  682 acaaggctggaggacccgtacaatca 707  Q
    |||||||||||||| |||||||||||    
T  8356182 acaaggctggaggaaccgtacaatca 8356207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 39 - 286
Target Start/End: Original strand, 8355517 - 8355761
Alignment:
Q  39 tgttccagatcgccaccactagtctggaaagatagtgactttgttatgaacaacttttgggatgttcctaaatagaagagaaattatactaagatcagaa 138  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  8355517 tgttccagatcgccaccactagtctggaaagatagtgagtttgttatgaacaacttttgggatgttcctaaatagaagagaaattatactaaga---gaa 8355613  T
Q  139 taaaaactacactaagagtgtgtttggatagagaattttaatcggggaattatactatgaattggtaatcgcctttgttttggcatatatgaagaaattc 238  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8355614 taaaaactacactaaaagtgtgtttggatagagaattttaatcggggaattatactatgaattggtaatcgcctttgttttggcatatatgaagaaattc 8355713  T
Q  239 aagacattgattcaacgatttttatttagttattccagctcataaaac 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8355714 aagacattgattcaacgatttttatttagttattccagctcataaaac 8355761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 150; E-Value: 1e-78
Query Start/End: Original strand, 1349 - 1577
Target Start/End: Original strand, 8365320 - 8365549
Alignment:
Q  1349 caattcctgtaatttctagtatttttacaatgttggattagattctaggacgacgaaggca-tataaacattttcggccagtgttttgtgacataatagt 1447  Q
    ||||||||  || |||||||||||||||||||||||||||  ||||||||| ||||| ||| |||||| |||||| ||||||||||||||||||||||||    
T  8365320 caattccttcaaattctagtatttttacaatgttggattaacttctaggacaacgaaagcagtataaagattttcagccagtgttttgtgacataatagt 8365419  T
Q  1448 tatggagtgttttattttgattagccaaagtaaattataacaacgattatttaaataagcataagttcagatcatatataggtgctataaacataaacat 1547  Q
    |||||||||| |||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||  ||||||||||||||||||||||||| |||||    
T  8365420 tatggagtgtgttattttgatcagccaaagtaaattataacaacaattatttcaataagcataagtttggatcatatataggtgctataaacatcaacat 8365519  T
Q  1548 aataaaacttgtcaaagaacaatcaaagag 1577  Q
    ||||||||||  ||||||||||||||||||    
T  8365520 aataaaacttaccaaagaacaatcaaagag 8365549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 131; E-Value: 3e-67
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 8482788 - 8482621
Alignment:
Q  10 acatcatcatgagtacaaagtatttccaatgttccagatcgccaccactagtctggaaagata-gtgactttgttatgaacaacttttgggatgttccta 108  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  8482788 acatcatcataagtacaaagtatttccaatgttccagatcaccaccactagtctggaaagataagtgagtttgttatgaacaacttttgggatgttccta 8482689  T
Q  109 aatagaagagaaattatactaagatcagaataaaaactacactaagagtgtgtttggatagagaatttta 178  Q
    |||||||||||||||||||||||||||||||||||||| | |||  ||||||||||||||||||||||||    
T  8482688 aatagaagagaaattatactaagatcagaataaaaactcctcta--agtgtgtttggatagagaatttta 8482621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 124; E-Value: 5e-63
Query Start/End: Original strand, 1054 - 1249
Target Start/End: Original strand, 8351491 - 8351686
Alignment:
Q  1054 aggctgcaccataaatgctaaaaatgattcatgcgattaagtaacatatcatttccttgtagaaataagaacagatgtttcaatctttttctaatcatgt 1153  Q
    |||||||||| | ||||||||||||||||||||||||| |||||||||||||||| ||| |  |||||||||| ||  ||||||||||||||||| ||||    
T  8351491 aggctgcaccttgaatgctaaaaatgattcatgcgattcagtaacatatcatttctttgcaagaataagaacaaattcttcaatctttttctaataatgt 8351590  T
Q  1154 tccgatctaaaattcatcatgagaaatactaaaggagatgcgaaaacataaaccacgacatcagaaactacagttactgctacatgcattcattct 1249  Q
    ||| |||||||||||||||||||||||| | ||||||||||||||| ||||||||| ||||||||| | |||||||||||||||||||||||||||    
T  8351591 tcctatctaaaattcatcatgagaaatattgaaggagatgcgaaaaaataaaccactacatcagaacccacagttactgctacatgcattcattct 8351686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 111; E-Value: 3e-55
Query Start/End: Original strand, 1054 - 1255
Target Start/End: Original strand, 8412762 - 8412961
Alignment:
Q  1054 aggctgcaccataaatgctaaaaatgattcatgcgattaagtaacatatcatttccttgtagaaataagaacagatgtttcaatctttttctaatcatgt 1153  Q
    |||||||||| | ||||||||||||||||||||||||| |||||||||||||||| ||| |  |||||||||| ||| ||||||||||||||||| ||||    
T  8412762 aggctgcaccttgaatgctaaaaatgattcatgcgattcagtaacatatcatttctttgcaagaataagaacaaatgcttcaatctttttctaattatgt 8412861  T
Q  1154 tccgatctaaaattcatcatgagaaatactaaaggagatgcgaaaacataaaccacgacatcagaaactacagttactgctacatgcattcattctctaa 1253  Q
    ||  |||||||||||||||||||||||| | ||||||||||||||| |||||||||   ||||||| | |||||||||||| ||||||||||||| ||||    
T  8412862 tcgtatctaaaattcatcatgagaaatattgaaggagatgcgaaaaaataaaccac--tatcagaagccacagttactgctgcatgcattcattcactaa 8412959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 2e-50
Query Start/End: Original strand, 1289 - 1470
Target Start/End: Original strand, 8351749 - 8351935
Alignment:
Q  1289 gtggttttggtctcgtttaaaaatctagtcatcaaattattatgttctaaaaggtataac-caattcctgtaatttctagtatttttacaatgttggatt 1387  Q
    |||||| |||||||||||||||||||||||||| |||||| ||||||||||  ||||||| |||||||||||||||||| ||||||||||||||||||||    
T  8351749 gtggttgtggtctcgtttaaaaatctagtcatcgaattatcatgttctaaa--gtataactcaattcctgtaatttctattatttttacaatgttggatt 8351846  T
Q  1388 agattctaggacgacgaaggca------tataaacattttcggccagtgttttgtgacataatagttatggagtgttttattttgatta 1470  Q
    ||||| || |||||| ||||||      ||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||    
T  8351847 agattatatgacgacaaaggcagtgcagtataaacattttttaccagtgttttgtgacataatagttatggagtgtgttattttgatta 8351935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 9e-40
Query Start/End: Original strand, 679 - 830
Target Start/End: Original strand, 8433167 - 8433316
Alignment:
Q  679 tgaacaaggctggaggacccgtacaatcagctcaacagctataagtaatgtaacagtgaatgatgttatacgttggttttataacaaaactcactcacta 778  Q
    ||||||| |||||||||||| |||||||| |||||||||||  || ||||||||| |||||||    |||||||||||||||||||||||||||||||||    
T  8433167 tgaacaaagctggaggacccttacaatcaactcaacagcta--agcaatgtaacaatgaatgaaaccatacgttggttttataacaaaactcactcacta 8433264  T
Q  779 tatttcacaaagttcctatgtgggacttgttttttgttttcaaattgtcact 830  Q
    ||||||||||||||   ||||||||||| |||| ||||||||||||||||||    
T  8433265 tatttcacaaagttttgatgtgggacttcttttatgttttcaaattgtcact 8433316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 1574 - 1652
Target Start/End: Original strand, 8357806 - 8357884
Alignment:
Q  1574 agagactccatgacaaatttaaaacaaagtggtattcccttctttctatactctcaaatttgtcgaatgaaactcaact 1652  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8357806 agagactccatgacaaatttaaaacaaagtggtattcccttctttctatactctcaaatttgtcgaatgaaactcaact 8357884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 1469 - 1577
Target Start/End: Original strand, 8351999 - 8352107
Alignment:
Q  1469 tagccaaagtaaattataacaacgattatttaaataagcataagttcagatcatatataggtgctataaacataaacataataaaacttgtcaaagaaca 1568  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||   |||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  8351999 tagccaaagtaaattattacaacgattatttcaataagcataagtttgaatcatatataggtgctataaacatgaacataataaaacttaccaaagaaca 8352098  T
Q  1569 atcaaagag 1577  Q
    | |||||||    
T  8352099 accaaagag 8352107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 1e-26
Query Start/End: Original strand, 1289 - 1366
Target Start/End: Original strand, 8413019 - 8413097
Alignment:
Q  1289 gtggttttggtctcgtttaaaaatctagtcatcaaattattatgttctaaaaggtataac-caattcctgtaatttcta 1366  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8413019 gtggttgtggtctcatttaaaaatctagtcatcaaattattatgttctaaaaggtataactcaattcctgtaatttcta 8413097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 1123 - 1254
Target Start/End: Original strand, 8365084 - 8365211
Alignment:
Q  1123 aacagatgtttcaatctttttctaatcatgttccgatctaaaattcatcatgagaaatactaaaggagatgcgaaaacataaaccacgacatcagaaact 1222  Q
    |||| ||| ||||||||| ||||||||||| ||| ||||||||| | |||||||||||||  ||||||||| ||||| |||||| || |||||||||||     
T  8365084 aacaaatgcttcaatcttcttctaatcatgatccaatctaaaatccgtcatgagaaataccgaaggagatgagaaaaaataaacaacaacatcagaaacc 8365183  T
Q  1223 acagttactgctacatgcattcattctctaaa 1254  Q
    |    |||||||||||||||||||||||||||    
T  8365184 a----tactgctacatgcattcattctctaaa 8365211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 7e-22
Query Start/End: Original strand, 1158 - 1248
Target Start/End: Complemental strand, 8427586 - 8427496
Alignment:
Q  1158 atctaaaattcatcatgagaaatactaaaggagatgcgaaaacataaaccacgacatcagaaactacagttactgctacatgcattcattc 1248  Q
    ||||| ||| |||||||||||||||| ||||||||| ||||| ||||||||| ||||||||||| ||||||||| || |||||||||||||    
T  8427586 atctataatccatcatgagaaatactgaaggagatgagaaaaaataaaccactacatcagaaaccacagttactactgcatgcattcattc 8427496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 1574 - 1637
Target Start/End: Original strand, 8366210 - 8366272
Alignment:
Q  1574 agagactccatgacaaatttaaaacaaagtggtattcccttctttctatactctcaaatttgtc 1637  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  8366210 agagactccatgacaaatttagaacaatgtggtattccctt-tttctatactctcaaatttgtc 8366272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 771 - 824
Target Start/End: Original strand, 8362239 - 8362292
Alignment:
Q  771 actcactatatttcacaaagttcctatgtgggacttgttttttgttttcaaatt 824  Q
    ||||||||||||||| |||||||| |||||||||| ||||||||||||||||||    
T  8362239 actcactatatttcaaaaagttccgatgtgggactagttttttgttttcaaatt 8362292  T

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Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 1001 - 1122
Target Start/End: Original strand, 8364866 - 8364984
Alignment:
Q  1001 ggtaatcataaacatctgaaataatgcaaagcacaaattctttcagcttcacaaggctgcaccataaatgctaaaaatgattcatgcgattaagtaacat 1100  Q
    ||||||||||||||| | |||| |||||| ||||||||| ||||| | ||||||||||||||   || ||||||||||||||||||| |||||||||  |    
T  8364866 ggtaatcataaacattttaaatgatgcaa-gcacaaattttttcaacatcacaaggctgcactggaa-tgctaaaaatgattcatgccattaagtaaagt 8364963  T
Q  1101 atcatttccttgtagaaataag 1122  Q
    | |||||||||| || ||||||    
T  8364964 a-catttccttgcaggaataag 8364984  T

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Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1583 - 1635
Target Start/End: Original strand, 8353211 - 8353263
Alignment:
Q  1583 atgacaaatttaaaacaaagtggtattcccttctttctatactctcaaatttg 1635  Q
    |||||||||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  8353211 atgacaaatttaaaactaagtggtattcccttctttttatcctctcaaatttg 8353263  T

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Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 1289 - 1399
Target Start/End: Original strand, 8531730 - 8531847
Alignment:
Q  1289 gtggttttggtctcgtttaaaaatctagtcatcaaattattatgttctaaa------aggtataac-caattcctgtaatttctagtatttttacaatgt 1381  Q
    |||||||||||||| ||| |||||| ||||||| | |||| ||| ||||||      || |||||| ||||||||   ||||||||||||||| ||||||    
T  8531730 gtggttttggtctcttttgaaaatcaagtcatccagttataatgctctaaattttgaagatataactcaattcctaagatttctagtatttttccaatgt 8531829  T
Q  1382 tggattagattctaggac 1399  Q
    ||||||||||||||||||    
T  8531830 tggattagattctaggac 8531847  T

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Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 749 - 810
Target Start/End: Original strand, 8419317 - 8419380
Alignment:
Q  749 cgttggttttataacaaaactcactc--actatatttcacaaagttcctatgtgggacttgttt 810  Q
    ||||||||||||||||||||| ||||  ||||||||| |||||||||| ||||||| |||||||    
T  8419317 cgttggttttataacaaaacttactctcactatattttacaaagttccgatgtggggcttgttt 8419380  T

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Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 773 - 824
Target Start/End: Original strand, 8406351 - 8406402
Alignment:
Q  773 tcactatatttcacaaagttcctatgtgggacttgttttttgttttcaaatt 824  Q
    ||||||||||||| |||||||| ||||||||||| ||||||||||| |||||    
T  8406351 tcactatatttcataaagttccaatgtgggacttattttttgttttgaaatt 8406402  T

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Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 1185 - 1247
Target Start/End: Original strand, 8531503 - 8531565
Alignment:
Q  1185 aaggagatgcgaaaacataaaccacgacatcagaaactacagttactgctacatgcattcatt 1247  Q
    ||||||||| ||||| ||||||||| ||||| || || |||||||| ||||||||||||||||    
T  8531503 aaggagatgagaaaaaataaaccactacatcggataccacagttacggctacatgcattcatt 8531565  T

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Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 37485994 - 37486059
Alignment:
Q  81 gttatgaacaacttttgggatgttcctaaatagaagagaaattatactaagatcagaataaaaactaca 149  Q
    ||||||||||||||||||| ||||| ||||| ||||||||| ||| |||||   |||||||||||||||    
T  37485994 gttatgaacaacttttgggttgttcataaatggaagagaaactatgctaag---agaataaaaactaca 37486059  T

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Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 752 - 810
Target Start/End: Original strand, 8342901 - 8342961
Alignment:
Q  752 tggttttataacaaaactcactc--actatatttcacaaagttcctatgtgggacttgttt 810  Q
    |||||||||| ||||||| ||||  |||| ||||||||||||||| |||||||||||||||    
T  8342901 tggttttatagcaaaacttactctcactaaatttcacaaagttccgatgtgggacttgttt 8342961  T

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Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 771 - 824
Target Start/End: Original strand, 8415718 - 8415771
Alignment:
Q  771 actcactatatttcacaaagttcctatgtgggacttgttttttgttttcaaatt 824  Q
    ||||||||||||||| |||||||| ||||||| ||| ||||||||||| |||||    
T  8415718 actcactatatttcataaagttccgatgtggggcttattttttgttttgaaatt 8415771  T

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Target: chr4 (Bit Score: 59; Significance: 3e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-24
Query Start/End: Original strand, 1329 - 1466
Target Start/End: Complemental strand, 7287306 - 7287171
Alignment:
Q  1329 tatgttctaaaaggtataac-caattcctgtaatttctagtatttttacaatgttggattagattctaggacgacgaaggca-tataaacattttcggcc 1426  Q
    |||||||||||| ||||||| |||||||| | ||||||| |||||||||||| |||||||||||||||||| |||  ||||| ||||||||||||||| |    
T  7287306 tatgttctaaaaagtataactcaattcctttgatttctactatttttacaatcttggattagattctaggaggacagaggcagtataaacattttcggac 7287207  T
Q  1427 agtgttttgtgacataatagttatggagtgttttattttg 1466  Q
    | |||    |||||||||| ||||||||||| ||||||||    
T  7287206 aatgt----tgacataataattatggagtgtgttattttg 7287171  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 1471 - 1546
Target Start/End: Complemental strand, 7287122 - 7287047
Alignment:
Q  1471 gccaaagtaaattataacaacgattatttaaataagcataagttcagatcatatataggtgctataaacataaaca 1546  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||    
T  7287122 gccaatgtaaattattacaacgattatttcaataagcataagttcagatcatatataggtgttataaacatcaaca 7287047  T

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Target: scaffold0141 (Bit Score: 52; Significance: 5e-20; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 52; E-Value: 5e-20
Query Start/End: Original strand, 1029 - 1108
Target Start/End: Original strand, 8943 - 9022
Alignment:
Q  1029 aagcacaaattctttcagcttcacaaggctgcaccataaatgctaaaaatgattcatgcgattaagtaacatatcatttc 1108  Q
    ||||||||||| ||| ||| ||||||||||||||| | ||||||||||||||||||||| |||||||||| |||||||||    
T  8943 aagcacaaattgttttagcatcacaaggctgcaccttgaatgctaaaaatgattcatgccattaagtaacgtatcatttc 9022  T

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