View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3770_high_2 (Length: 580)
Name: NF3770_high_2
Description: NF3770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3770_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 162 - 575
Target Start/End: Original strand, 11370982 - 11371397
Alignment:
| Q |
162 |
tttggtggattattgtaaactttggtgtgatgttaatttgatttaagtttgtaatatgcagttgagccttgtatatggtccaccatgctgtgccattggg |
261 |
Q |
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| T |
11370982 |
tttggtggattattgtaaactttggtgtgatgttaatttgatttaagtttgtaatatgcagttgatacttgtatatggtccaccatactgtgccactgat |
11371081 |
T |
|
| Q |
262 |
-cttgtataaggttcacgattgggcttttgaagaaaaccacaccgaactggttctgaactaaatcagaagacagatcatgaaaattgaactattttactc |
360 |
Q |
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|||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
11371082 |
acttgtatatggttcacggttgggattttgaagaaaaccacaccgaactggttctgaactaaatcagaagacagatcacgaaaattgaactattttactc |
11371181 |
T |
|
| Q |
361 |
ggtataatttgatttgaacttggtgcactgtggtcatacttatagaagctatgatttttagcttcatgtataatcaaatttta-ggacaaaatcagttat |
459 |
Q |
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| T |
11371182 |
ggtataatttgatctgaacttggtgcactgtggtcagacttatagaagctatgatttttagcttcatgtataatcaaattctagggacaaaatcagttat |
11371281 |
T |
|
| Q |
460 |
gatactctttttatatgaatcaaacatgtcaaaattagtcctacacttctaaaattaatattgccatcatccaaaagtaaaacatatacttagttctacg |
559 |
Q |
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| T |
11371282 |
gatactctttttatatgaatcaaacatgtcaaaattagtcctacacttctaaaattaatattgccatcatccaaaagtaaaacatatacttagttctacg |
11371381 |
T |
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| Q |
560 |
cttgccctatgcttct |
575 |
Q |
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| T |
11371382 |
cttgctctatgcttct |
11371397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 215 - 575
Target Start/End: Complemental strand, 11356358 - 11355997
Alignment:
| Q |
215 |
atatgcagttgagccttgtatatggtccaccatgctgtgccattgggcttgtataaggttcacgattgggcttttgaagaaaaccacaccgaactggttc |
314 |
Q |
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| T |
11356358 |
atatgcagttgatacttgtatatggtccaccatgctgtgccactgggcttttatatggttcacggttgggcttttgaagaaaaccacaccgaactggttc |
11356259 |
T |
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| Q |
315 |
tgaactaaatcagaagacagatcatgaaaattgaactattttactcggtataatttgatttgaacttggtgcactgtggtcatacttatagaagctatga |
414 |
Q |
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| T |
11356258 |
tgaactaaatcagaagacagatcacgaaaattgaactattttactcggtataatttgatctgaacttggtgcactgtggtcagacttatagaagctatga |
11356159 |
T |
|
| Q |
415 |
tttttagcttcatgtataatcaaatttta-ggacaaaatcagttatgatactctttttatatgaatcaaacatgtcaaaattagtcctacacttctaaaa |
513 |
Q |
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| T |
11356158 |
tttttagcttcatgtataatcaaattctagggacaaaatcagttatgatactctttttatatgaatcaaacatgtcaaaattagtcctacacttctaaaa |
11356059 |
T |
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| Q |
514 |
ttaatattgccatcatccaaaagtaaaacatatacttagttctacgcttgccctatgcttct |
575 |
Q |
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| T |
11356058 |
ttaatattgccatcatccaaaagtaaaacatatacttagttctacgcttgctctatgcttct |
11355997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 11370755 - 11370897
Alignment:
| Q |
18 |
tgttttccaaaatttattattgcttttttgatcattttatttgtgtttgcagtcatctcagcaggttattagtttcacagatgaggaaaggcatgcaata |
117 |
Q |
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| T |
11370755 |
tgttttccaaaatttattattgcttttttgatcattttatttgtgcttgcagtcatctcagcaggttattagtttcacagatgaggaaaggcatgcaata |
11370854 |
T |
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| Q |
118 |
caatttatattggatcaactcagaaatatatctgagtagaaaa |
160 |
Q |
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| T |
11370855 |
caatttatattggatcaactcagaaatatatctgagtagaaaa |
11370897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 518
Target Start/End: Complemental strand, 36529472 - 36529431
Alignment:
| Q |
477 |
aatcaaacatgtcaaaattagtcctacacttctaaaattaat |
518 |
Q |
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| T |
36529472 |
aatcaaacatgtcaaaattaattctacatttctaaaattaat |
36529431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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