View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3770_high_3 (Length: 576)
Name: NF3770_high_3
Description: NF3770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3770_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Complemental strand, 8418800 - 8418244
Alignment:
| Q |
1 |
attaattctaagtcttcataatccctttttggctctcctaaaatgaatctaaacctagactttgattcagacatggtgcatgtacaaaagtgattttatg |
100 |
Q |
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| T |
8418800 |
attaattctaagtcttcataatccctttttggctctcctaaaatgaatctaaacctagactttgattcacacatggtgcatgtacaaaagtgattttatg |
8418701 |
T |
|
| Q |
101 |
agcgtaaaattgattttaaaatgtttaaatgttctttgctataatagtttttgttttcaaaatgctcttaaatttatttttcaatttac-atatatacgt |
199 |
Q |
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| T |
8418700 |
tgcgtaaaattgagtttaaaatgtttaaatgttctatgctataatagtttttgttttcaaaatgctctaaaatttatttttcaacttactacttataggt |
8418601 |
T |
|
| Q |
200 |
gattatattaaaacataaataattgtatattcaacttataaaaccaagcacacgcttactagtttcatatattttacatttgatcaaacttaagctttct |
299 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8418600 |
gattattttaaaacataaataattgtatattcagcttataaaaccaagcacacgcttactagtttcatatattttacatttgatcaaacataagctttct |
8418501 |
T |
|
| Q |
300 |
cttcatacttttctgctttaagcttatgcagcttcttgatcaaactattcttttcttgaaaccaaagaagttgcaaacacttctattagtgtgtgagaaa |
399 |
Q |
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| T |
8418500 |
cttcatacttttctgctttaagcttatgcaacttcttgatcaaactattcctttcttgaaaccaaagaagttgcaaacacttctactaatgtgtgagaaa |
8418401 |
T |
|
| Q |
400 |
gtgagacaaccttaactatgtgaacttccacattttgaattcttaactataatttggttgattaagaatcgaatattgagttacttgtgaatagctactt |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8418400 |
gtgagacaaccttaactatgtgaacttccacattttgaattcttaactataatttggttgattaagaatcgaatattggattacttgtgaatagctactt |
8418301 |
T |
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| Q |
500 |
atagctttagctacctattggattaacactaagcagaacaatttcattagtgaaact |
556 |
Q |
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| T |
8418300 |
atagctttagctacctattggattaacactaagcagaacaatttcattagtgaaact |
8418244 |
T |
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