View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3770_high_5 (Length: 565)
Name: NF3770_high_5
Description: NF3770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3770_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 2457919 - 2458157
Alignment:
| Q |
13 |
gagacttgagtggcacagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggcca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2457919 |
gagacttgagtggcacagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggcca |
2458018 |
T |
|
| Q |
113 |
ttacactcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatccacca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2458019 |
ttacactcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatccacca |
2458118 |
T |
|
| Q |
213 |
ggcaactatgttggtcaaaagccatactaagtgcatcat |
251 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
2458119 |
ggcaactatgttggtcaaaagccatactaagtgcatcat |
2458157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 3063496 - 3063274
Alignment:
| Q |
19 |
tgagtggcacagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggccattacac |
118 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3063496 |
tgagtggctcagatgcagtgaagttgtgggtgaatgagaaagctgactataattataatagtaacacatgtgcttctggtaaagtgtgtggccattatac |
3063397 |
T |
|
| Q |
119 |
tcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatg---taataatggaggcacattcattatttgcaattacgatccaccaggc |
215 |
Q |
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| T |
3063396 |
tcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggc |
3063297 |
T |
|
| Q |
216 |
aactatgttggtcaaaagccata |
238 |
Q |
| |
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|||||||||||| |||||||||| |
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| T |
3063296 |
aactatgttggtgaaaagccata |
3063274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 2462501 - 2462730
Alignment:
| Q |
19 |
tgagtggcacagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggccattacac |
118 |
Q |
| |
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|||||||| |||||||||||| ||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2462501 |
tgagtggctcagatgcagtgaagttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggccattatac |
2462600 |
T |
|
| Q |
119 |
tcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatg---taataatggaggcacattcattatttgcaattacgatccaccaggc |
215 |
Q |
| |
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|||||||||||||||||| || | ||| |||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||| ||||||||| |
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| T |
2462601 |
ccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggc |
2462700 |
T |
|
| Q |
216 |
aactatgttggtcaaaagccatactaagtg |
245 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |
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| T |
2462701 |
aactatgttggtgaaaagccatactaagtg |
2462730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 2466543 - 2466775
Alignment:
| Q |
13 |
gagacttgagtggcacagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggcca |
112 |
Q |
| |
|
||||||| |||||| |||||||||||| ||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466543 |
gagacttaagtggctcagatgcagtgaagttgtgggtgaatgagaaagctgactatgattataatagtaacacatgtgcttctggtaaagtgtgtggcca |
2466642 |
T |
|
| Q |
113 |
ttacactcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatg---taataatggaggcacattcattatttgcaattacgatcca |
209 |
Q |
| |
|
||| || |||||||||||||||||| || | ||| |||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||| ||| |
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| T |
2466643 |
ttatacccaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgaccca |
2466742 |
T |
|
| Q |
210 |
ccaggcaactatgttggtcaaaagccatactaagtg |
245 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| |
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| T |
2466743 |
ccaggcaact---ttggtgaaaagccatactaagtg |
2466775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 426 - 548
Target Start/End: Original strand, 2458332 - 2458454
Alignment:
| Q |
426 |
tagacgcacacatataactttcaaactaattaatgccatctgttttaaaaattgtggtatttattatttttgtctaaagaggaattctgatggctccact |
525 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2458332 |
tagacacacacatataacttccaaactaattaatgtcatctattttaaaaattatggtatttattttttttgtctaaagaggaattctgatggctccact |
2458431 |
T |
|
| Q |
526 |
ttgtgttacacaacacgattagt |
548 |
Q |
| |
|
|||| |||||||||||||||||| |
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| T |
2458432 |
ttgtattacacaacacgattagt |
2458454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 2469874 - 2470100
Alignment:
| Q |
19 |
tgagtggcacagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggccattacac |
118 |
Q |
| |
|
|||||||| ||| || |||| |||||||||| |||| ||| | ||||| | |||| |||||| |||||||| |||| || |||||||||| ||||| |
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| T |
2469874 |
tgagtggcgtagaagcggtgaagttgtgggtggatgaaaaaccctactatgattatagtagtaattcatgtgctaatggtgaaatgtgtggccactacac |
2469973 |
T |
|
| Q |
119 |
tcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatccaccaggcaac |
218 |
Q |
| |
|
|||||| ||||||||||||||| | || ||||||||||||||||| | ||||||||| ||||| |||||||||| |||||||||||| |||||||||||| |
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|
| T |
2469974 |
tcaggtggtttggagaaacacacaacggattggatgtgccaaagtgaaatgtaataacggaggaacattcattacttgcaattacgacccaccaggcaac |
2470073 |
T |
|
| Q |
219 |
tatgttggtcaaaagccatactaagtg |
245 |
Q |
| |
|
||| |||| ||| |||||||||||| |
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| T |
2470074 |
tatattggcgaaagaccatactaagtg |
2470100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 2474236 - 2474352
Alignment:
| Q |
110 |
ccattacactcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatcca |
209 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| |||||||||||||||||||| | |||| |||||||||| |||||||||| |||||||||||| || |
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|
| T |
2474236 |
ccattatactcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtgataatggaggaacattcattacttgcaattacgacccc |
2474335 |
T |
|
| Q |
210 |
ccaggcaactatgttgg |
226 |
Q |
| |
|
|| ||||||||| |||| |
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|
| T |
2474336 |
cctggcaactatattgg |
2474352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 310 - 365
Target Start/End: Original strand, 2458214 - 2458269
Alignment:
| Q |
310 |
ccaggaaaaatgagttcccgactcattacgatcatgatgatatatacttctcaaat |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2458214 |
ccaggaaaaatgagttcccgactcattacgatcatgatgatatatacttctcaaat |
2458269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 2471027 - 2471090
Alignment:
| Q |
148 |
ttggatgtgccaaagtaagatgtaataatggaggcacattcattatttgcaattacgatccacc |
211 |
Q |
| |
|
||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||| || ||||| |
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|
| T |
2471027 |
ttggatgtggcaaagtgagatgtgataatggaggcacattcattacttgcaattatgacccacc |
2471090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 18015824 - 18016046
Alignment:
| Q |
19 |
tgagtggcacagatgcagtgaggttgtgggtgaatgagaaaaacgactataactataatagtaacacatgtgcttctggtaaagtgtgtggccattacac |
118 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
18015824 |
tgagtggctcagatgcagtgaagttgtgggtgaatgagaaagctgactataattataatagtaacacatgtgcttctggtaaagtgtgtggccattatac |
18015923 |
T |
|
| Q |
119 |
tcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatg---taataatggaggcacattcattatttgcaattacgatccaccaggc |
215 |
Q |
| |
|
||||||||||||||||||| || | ||| |||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||| ||||||||| |
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| T |
18015924 |
tcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggc |
18016023 |
T |
|
| Q |
216 |
aactatgttggtcaaaagccata |
238 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
18016024 |
aactatgttggtgaaaagccata |
18016046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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