View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3770_low_10 (Length: 419)
Name: NF3770_low_10
Description: NF3770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3770_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 208 - 408
Target Start/End: Complemental strand, 14332297 - 14332097
Alignment:
| Q |
208 |
tacttatcaatgatataggactacgagtactcgagttacaatcctgttgcatatgaccttgcaaatcatttctgtgaaatggccgcaaattaccacactg |
307 |
Q |
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| T |
14332297 |
tacttatcaatgatataggactacgagtactcgagttacaatcctgttgcgtatgaccttgcaaatcatttctgtgaaatggccgcaaattaccacactg |
14332198 |
T |
|
| Q |
308 |
acacgcctcatgttcttgactacagtaaatatcctggtaaatgaattgctcatacattttacggctttctattttcaataaattttttgagatcattctg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14332197 |
acacgcctcatgttcttgactacagtaaatatcctggtaaatgaattgctcatacattttacggctttctattttcaataatttttttgagatcattctg |
14332098 |
T |
|
| Q |
408 |
t |
408 |
Q |
| |
|
| |
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|
| T |
14332097 |
t |
14332097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 208 - 408
Target Start/End: Complemental strand, 14425307 - 14425107
Alignment:
| Q |
208 |
tacttatcaatgatataggactacgagtactcgagttacaatcctgttgcatatgaccttgcaaatcatttctgtgaaatggccgcaaattaccacactg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14425307 |
tacttatcaatgatataggactacgagtactcgagttacaatcctgttgcgtatgaccttgcaaatcatttctgtgaaatggccgcaaattaccacactg |
14425208 |
T |
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| Q |
308 |
acacgcctcatgttcttgactacagtaaatatcctggtaaatgaattgctcatacattttacggctttctattttcaataaattttttgagatcattctg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14425207 |
acacgcctcatgttcttgactacagtaaatatcctggtaaatgaattgctcatacattttacggctttctattttcaataatttttttgagatcattctg |
14425108 |
T |
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| Q |
408 |
t |
408 |
Q |
| |
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| |
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| T |
14425107 |
t |
14425107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 14332487 - 14332362
Alignment:
| Q |
18 |
attaatcactctaaattgtgcttatataatatgtttataccgtttaacttttatactccatagtcaaaattaatcttgtaggtgccattatagtttatac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14332487 |
attaatcactctaaattgtgcttatataatatgtttataccgtttaacttttataatccatagtcaaaattaatcttgtaggtgccattatagtttatac |
14332388 |
T |
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| Q |
118 |
catcactaatgtaccatcactttcta |
143 |
Q |
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|||||||||||||||||||||||||| |
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| T |
14332387 |
catcactaatgtaccatcactttcta |
14332362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 14425497 - 14425372
Alignment:
| Q |
18 |
attaatcactctaaattgtgcttatataatatgtttataccgtttaacttttatactccatagtcaaaattaatcttgtaggtgccattatagtttatac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14425497 |
attaatcactctaaattgtgcttatataatatgtttataccgtttaacttttataatccatagtcaaaattaatcttgtaggtgccattatagtttatac |
14425398 |
T |
|
| Q |
118 |
catcactaatgtaccatcactttcta |
143 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
14425397 |
catcactaatgtaccatcactttcta |
14425372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 218 - 349
Target Start/End: Complemental strand, 44103308 - 44103177
Alignment:
| Q |
218 |
tgatataggactacgagtactcgagttacaatcctgttgcatatgaccttgcaaatcatttctgtgaaatggccgcaaattaccacactgacacgcctca |
317 |
Q |
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|
|||||||||||||||| ||| |||||||||||||| | || |||||||| || |||||||||||||||||||| ||| ||||||| | ||| || ||||| |
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| T |
44103308 |
tgatataggactacgaatacgcgagttacaatcctatcgcgtatgacctggctaatcatttctgtgaaatggcagcagattaccatagtgatacacctca |
44103209 |
T |
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| Q |
318 |
tgttcttgactacagtaaatatcctggtaaat |
349 |
Q |
| |
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| |||||||||||||||||||||||||||||| |
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| T |
44103208 |
ttttcttgactacagtaaatatcctggtaaat |
44103177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 346
Target Start/End: Original strand, 3600618 - 3600719
Alignment:
| Q |
245 |
acaatcctgttgcatatgaccttgcaaatcatttctgtgaaatggccgcaaattaccacactgacacgcctcatgttcttgactacagtaaatatcctgg |
344 |
Q |
| |
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|||||||||| || ||||| | ||||| || |||||||| ||||| ||||| ||||| || || ||||||||| ||||||| || || ||||||||||| |
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| T |
3600618 |
acaatcctgtagcgtatgatatagcaaaccacttctgtgagatggctgcaaactaccatacagaaacgcctcatattcttgattatagcaaatatcctgg |
3600717 |
T |
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| Q |
345 |
ta |
346 |
Q |
| |
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|| |
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| T |
3600718 |
ta |
3600719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 15545883 - 15545778
Alignment:
| Q |
241 |
agttacaatcctgttgcatatgaccttgcaaatcatttctgtgaaatggccgcaaattaccacactgacacgcctcatgttcttgactacagtaaatatc |
340 |
Q |
| |
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||||| ||||| ||||||||||| | ||||| || |||| ||||||||| |||||||| || || || || || ||| |||| ||||| |||||||||| |
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| T |
15545883 |
agttataatccagttgcatatgatatagcaaaccacttctctgaaatggctgcaaattatcataccgaaactccacatattctcgactatagtaaatatc |
15545784 |
T |
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| Q |
341 |
ctggta |
346 |
Q |
| |
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| |||| |
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| T |
15545783 |
ccggta |
15545778 |
T |
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