View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3770_low_11 (Length: 406)
Name: NF3770_low_11
Description: NF3770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3770_low_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 2507371 - 2507542
Alignment:
| Q |
11 |
caaaggtcacgactcactacaacccaaacaaattagaggttgagtacaacactattgattcaaattatagggaataccttaaaccttcagtaaacactaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2507371 |
caaaggtcacgactcactacaacccaaacaaattagaggttgagtacaacactattgattcaaattatagggaataccttaaaccttcagtaaacactaa |
2507470 |
T |
|
| Q |
111 |
gacaacactttaaacttttttctaataggtgagaatcattaaactcttcttgttggaaattaataatatttc |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2507471 |
gacaacactttaaacttttttctaataggtgagaatcattaaactcttcttgttggaaattaataatatttc |
2507542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 242 - 386
Target Start/End: Original strand, 2507602 - 2507746
Alignment:
| Q |
242 |
ggagtgtgtttatctctaggttttatgtttgaatttctcaaataccaataatacatgtgttggatcggtatacatagagctttgttctcacttcaattga |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2507602 |
ggagtgtgtttatctctaggttttatgtttgaatttctcaaataccaataatacatgtgttggatcggtatacatagagctttgttctcacttcaattga |
2507701 |
T |
|
| Q |
342 |
gttcatgttagtggatgatgaaaatgatctacaggattagtcgct |
386 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
2507702 |
gttcatgttagtggatggtgaaattgatctacaggattagtcgct |
2507746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 11 - 182
Target Start/End: Complemental strand, 27138259 - 27138088
Alignment:
| Q |
11 |
caaaggtcacgactcactacaacccaaacaaattagaggttgagtacaacactattgattcaaattatagggaataccttaaaccttcagtaaacactaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27138259 |
caaaggtcacgactcactacaacccaaacaaattagaggttgagtacaacactattgattcaaattatagggaataccttaaaccttcagtaaacactaa |
27138160 |
T |
|
| Q |
111 |
gacaacactttaaacttttttctaataggtgagaatcattaaactcttcttgttggaaattaataatatttc |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27138159 |
gacaacactttaaacttttttctaataggtgagaatcattaaactcttcttgttggaaattaataatatttc |
27138088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 242 - 386
Target Start/End: Complemental strand, 27138028 - 27137884
Alignment:
| Q |
242 |
ggagtgtgtttatctctaggttttatgtttgaatttctcaaataccaataatacatgtgttggatcggtatacatagagctttgttctcacttcaattga |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27138028 |
ggagtgtgtttatctctaggttttatgtttgaatttctcaaataccaataatacatgtgttggatcggtatacatagagctttgttctcacttcaattga |
27137929 |
T |
|
| Q |
342 |
gttcatgttagtggatgatgaaaatgatctacaggattagtcgct |
386 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
27137928 |
gttcatgttagtggatggtgaaattgatctacaggattagtcgct |
27137884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University