View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3770_low_12 (Length: 312)
Name: NF3770_low_12
Description: NF3770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3770_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 86 - 304
Target Start/End: Original strand, 1390738 - 1390956
Alignment:
| Q |
86 |
aaaggaaatgtctccagtgtttcttccgtgtttgctttcggattttgaaatgcaaatagatggataagagttaattaatgaaatggtacttttattcatt |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1390738 |
aaaggaaatgtctccagtgtttcttccgtgtttgctttcggattttgaaatgcaaatagatggataagagttaattaatgaaatggtacttttattcatt |
1390837 |
T |
|
| Q |
186 |
ctcaaattagtattctctattctttttatatcgtaaatttgattgtttcttaatcttaactgtggagcaagtagtctatgaggttatgtaatcttaaagt |
285 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1390838 |
ctcaaattagtattatctattctttttatatcgtaaatttgtttgtttcttaatcttaactgtggagcaagtagtctatgaggttatgtaatcttaaagt |
1390937 |
T |
|
| Q |
286 |
gctaaactgcacctatgct |
304 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1390938 |
gctaaactgcacctatgct |
1390956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 214
Target Start/End: Original strand, 1374478 - 1374572
Alignment:
| Q |
120 |
ctttcggattttgaaatgcaaatagatggataagagttaattaatgaaatggtacttttattcattctcaaattagtattctctattctttttat |
214 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||| || |||||||||| |||| |||| |||||||||||| |||| |||||| ||||||| |
|
|
| T |
1374478 |
ctttcggattttaaaatgcaaatggatggataagagttgataaatgaaatggcacttctattgattctcaaattaatattatctattgtttttat |
1374572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 1358869 - 1358946
Alignment:
| Q |
119 |
gctttcggattttgaaatgcaaatagatggataagagttaattaatgaaatggtacttttattcattctcaaattagta |
197 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1358869 |
gctttcggatttc-aaatgcaaatgtatggataagagttaataaatgaaatggtacttttattcattctgaaattagta |
1358946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 1350995 - 1351072
Alignment:
| Q |
119 |
gctttcggattttgaaatgcaaatagatggataagagttaattaatgaaatggtacttttattcattctcaaattagta |
197 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||| |||||| |
|
|
| T |
1350995 |
gctttcggatttcaaaatgcaaatgtatggataagagttaataaatgaaatggtaccttt-ttcattctcaagttagta |
1351072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University