View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3770_low_15 (Length: 239)
Name: NF3770_low_15
Description: NF3770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3770_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 5375271 - 5375047
Alignment:
| Q |
1 |
actgaggattcactaacatttcctgcataaacaactggaagcaatgaatcagatgaaggttttccattgtaaagtgatgcaccagtgtaagtttttccat |
100 |
Q |
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| T |
5375271 |
actgaggattcactaacatttcctgcataaacaactggaagcaatgaatcagatgaaggttttccattgtaaagtgatgcaccagtgtaagtttttccat |
5375172 |
T |
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| Q |
101 |
ttccaagtgttatataactaggaaaatcgcggtcaattgttccggcgccaacagttgttatccatggtgctacatttgacaagctttcagcacttggtcc |
200 |
Q |
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| T |
5375171 |
ttccaagtgttatataactaggaaaatcgcggtcaattgttccggcaccaacagttgttatccatggtgctacatttgacaagctttcagcacttggtcc |
5375072 |
T |
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| Q |
201 |
accatttcctgctgaagatgaaact |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
5375071 |
accatttcctgctgaagatgaaact |
5375047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 216
Target Start/End: Original strand, 47367399 - 47367518
Alignment:
| Q |
97 |
ccatttccaagtgttatataactaggaaaatcgcggtcaattgttccggcgccaacagttgttatccatggtgctacatttgacaagctttcagcacttg |
196 |
Q |
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||||||||||| || ||||| ||| ||||||||||| || |||||||| || ||||| |||||||||||||| ||||| | ||| ||| | ||| | |
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| T |
47367399 |
ccatttccaagggtaatataggcagggaaatcgcggtctatagttccggcaccgacagtggttatccatggtgcaacattagccaaacttgctttactag |
47367498 |
T |
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| Q |
197 |
gtccaccatttcctgctgaa |
216 |
Q |
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| T |
47367499 |
gtccaccgtttcctgctgaa |
47367518 |
T |
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