View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3770_low_17 (Length: 211)
Name: NF3770_low_17
Description: NF3770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3770_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 10266516 - 10266711
Alignment:
| Q |
1 |
gaacattctcagcatcctttgttagactctcaaattcttctatcaccttttccaagtcaaacttttcaattatttccttcatcttcacacctccttcaac |
100 |
Q |
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| T |
10266516 |
gaacattctcagcatcctgtgttagactctcaaattcttctatcaccttttccaagtcaaacttttcaattatttccttcatcttcacacctccttcaac |
10266615 |
T |
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| Q |
101 |
catataaagtcaatcaatgagtgagttttttcagtttgaaggacatacagatatggcaccgacacatcaaccaacacatgttagcatcagtgtcag |
196 |
Q |
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| T |
10266616 |
catataaagtcaatcaatgagtgagttttttcagtttgaaggacatacagatatggcaccgacacatcaaccaacacatgttagcatcagtgtcag |
10266711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 10244547 - 10244644
Alignment:
| Q |
1 |
gaacattctcagcatcctttgttagactctcaaattcttctatcaccttttccaagtcaaacttttcaattatttccttcatcttcacacctccttca |
98 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||| || ||||||||||||||||||||||||||||||||| |
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| T |
10244547 |
gaacattctcagcatcctttgttagcctctcaaattcttctatcaagttttccatgtcaaatttctcaattatttccttcatcttcacacctccttca |
10244644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 10274273 - 10274371
Alignment:
| Q |
1 |
gaacattctcagcatcctttgttagactctcaaattcttctatcaccttttccaagtcaaacttttcaattatttccttcatcttcacac-ctccttca |
98 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| || ||| ||||||||||||||||||||| |||||||| |
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| T |
10274273 |
gaacattctcagcatcctttgttagcctctcaaattcttctatcaccttttccatgtcaaatttctcagttatttccttcatcttcacacactccttca |
10274371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 10286078 - 10286175
Alignment:
| Q |
1 |
gaacattctcagcatcctttgttagactctcaaattcttctatcaccttttccaagtcaaacttttcaattatttccttcatcttcacacctccttcaa |
99 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||| | ||||| | ||||||||||||||||| ||||||||| |
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| T |
10286078 |
gaacattttcagcatcctttgttagcctctcaaattcttctaccaccttttccaagtcatatacttcaactttttccttcatcttcaca-ctccttcaa |
10286175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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