View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3770_low_2 (Length: 631)

Name: NF3770_low_2
Description: NF3770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3770_low_2
NF3770_low_2
[»] chr5 (10 HSPs)
chr5 (1-622)||(41433654-41434273)
chr5 (287-517)||(41446652-41446882)
chr5 (1-235)||(41446374-41446613)
chr5 (532-622)||(41446921-41447011)
chr5 (291-360)||(36212964-36213033)
chr5 (289-360)||(31113402-31113473)
chr5 (289-360)||(5123500-5123571)
chr5 (294-341)||(14119193-14119240)
chr5 (289-371)||(18244641-18244723)
chr5 (289-325)||(2760309-2760345)
[»] chr6 (7 HSPs)
chr6 (288-360)||(21910273-21910344)
chr6 (300-363)||(278456-278519)
chr6 (290-360)||(21028845-21028913)
chr6 (290-360)||(21028982-21029050)
chr6 (297-332)||(27432259-27432294)
chr6 (298-360)||(29986816-29986878)
chr6 (288-360)||(28933206-28933278)
[»] chr4 (15 HSPs)
chr4 (288-372)||(16994146-16994230)
chr4 (289-360)||(35334100-35334171)
chr4 (289-362)||(33529323-33529396)
chr4 (299-358)||(53084963-53085022)
chr4 (298-360)||(8059037-8059099)
chr4 (289-360)||(2434627-2434698)
chr4 (297-332)||(18069264-18069299)
chr4 (289-360)||(31307068-31307139)
chr4 (289-360)||(38766157-38766228)
chr4 (298-360)||(3649057-3649119)
chr4 (288-346)||(13686684-13686742)
chr4 (298-360)||(17135164-17135226)
chr4 (288-360)||(7096164-7096236)
chr4 (289-357)||(9012341-9012409)
chr4 (288-332)||(45994618-45994662)
[»] chr2 (4 HSPs)
chr2 (289-361)||(17285739-17285811)
chr2 (289-364)||(17981562-17981636)
chr2 (288-360)||(5394464-5394536)
chr2 (288-324)||(26296463-26296499)
[»] chr3 (6 HSPs)
chr3 (294-373)||(25739142-25739221)
chr3 (288-360)||(25224767-25224839)
chr3 (288-360)||(38331196-38331268)
chr3 (289-360)||(30995967-30996038)
chr3 (297-332)||(38349811-38349846)
chr3 (289-377)||(40294663-40294751)
[»] chr8 (6 HSPs)
chr8 (288-377)||(36994501-36994590)
chr8 (291-344)||(13005682-13005735)
chr8 (289-360)||(4125026-4125097)
chr8 (289-360)||(7839255-7839326)
chr8 (289-360)||(13468747-13468818)
chr8 (289-337)||(24988590-24988638)
[»] chr7 (6 HSPs)
chr7 (289-333)||(1424668-1424712)
chr7 (289-360)||(31492171-31492242)
chr7 (299-360)||(4059705-4059766)
chr7 (316-360)||(44450775-44450819)
chr7 (299-360)||(7265325-7265386)
chr7 (286-318)||(24579453-24579485)
[»] chr1 (10 HSPs)
chr1 (289-357)||(15642526-15642594)
chr1 (297-360)||(24801449-24801512)
chr1 (289-333)||(49071672-49071716)
chr1 (288-371)||(22022177-22022260)
chr1 (289-360)||(32534151-32534221)
chr1 (298-377)||(40019292-40019370)
chr1 (297-332)||(40701585-40701620)
chr1 (289-339)||(9639559-9639609)
chr1 (297-371)||(42266820-42266894)
chr1 (289-377)||(7242809-7242897)
[»] scaffold0189 (1 HSPs)
scaffold0189 (291-360)||(11020-11089)
[»] scaffold0182 (1 HSPs)
scaffold0182 (289-360)||(26399-26470)
[»] scaffold0003 (1 HSPs)
scaffold0003 (297-332)||(55069-55104)


Alignment Details
Target: chr5 (Bit Score: 541; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 1 - 622
Target Start/End: Original strand, 41433654 - 41434273
Alignment:
Q  1 gaattgaagcaaggaagaactgtcatcgaggcggcataaaaaatgagaagaagaagatctaacatgagtgaacaacaagaaaaactgcaaacac-gaatt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   |||||||||||||||| |||||    
T  41433654 gaattgaagcaaggaagaactgtcatcgaggcggcataaaaaatgagaagaagaagatctaacatgagtgcacaa---gaaaaactgcaaacacagaatt 41433750  T
Q  100 agcaaccaacccatgtatgatcagactagttgtggaggagctttagtgtttgctatttgctagaaagtgcacatggaattgcaactgacgcctatatatt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||    
T  41433751 agcaaccaacccatgtatgatcagactagttgtggaggagctttagtgtttgctatttgctagaaagtgcacatggaattgcaaatgacgaatatatatt 41433850  T
Q  200 tatacagcaagcttttatcattaccaaaatctcaagcgagtattcaatttcagtactattaaggttttggtgtaaatgaagtatcatatgcaactgcgga 299  Q
    |||| |||||| |||||||||||||||||| ||||| |||||||||||||||| |  ||||||||||||||| |||||||||||||||||||||||||||    
T  41433851 tatatagcaagattttatcattaccaaaatgtcaagggagtattcaatttcaggaaaattaaggttttggtgcaaatgaagtatcatatgcaactgcgga 41433950  T
Q  300 gactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaatgttactgcatatccaaacttgagttcgaatccgggttt 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41433951 gactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaatgttactgcatatccaaacttgagttcgaatctgggttt 41434050  T
Q  400 ttggttgagctagaagagactcatgcaatctcatataaacgctccttggtattgtgcacacaacgtctctaaagtataaactaaattggcacaaatttct 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  41434051 ttggttgagctagaagagactcatgcaatctcatataaacgctccttggtattgtgcacacaacgtctctaaagtataaactaaatggacacaaatttct 41434150  T
Q  500 gaaatggaaaagtcaaaagtttaaatactacaacaactaacatatcataagtctacataatttctatatttgacaaagttgttgcatagaagtcaattct 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41434151 gaaatggaaaagtcaaaagtttaaatactacaacaactaacatatcataagtctacataatttctatatttgacaaagttgttgcatagaagtcaattct 41434250  T
Q  600 gatgccaaaaatttctaacccct 622  Q
    |||||||||||||||||||||||    
T  41434251 gatgccaaaaatttctaacccct 41434273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 287 - 517
Target Start/End: Original strand, 41446652 - 41446882
Alignment:
Q  287 atgcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaatgttactgcatatccaaacttgagtt 386  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  41446652 atgcaacagcggagactaatctctcgagtcttgtgggacccaaatgagcggtaaactctctgtaagagttttaacattactgcatatccaaacttgagtt 41446751  T
Q  387 cgaatccgggtttttggttgagctagaagagactcatgcaatctcatataaacgctccttggtattgtgcacacaacgtctctaaagtataaactaaatt 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  41446752 cgaatccgggtttttggttgagctagaagagactcatgcaatctcatataaacgctctttggtattgtgcacacaacgtctctaaagtataaactaaatg 41446851  T
Q  487 ggcacaaatttctgaaatggaaaagtcaaaa 517  Q
    | |  ||| |||||||||||||| |||||||    
T  41446852 gaccaaaaattctgaaatggaaaggtcaaaa 41446882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 41446374 - 41446613
Alignment:
Q  1 gaattgaagcaaggaagaactgtcatcgaggcggcataaaaaatgagaagaagaagatctaacatgagtgaacaacaagaaaaactgcaaacac-gaatt 99  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||   |||||||||| |||||||||||| |||||||||||||||||||||| |||||    
T  41446374 gaattgaagcaaggaagaactgtcatcgaggcagcatataaaatg---agaagaagatataacatgagtgagcaacaagaaaaactgcaaacacagaatt 41446470  T
Q  100 agcaaccaaccc-------atgtatgatcagactagttgtggaggagctttagtgtttgctatttgctagaaagtgcacatggaattgcaactgacgcct 192  Q
    ||||||||||||       ||||||||||||||||||||||||||||||  || |||| |||||||||||| ||||||||||||||||||| ||| |  |    
T  41446471 agcaaccaacccatgtatgatgtatgatcagactagttgtggaggagctcaagggtttactatttgctagagagtgcacatggaattgcaaatgatgaat 41446570  T
Q  193 atatatttatacagcaagcttttatcattaccaaaatctcaag 235  Q
    ||||| ||||| ||| || |||||||||||||||||| |||||    
T  41446571 atataattatatagccagattttatcattaccaaaatgtcaag 41446613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 532 - 622
Target Start/End: Original strand, 41446921 - 41447011
Alignment:
Q  532 acaactaacatatcataagtctacataatttctatatttgacaaagttgttgcatagaagtcaattctgatgccaaaaatttctaacccct 622  Q
    |||||||| |||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  41446921 acaactaatatatcataagtcttaataatttctatatttgacaaagttgttgcatataagtcaattctgatgccaaaaatttctaacccct 41447011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 360
Target Start/End: Complemental strand, 36213033 - 36212964
Alignment:
Q  291 aactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    |||||||||||| |||| ||||||  |||||||||||||||| |||| ||||||||  ||||||||||||    
T  36213033 aactgcggagaccaatccctcgagcattgtgggacctaaatgggcggcaaactctccctaagagttttaa 36212964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 289 - 360
Target Start/End: Complemental strand, 31113473 - 31113402
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    ||||||||||||||||||| ||||||| |||||||| | ||||| ||||||  |||||  ||||||||||||    
T  31113473 gcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccctaagagttttaa 31113402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 5123500 - 5123571
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    ||||||||||||||||||| ||||||  |||||||||| ||||| |||| |  |||||  ||||||||||||    
T  5123500 gcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaa 5123571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 341
Target Start/End: Original strand, 14119193 - 14119240
Alignment:
Q  294 tgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaa 341  Q
    |||||||||||||| |||||| ||| || |||||||||||||||||||    
T  14119193 tgcggagactaatccctcgagccttttgagacctaaatgagcggtaaa 14119240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 289 - 371
Target Start/End: Complemental strand, 18244723 - 18244641
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaatgttactgcat 371  Q
    ||||||||||||||||||||||| ||| |||||| ||| ||||| | || ||| ||||   ||||||||||||| | ||||||    
T  18244723 gcaactgcggagactaatctctcaagtattgtggaacccaaatgggtggaaaaatctcccaaagagttttaatgctgctgcat 18244641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 2760345 - 2760309
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggac 325  Q
    |||||||| |||||||||| |||||||||||||||||    
T  2760345 gcaactgcagagactaatccctcgagtcttgtgggac 2760309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 288 - 360
Target Start/End: Complemental strand, 21910344 - 21910273
Alignment:
Q  288 tgcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    |||||||||||||||||||| || |||| ||||||||||||||||||||| | ||||||| ||||||||||||    
T  21910344 tgcaactgcggagactaatccct-gagtattgtgggacctaaatgagcggcagactctctctaagagttttaa 21910273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 363
Target Start/End: Complemental strand, 278519 - 278456
Alignment:
Q  300 gactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaatgt 363  Q
    |||||||| || |||| ||||||||||||||||  ||| ||||||||  |||||||||||||||    
T  278519 gactaatcccttgagttttgtgggacctaaatggacggcaaactctccataagagttttaatgt 278456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 360
Target Start/End: Original strand, 21028845 - 21028913
Alignment:
Q  290 caactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    |||||||||||||||||| || ||| ||||||| ||| ||||| |||| ||||||||  ||||||||||||    
T  21028845 caactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaaactctc--taagagttttaa 21028913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 360
Target Start/End: Original strand, 21028982 - 21029050
Alignment:
Q  290 caactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    |||||||||||||||||| || ||| ||||||| ||| ||||| |||| ||||||||  ||||||||||||    
T  21028982 caactgcggagactaatcccttgagccttgtggcacccaaatgggcggcaaactctc--taagagttttaa 21029050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 332
Target Start/End: Complemental strand, 27432294 - 27432259
Alignment:
Q  297 ggagactaatctctcgagtcttgtgggacctaaatg 332  Q
    |||||||||||| |||||||||||||||||||||||    
T  27432294 ggagactaatctttcgagtcttgtgggacctaaatg 27432259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 298 - 360
Target Start/End: Complemental strand, 29986878 - 29986816
Alignment:
Q  298 gagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    |||| ||||||||||||| |||||||||  |||||||||| ||||||||   |||||||||||    
T  29986878 gagattaatctctcgagttttgtgggactcaaatgagcggcaaactctcctaaagagttttaa 29986816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 360
Target Start/End: Complemental strand, 28933278 - 28933206
Alignment:
Q  288 tgcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    |||||||||||| |||| || ||||||  |||||| ||| ||||| |||| ||||||||| ||||| ||||||    
T  28933278 tgcaactgcggatactattcactcgagcattgtggaacccaaatgggcggcaaactctctctaagaattttaa 28933206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 288 - 372
Target Start/End: Complemental strand, 16994230 - 16994146
Alignment:
Q  288 tgcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaatgttactgcata 372  Q
    |||||||||||||||||||| |||||||||||||| ||||||||| || | ||||||||  | |||||||||||| |||| ||||    
T  16994230 tgcaactgcggagactaatcactcgagtcttgtggaacctaaatgggcagcaaactctcctttagagttttaatgctactacata 16994146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 35334100 - 35334171
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||| ||||   ||||||| ||||||||||||    
T  35334100 gcaactgcggagactaatccctcgagtattgtgggacccaaatgggcggcggactctctctaagagttttaa 35334171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 33529396 - 33529323
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaatg 362  Q
    ||||||||||||||||||| ||| ||| |||||||||| ||||| |||| || |||||  ||||||||||||||    
T  33529396 gcaactgcggagactaatccctccagtattgtgggacccaaatgggcggcaagctctccctaagagttttaatg 33529323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 53084963 - 53085022
Alignment:
Q  299 agactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagtttt 358  Q
    ||||||||||||||||| |||| |||||||||| | ||||||||||||  ||||||||||    
T  53084963 agactaatctctcgagttttgtcggacctaaataaacggtaaactctccctaagagtttt 53085022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 360
Target Start/End: Original strand, 8059037 - 8059099
Alignment:
Q  298 gagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    |||||||||| ||| |||||||||||||| ||||| | ||| |||||||| ||||||||||||    
T  8059037 gagactaatcactccagtcttgtgggacccaaatgggtggtcaactctctctaagagttttaa 8059099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 360
Target Start/End: Complemental strand, 2434698 - 2434627
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    ||||||||||| || |||| |||||| ||||| |||||||||||||||  ||||| |  |||||||||||||    
T  2434698 gcaactgcggataccaatcactcgagccttgtaggacctaaatgagcgacaaacttttcgtaagagttttaa 2434627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 332
Target Start/End: Original strand, 18069264 - 18069299
Alignment:
Q  297 ggagactaatctctcgagtcttgtgggacctaaatg 332  Q
    |||||||||||| |||||||||||||||||||||||    
T  18069264 ggagactaatctttcgagtcttgtgggacctaaatg 18069299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 31307068 - 31307139
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    ||||||||||||||||||| ||||||  |||||||||| ||||| |||| |  |||||  ||||||||||||    
T  31307068 gcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaa 31307139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 360
Target Start/End: Complemental strand, 38766228 - 38766157
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    ||||||||||||||||||| ||||||  ||||| |||| ||||| |||| | ||||||  ||||||||||||    
T  38766228 gcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggcagactctccctaagagttttaa 38766157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 298 - 360
Target Start/End: Original strand, 3649057 - 3649119
Alignment:
Q  298 gagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    ||||||||||  |||||||||||| || | |||||||||| ||||||||  ||||||||||||    
T  3649057 gagactaatccttcgagtcttgtgcgatccaaatgagcggaaaactctccctaagagttttaa 3649119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 288 - 346
Target Start/End: Complemental strand, 13686742 - 13686684
Alignment:
Q  288 tgcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctc 346  Q
    |||||||| |||||||||||||||||| |||||| |||| |||||  ||| ||||||||    
T  13686742 tgcaactgtggagactaatctctcgagccttgtgagacccaaatggacggcaaactctc 13686684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 298 - 360
Target Start/End: Complemental strand, 17135226 - 17135164
Alignment:
Q  298 gagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    |||||||||| |||||||||| ||||||  ||||| |||| ||||||||  ||||||||||||    
T  17135226 gagactaatccctcgagtcttctgggactcaaatgcgcggcaaactctccctaagagttttaa 17135164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 360
Target Start/End: Complemental strand, 7096236 - 7096164
Alignment:
Q  288 tgcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    |||||||| | |||||||||||| |||  ||||  |||||||||| ||||||| |||||  ||||||||||||    
T  7096236 tgcaactgtgcagactaatctcttgagcattgtaagacctaaatgggcggtaagctctccctaagagttttaa 7096164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 357
Target Start/End: Complemental strand, 9012409 - 9012341
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttt 357  Q
    ||||||||||||||||||| ||||||  |||||||||| || || |||| || |||||  |||||||||    
T  9012409 gcaactgcggagactaatccctcgagcattgtgggacccaagtgggcggcaagctctccctaagagttt 9012341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 45994662 - 45994618
Alignment:
Q  288 tgcaactgcggagactaatctctcgagtcttgtgggacctaaatg 332  Q
    |||||||||||||||||||||||||||  ||||| |||| |||||    
T  45994662 tgcaactgcggagactaatctctcgagcattgtgagacccaaatg 45994618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 289 - 361
Target Start/End: Original strand, 17285739 - 17285811
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaat 361  Q
    |||||||| ||||||||||  || | |||||| ||| |||||||||||||||||||||||||||| |||||||    
T  17285739 gcaactgcagagactaatccatcaaatcttgtaggatctaaatgagcggtaaactctctgtaagaattttaat 17285811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 289 - 364
Target Start/End: Complemental strand, 17981636 - 17981562
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaatgtt 364  Q
    ||||||||||||||||||||||||||  |||||||||| ||||  |||| || |||||  ||||||||||||||||    
T  17981636 gcaactgcggagactaatctctcgagcattgtgggacccaaat-tgcggcaagctctccctaagagttttaatgtt 17981562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 360
Target Start/End: Complemental strand, 5394536 - 5394464
Alignment:
Q  288 tgcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    |||||||||||||||||||| | ||||  |||||||||| ||||| |||| |  |||||  ||||||||||||    
T  5394536 tgcaactgcggagactaatcccacgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaa 5394464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 26296499 - 26296463
Alignment:
Q  288 tgcaactgcggagactaatctctcgagtcttgtggga 324  Q
    |||||||| |||||||||||||||||| |||||||||    
T  26296499 tgcaactgtggagactaatctctcgagccttgtggga 26296463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 294 - 373
Target Start/End: Complemental strand, 25739221 - 25739142
Alignment:
Q  294 tgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaatgttactgcatat 373  Q
    ||||||||||||| | ||||||||| ||||||| ||||| |||| ||||||||  |||||||||||||| | ||||||||    
T  25739221 tgcggagactaatttatcgagtcttatgggacccaaatgggcggaaaactctccctaagagttttaatgctcctgcatat 25739142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 360
Target Start/End: Complemental strand, 25224839 - 25224767
Alignment:
Q  288 tgcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    |||||||||||||||||||| || |||  |||||||||||||||| |||| ||  ||||  ||||||||||||    
T  25224839 tgcaactgcggagactaatcccttgagcattgtgggacctaaatgggcggcaagttctccttaagagttttaa 25224767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 360
Target Start/End: Complemental strand, 38331268 - 38331196
Alignment:
Q  288 tgcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    |||||||||||||||||||| ||| |   |||||||||| ||||| |||| || |||||| ||||||||||||    
T  38331268 tgcaactgcggagactaatccctcaaacattgtgggacccaaatgggcggcaagctctctctaagagttttaa 38331196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 30995967 - 30996038
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    ||||||||||||||||||| ||||||  |||||||||| | ||| |||| | ||||||  ||||||||||||    
T  30995967 gcaactgcggagactaatccctcgagcattgtgggacccagatgggcggcagactctccctaagagttttaa 30996038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 332
Target Start/End: Complemental strand, 38349846 - 38349811
Alignment:
Q  297 ggagactaatctctcgagtcttgtgggacctaaatg 332  Q
    |||||||||||| |||||||||||||||||||||||    
T  38349846 ggagactaatctttcgagtcttgtgggacctaaatg 38349811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 377
Target Start/End: Complemental strand, 40294751 - 40294663
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaatgttactgcatatccaa 377  Q
    |||||||||||||||||||  |||||| ||||||||   |||||||||| || || ||  ||||||||||||  ||  |||||||||||    
T  40294751 gcaactgcggagactaatccttcgagtattgtgggattcaaatgagcggcaagctttccctaagagttttaacattgttgcatatccaa 40294663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 288 - 377
Target Start/End: Original strand, 36994501 - 36994590
Alignment:
Q  288 tgcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaatgttactgcatatccaa 377  Q
    ||||||||| |||||||||| |||||| ||||||||||| ||||| || | ||||||||  |||||||||||| | | |||||| |||||    
T  36994501 tgcaactgcagagactaatccctcgagccttgtgggacccaaatgggcagcaaactctccttaagagttttaacgctgctgcatgtccaa 36994590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 13005682 - 13005735
Alignment:
Q  291 aactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactc 344  Q
    ||||||||||||| |||||| ||| |||||||||||||||||  ||||||||||    
T  13005682 aactgcggagactgatctcttgagccttgtgggacctaaatggacggtaaactc 13005735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 4125026 - 4125097
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    ||||||||||||||||||| ||||||  |||||||||| ||||| |||| |  |||||  ||||||||||||    
T  4125026 gcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaa 4125097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 7839255 - 7839326
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    ||||||||||||||||||| ||||||  |||||||||| ||||| |||| |  |||||  ||||||||||||    
T  7839255 gcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcatgctctccctaagagttttaa 7839326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 13468747 - 13468818
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    |||||||||||||||||||  |||||  |||||||||  ||||| |||| | ||||||| ||||||||||||    
T  13468747 gcaactgcggagactaatccttcgagcattgtgggactcaaatgggcggcagactctctctaagagttttaa 13468818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 24988638 - 24988590
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcgg 337  Q
    |||| |||||||||||||| ||||||| |||||||||  ||||||||||    
T  24988638 gcaattgcggagactaatccctcgagtattgtgggactcaaatgagcgg 24988590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 1424712 - 1424668
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatga 333  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||    
T  1424712 gcaactgcggagactaatctctcaagtcttgtgggacccaaatga 1424668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 289 - 360
Target Start/End: Complemental strand, 31492242 - 31492171
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    ||||||||||||||||||| ||||||  |||||||||||||||| |||| |  |||||  ||||||||||||    
T  31492242 gcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaa 31492171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 299 - 360
Target Start/End: Original strand, 4059705 - 4059766
Alignment:
Q  299 agactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    ||||||||| ||||||||||||| |||| |||| | ||| ||||||||| ||||||||||||    
T  4059705 agactaatccctcgagtcttgtgtgacccaaataaacggaaaactctctctaagagttttaa 4059766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 44450775 - 44450819
Alignment:
Q  316 cttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    |||||||||||||||||| ||||||||||||||||| | ||||||    
T  44450775 cttgtgggacctaaatgaacggtaaactctctgtaaaatttttaa 44450819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 360
Target Start/End: Original strand, 7265325 - 7265386
Alignment:
Q  299 agactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    |||||||||  |||||| |||||||||| |||||||| | ||||||||  ||||||||||||    
T  7265325 agactaatcattcgagtattgtgggacccaaatgagcagcaaactctccctaagagttttaa 7265386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 318
Target Start/End: Original strand, 24579453 - 24579485
Alignment:
Q  286 tatgcaactgcggagactaatctctcgagtctt 318  Q
    ||||||||||| |||||||||||||||||||||    
T  24579453 tatgcaactgcagagactaatctctcgagtctt 24579485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 289 - 357
Target Start/End: Complemental strand, 15642594 - 15642526
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttt 357  Q
    ||||||||||||| ||||||||||||  |||||||||| ||||| |||| ||||||||  |||||||||    
T  15642594 gcaactgcggagaataatctctcgagcattgtgggacccaaatgggcggcaaactctccctaagagttt 15642526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 297 - 360
Target Start/End: Complemental strand, 24801512 - 24801449
Alignment:
Q  297 ggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    |||||||||||||| ||||||||||||||  |||||  ||||||||||||  ||||||||||||    
T  24801512 ggagactaatctcttgagtcttgtgggactcaaatggacggtaaactctccctaagagttttaa 24801449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 49071716 - 49071672
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatga 333  Q
    ||||||||||||||||||||||||||  |||||||||| ||||||    
T  49071716 gcaactgcggagactaatctctcgagcattgtgggacccaaatga 49071672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 371
Target Start/End: Complemental strand, 22022260 - 22022177
Alignment:
Q  288 tgcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaatgttactgcat 371  Q
    |||||||||||||||||||| ||||| | |||||||||| ||||| | || ||  ||||  |||||||||||||| | ||||||    
T  22022260 tgcaactgcggagactaatccctcgaatattgtgggacccaaatgggtggcaagttctccctaagagttttaatgctgctgcat 22022177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 360
Target Start/End: Complemental strand, 32534221 - 32534151
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    |||| |||||||||||| ||||||||  ||||| ||||| |||| ||||||| |||||| ||||||||||||    
T  32534221 gcaattgcggagactaacctctcgagcattgtgagacct-aatgggcggtaagctctctctaagagttttaa 32534151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 377
Target Start/End: Complemental strand, 40019370 - 40019292
Alignment:
Q  298 gagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaatgttactgcatatccaa 377  Q
    ||||||||||||| |||| ||||||||| ||||||||  | ||||||||   ||||||||||| ||| ||||||||||||    
T  40019370 gagactaatctcttgagttttgtgggacttaaatgag-tgcaaactctccccaagagttttaacgttgctgcatatccaa 40019292  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 332
Target Start/End: Complemental strand, 40701620 - 40701585
Alignment:
Q  297 ggagactaatctctcgagtcttgtgggacctaaatg 332  Q
    |||||||||||| |||||||||||||||||||||||    
T  40701620 ggagactaatctttcgagtcttgtgggacctaaatg 40701585  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 9639559 - 9639609
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggta 339  Q
    |||| ||||||||||||||||||||||||| | ||||| ||||| ||||||    
T  9639559 gcaattgcggagactaatctctcgagtcttttaggacccaaatgggcggta 9639609  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 297 - 371
Target Start/End: Complemental strand, 42266894 - 42266820
Alignment:
Q  297 ggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaatgttactgcat 371  Q
    ||||||||||| || |||||||||||||  |||||| |||| || |||||| |||| || |||||||| ||||||    
T  42266894 ggagactaatcacttgagtcttgtgggatttaaatgggcggcaagctctctttaagtgtgttaatgttgctgcat 42266820  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 289 - 377
Target Start/End: Original strand, 7242809 - 7242897
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaatgttactgcatatccaa 377  Q
    ||||||||||||||||||| ||||||| || || ||   ||||| | |||| ||||||  |||||||||||| ||| |||||| |||||    
T  7242809 gcaactgcggagactaatccctcgagtattatgagattcaaatgggaggtagactctccctaagagttttaacgttgctgcatgtccaa 7242897  T

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Target: scaffold0189 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 291 - 360
Target Start/End: Complemental strand, 11089 - 11020
Alignment:
Q  291 aactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    ||||| ||||| |||||| |||||| |||||  ||||||||| |||| |||||||| |||||||||||||    
T  11089 aactgtggagattaatctatcgagttttgtgaaacctaaatgggcggcaaactctccgtaagagttttaa 11020  T

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Target: scaffold0182 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 360
Target Start/End: Complemental strand, 26470 - 26399
Alignment:
Q  289 gcaactgcggagactaatctctcgagtcttgtgggacctaaatgagcggtaaactctctgtaagagttttaa 360  Q
    |||||||||||||||||||||||||   |||||||||| ||||| |||| |  |||||  ||||||||||||    
T  26470 gcaactgcggagactaatctctcgaacattgtgggacccaaatgggcggcaggctctccctaagagttttaa 26399  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 332
Target Start/End: Original strand, 55069 - 55104
Alignment:
Q  297 ggagactaatctctcgagtcttgtgggacctaaatg 332  Q
    |||||||||||| |||||||||||||||||||||||    
T  55069 ggagactaatctttcgagtcttgtgggacctaaatg 55104  T

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