View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3770_low_3 (Length: 624)

Name: NF3770_low_3
Description: NF3770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3770_low_3
NF3770_low_3
[»] chr7 (16 HSPs)
chr7 (73-529)||(8356749-8357203)
chr7 (18-206)||(8365029-8365211)
chr7 (301-529)||(8365320-8365549)
chr7 (241-422)||(8351749-8351935)
chr7 (526-604)||(8357806-8357884)
chr7 (421-529)||(8351999-8352107)
chr7 (241-318)||(8413019-8413097)
chr7 (73-201)||(8351560-8351686)
chr7 (122-200)||(8427496-8427574)
chr7 (73-207)||(8412831-8412961)
chr7 (526-589)||(8366210-8366272)
chr7 (535-587)||(8353211-8353263)
chr7 (136-199)||(8531502-8531565)
chr7 (241-351)||(8531730-8531847)
chr7 (72-118)||(8446249-8446295)
chr7 (69-155)||(8420290-8420372)
[»] scaffold0141 (1 HSPs)
scaffold0141 (18-111)||(9068-9161)
[»] chr4 (2 HSPs)
chr4 (281-418)||(7287171-7287306)
chr4 (423-498)||(7287047-7287122)


Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 73 - 529
Target Start/End: Original strand, 8356749 - 8357203
Alignment:
Q  73 aacaaatgcttcaatcttcttctaatcatgatccaatctaaaatccgtgtcatgagaaataccgaaggagatgagaaaaaataaacaacaacatcagaaa 172  Q
    |||||||||||||||||| ||||||||||| ||| ||||||||| | |  ||||||||||||  ||||||||| |||||||||||| || ||||||||||    
T  8356749 aacaaatgcttcaatctttttctaatcatgttccgatctaaaattcat--catgagaaatactaaaggagatgcgaaaaaataaaccacgacatcagaaa 8356846  T
Q  173 ccatagttactgctacatgcattcattctctaaaaatatagtttgattcagatactgacacctttagtgtggttttggtctcgtttaaaaatctagtcat 272  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||||||||    
T  8356847 ctacagttactgctacatgcattcattctctaaaaatatagtttgattcagatactgacaacttta--gtggttttggtctcgtttaaaaatctagtcat 8356944  T
Q  273 caaattattatgttctaaaaggtataac-caattcctgtaatttctagtatttttacaatgttggattagattctaggacgacgaaggca-tataaacat 370  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  8356945 caaattattatgttctaaaaggtataactcaattcctgtaatttctagtatttttacaatgttgaattagattctaggacgacgaaggcagtataaacat 8357044  T
Q  371 tttcggccagtgttttgtgacataatagttatggagtgttttattttgattagccaaagtaaattataacaacgattatttaaataagcataagttcaga 470  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||    
T  8357045 tttcgaccagtgttttgtgacataatagttatggagtgttttattttgatta-acaaagtaaattataacaacgataatttaaataagcataagttcaga 8357143  T
Q  471 tcatatataggtgctataaacataaacataataaaacttgtcaa-agaacaatcaaagag 529  Q
    ||||| ||||||||||||||||| |||||||||||||||  ||| |||||||||||||||    
T  8357144 tcatacataggtgctataaacatgaacataataaaactttgcaacagaacaatcaaagag 8357203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 8365029 - 8365211
Alignment:
Q  18 aaagatagcagtttatgagaatggcctgaatctcaatataataggtattcgaaccaacaaatgcttcaatcttcttctaatcatgatccaatctaaaatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8365029 aaagatagcagtttatgagaatggcctgaatctcaatataataggtattcgaaccaacaaatgcttcaatcttcttctaatcatgatccaatctaaaatc 8365128  T
Q  118 cgtgtcatgagaaataccgaaggagatgagaaaaaataaacaacaacatcagaaaccatagttactgctacatgcattcattctctaaa 206  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  8365129 c--gtcatgagaaataccgaaggagatgagaaaaaataaacaacaacatcagaaacca----tactgctacatgcattcattctctaaa 8365211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 301 - 529
Target Start/End: Original strand, 8365320 - 8365549
Alignment:
Q  301 caattcctgtaatttctagtatttttacaatgttggattagattctaggacgacgaaggca-tataaacattttcggccagtgttttgtgacataatagt 399  Q
    ||||||||  || |||||||||||||||||||||||||||  ||||||||| ||||| ||| |||||| |||||| ||||||||||||||||||||||||    
T  8365320 caattccttcaaattctagtatttttacaatgttggattaacttctaggacaacgaaagcagtataaagattttcagccagtgttttgtgacataatagt 8365419  T
Q  400 tatggagtgttttattttgattagccaaagtaaattataacaacgattatttaaataagcataagttcagatcatatataggtgctataaacataaacat 499  Q
    |||||||||| |||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||  ||||||||||||||||||||||||| |||||    
T  8365420 tatggagtgtgttattttgatcagccaaagtaaattataacaacaattatttcaataagcataagtttggatcatatataggtgctataaacatcaacat 8365519  T
Q  500 aataaaacttgtcaaagaacaatcaaagag 529  Q
    ||||||||||  ||||||||||||||||||    
T  8365520 aataaaacttaccaaagaacaatcaaagag 8365549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 241 - 422
Target Start/End: Original strand, 8351749 - 8351935
Alignment:
Q  241 gtggttttggtctcgtttaaaaatctagtcatcaaattattatgttctaaaaggtataac-caattcctgtaatttctagtatttttacaatgttggatt 339  Q
    |||||| |||||||||||||||||||||||||| |||||| ||||||||||  ||||||| |||||||||||||||||| ||||||||||||||||||||    
T  8351749 gtggttgtggtctcgtttaaaaatctagtcatcgaattatcatgttctaaa--gtataactcaattcctgtaatttctattatttttacaatgttggatt 8351846  T
Q  340 agattctaggacgacgaaggca------tataaacattttcggccagtgttttgtgacataatagttatggagtgttttattttgatta 422  Q
    ||||| || |||||| ||||||      ||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||    
T  8351847 agattatatgacgacaaaggcagtgcagtataaacattttttaccagtgttttgtgacataatagttatggagtgtgttattttgatta 8351935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 526 - 604
Target Start/End: Original strand, 8357806 - 8357884
Alignment:
Q  526 agagactccatgacaaatttaaaacaaagtggtattcccttctttctatactctcaaatttgtcgaatgaaactcaact 604  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8357806 agagactccatgacaaatttaaaacaaagtggtattcccttctttctatactctcaaatttgtcgaatgaaactcaact 8357884  T

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Target: chr7; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 421 - 529
Target Start/End: Original strand, 8351999 - 8352107
Alignment:
Q  421 tagccaaagtaaattataacaacgattatttaaataagcataagttcagatcatatataggtgctataaacataaacataataaaacttgtcaaagaaca 520  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||   |||||||||||||||||||||||| |||||||||||||||  |||||||||    
T  8351999 tagccaaagtaaattattacaacgattatttcaataagcataagtttgaatcatatataggtgctataaacatgaacataataaaacttaccaaagaaca 8352098  T
Q  521 atcaaagag 529  Q
    | |||||||    
T  8352099 accaaagag 8352107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 8413019 - 8413097
Alignment:
Q  241 gtggttttggtctcgtttaaaaatctagtcatcaaattattatgttctaaaaggtataac-caattcctgtaatttcta 318  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8413019 gtggttgtggtctcatttaaaaatctagtcatcaaattattatgttctaaaaggtataactcaattcctgtaatttcta 8413097  T

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Target: chr7; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 8351560 - 8351686
Alignment:
Q  73 aacaaatgcttcaatcttcttctaatcatgatccaatctaaaatccgtgtcatgagaaataccgaaggagatgagaaaaaataaacaacaacatcagaaa 172  Q
    ||||||| |||||||||| ||||||| ||| ||| ||||||||| | |  |||||||||||  |||||||||| |||||||||||| || |||||||||     
T  8351560 aacaaattcttcaatctttttctaataatgttcctatctaaaattcat--catgagaaatattgaaggagatgcgaaaaaataaaccactacatcagaac 8351657  T
Q  173 ccatagttactgctacatgcattcattct 201  Q
    ||| |||||||||||||||||||||||||    
T  8351658 ccacagttactgctacatgcattcattct 8351686  T

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Target: chr7; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 8427574 - 8427496
Alignment:
Q  122 tcatgagaaataccgaaggagatgagaaaaaataaacaacaacatcagaaaccatagttactgctacatgcattcattc 200  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||||||||||| ||||||| || |||||||||||||    
T  8427574 tcatgagaaatactgaaggagatgagaaaaaataaaccactacatcagaaaccacagttactactgcatgcattcattc 8427496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 73 - 207
Target Start/End: Original strand, 8412831 - 8412961
Alignment:
Q  73 aacaaatgcttcaatcttcttctaatcatgatccaatctaaaatccgtgtcatgagaaataccgaaggagatgagaaaaaataaacaacaacatcagaaa 172  Q
    |||||||||||||||||| ||||||| ||| ||  ||||||||| | |  |||||||||||  |||||||||| |||||||||||| || |  ||||||     
T  8412831 aacaaatgcttcaatctttttctaattatgttcgtatctaaaattcat--catgagaaatattgaaggagatgcgaaaaaataaaccacta--tcagaag 8412926  T
Q  173 ccatagttactgctacatgcattcattctctaaaa 207  Q
    ||| |||||||||| ||||||||||||| ||||||    
T  8412927 ccacagttactgctgcatgcattcattcactaaaa 8412961  T

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Target: chr7; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 526 - 589
Target Start/End: Original strand, 8366210 - 8366272
Alignment:
Q  526 agagactccatgacaaatttaaaacaaagtggtattcccttctttctatactctcaaatttgtc 589  Q
    ||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||    
T  8366210 agagactccatgacaaatttagaacaatgtggtattccctt-tttctatactctcaaatttgtc 8366272  T

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Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 535 - 587
Target Start/End: Original strand, 8353211 - 8353263
Alignment:
Q  535 atgacaaatttaaaacaaagtggtattcccttctttctatactctcaaatttg 587  Q
    |||||||||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  8353211 atgacaaatttaaaactaagtggtattcccttctttttatcctctcaaatttg 8353263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 8531502 - 8531565
Alignment:
Q  136 gaaggagatgagaaaaaataaacaacaacatcagaaaccatagttactgctacatgcattcatt 199  Q
    ||||||||||||||||||||||| || ||||| || |||| |||||| ||||||||||||||||    
T  8531502 gaaggagatgagaaaaaataaaccactacatcggataccacagttacggctacatgcattcatt 8531565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 241 - 351
Target Start/End: Original strand, 8531730 - 8531847
Alignment:
Q  241 gtggttttggtctcgtttaaaaatctagtcatcaaattattatgttctaaa------aggtataac-caattcctgtaatttctagtatttttacaatgt 333  Q
    |||||||||||||| ||| |||||| ||||||| | |||| ||| ||||||      || |||||| ||||||||   ||||||||||||||| ||||||    
T  8531730 gtggttttggtctcttttgaaaatcaagtcatccagttataatgctctaaattttgaagatataactcaattcctaagatttctagtatttttccaatgt 8531829  T
Q  334 tggattagattctaggac 351  Q
    ||||||||||||||||||    
T  8531830 tggattagattctaggac 8531847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 8446249 - 8446295
Alignment:
Q  72 caacaaatgcttcaatcttcttctaatcatgatccaatctaaaatcc 118  Q
    |||||||||||||||||||||||||||||  ||| ||||| ||||||    
T  8446249 caacaaatgcttcaatcttcttctaatcacaatcaaatctgaaatcc 8446295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 8420290 - 8420372
Alignment:
Q  69 aaccaacaaatgcttcaatcttcttctaatcatgatccaatctaaaatccgtgtcatgagaaataccgaaggagatgagaaaaaata 155  Q
    ||||| ||||||| || |||||||||||||||   |||||||||||||||   |||||| || ||  ||||||||||||||||||||    
T  8420290 aaccatcaaatgcgtcgatcttcttctaatca--ctccaatctaaaatcc--atcatgaaaattattgaaggagatgagaaaaaata 8420372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 9068 - 9161
Alignment:
Q  18 aaagatagcagtttatgagaatggcctgaatctcaatataataggtattcgaaccaacaaatgcttcaatcttcttctaatcatgatccaatct 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| ||| ||||||||||||    
T  9068 aaagatagcagtttatgagaatggcctgaatctcaatataataggtattcaaaccaacgaatgcttcaattttcttcgaattatgatccaatct 9161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 281 - 418
Target Start/End: Complemental strand, 7287306 - 7287171
Alignment:
Q  281 tatgttctaaaaggtataac-caattcctgtaatttctagtatttttacaatgttggattagattctaggacgacgaaggca-tataaacattttcggcc 378  Q
    |||||||||||| ||||||| |||||||| | ||||||| |||||||||||| |||||||||||||||||| |||  ||||| ||||||||||||||| |    
T  7287306 tatgttctaaaaagtataactcaattcctttgatttctactatttttacaatcttggattagattctaggaggacagaggcagtataaacattttcggac 7287207  T
Q  379 agtgttttgtgacataatagttatggagtgttttattttg 418  Q
    | |||    |||||||||| ||||||||||| ||||||||    
T  7287206 aatgt----tgacataataattatggagtgtgttattttg 7287171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 423 - 498
Target Start/End: Complemental strand, 7287122 - 7287047
Alignment:
Q  423 gccaaagtaaattataacaacgattatttaaataagcataagttcagatcatatataggtgctataaacataaaca 498  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||    
T  7287122 gccaatgtaaattattacaacgattatttcaataagcataagttcagatcatatataggtgttataaacatcaaca 7287047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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