View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3770_low_6 (Length: 566)
Name: NF3770_low_6
Description: NF3770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3770_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Original strand, 5375360 - 5375918
Alignment:
| Q |
1 |
gaaaagggtcttgttgtaaaaaatgctggtggagttggaatgattgtagtaaacaatgaagcatatggtgaagagttaattgctgattctcatcttctac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5375360 |
gaaaagggtcttgttgtaaaaaatgctggtggagttggaatgattttggtaaacaatgaagcatatggtgaagagttaattgctgattctcatcttctac |
5375459 |
T |
|
| Q |
101 |
cagcagcagcattgggtcaaaaatcaagcactgttttaaaagactacgtttttactacgaaaaatccaagagctaaacttgtttttgggggcacacactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5375460 |
cagcagcagcattgggtcaaaaatcaagcactgttttaaaagactacgtttttactacgaaaaatccaagagctaaacttgtttttgggggcacacactt |
5375559 |
T |
|
| Q |
201 |
acaagttcaaccttcaccagtggtagcagcattcagttcaagaggaccaaatagtttaacaccaaagattctcaaaccggatttaatagctccaggtgta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5375560 |
acaagttcaaccttcaccagtggtagcagcattcagttcaagaggaccaaatagtttaacaccaaagattctcaaaccggatttaatagctccaggtgta |
5375659 |
T |
|
| Q |
301 |
aacattttagccggttggaccggtgcagttggtccaaccggcttagctcttgataagaggcacgtgaatttcaacattatatcaggaacttccatgtcat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5375660 |
aacattttagccggttggaccggtgcagttggtccaaccggcttagctcttgataagaggcacgtgaatttcaacattatatcgggaacttccatgtcat |
5375759 |
T |
|
| Q |
401 |
gtcctcacgcgagtggtttagctgctatagttaaaggtgcttaccccgaatggagccctgctgctatacggtcagcactaatgaccacagcatacacctc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5375760 |
gtcctcacgcgagtggtttagctgctatagttaaaggtgcttaccccgaatggagccctgctgctatacggtcagcactaatgaccacagcatacacctc |
5375859 |
T |
|
| Q |
501 |
gtacaaaaatggacaaacaattgtagatgttgcaaccgggaaaccggctactccctttg |
559 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5375860 |
gtacaaaaatggacaaacaattgtagatgttgcaaccgggaaaccggctactccctttg |
5375918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 311
Target Start/End: Complemental strand, 47367010 - 47366904
Alignment:
| Q |
205 |
gttcaaccttcaccagtggtagcagcattcagttcaagaggaccaaatagtttaacaccaaagattctcaaaccggatttaatagctccaggtgtaaaca |
304 |
Q |
| |
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|||||||| || |||||||| ||||| ||||| || ||||||||||||| | |||||||| || |||||||| || | ||||||||||| || |||| |
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| T |
47367010 |
gttcaaccatccccagtggtggcagctttcagctctagaggaccaaatatactcacaccaaaaatactcaaacccgacctgatagctccaggagtcaaca |
47366911 |
T |
|
| Q |
305 |
ttttagc |
311 |
Q |
| |
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|| |||| |
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|
| T |
47366910 |
ttctagc |
47366904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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