View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3770_low_8 (Length: 501)

Name: NF3770_low_8
Description: NF3770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3770_low_8
NF3770_low_8
[»] chr3 (4 HSPs)
chr3 (18-488)||(45249841-45250310)
chr3 (92-187)||(1723679-1723775)
chr3 (361-484)||(1723479-1723603)
chr3 (267-314)||(1723611-1723658)
[»] chr8 (5 HSPs)
chr8 (230-486)||(1663114-1663370)
chr8 (230-488)||(1746818-1747076)
chr8 (292-482)||(40358163-40358353)
chr8 (27-187)||(1747091-1747250)
chr8 (27-187)||(1663385-1663544)
[»] chr1 (2 HSPs)
chr1 (283-482)||(36468943-36469142)
chr1 (55-116)||(11523674-11523734)
[»] chr4 (1 HSPs)
chr4 (415-488)||(45251959-45252032)
[»] chr7 (1 HSPs)
chr7 (289-323)||(3252481-3252515)
[»] chr2 (1 HSPs)
chr2 (292-389)||(6700945-6701042)


Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 488
Target Start/End: Original strand, 45249841 - 45250310
Alignment:
Q  18 ttatgaatatcatgaaataaatggaaagctaaatatggttagaatagtaaaaagaggtcccaacttcccctagaaaagacctaggagcaagatcaaaagc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45249841 ttatgaatatcatgaaataaatggaaagctaaatatggttagaatagtaaaaagaggtcccaacttcccctagaaaagagctaggagcaagatcaaaagc 45249940  T
Q  118 ctaaa-ctatacaaacaaaattaatgcaaatcaaatgaaacaactttatgtaattaaacccaataaaaggagnnnnnnnnncagttaatttaattataac 216  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||     
T  45249941 ctaaaactatacaaacaaaattaatgcaaatcaaatgaaacaactttatgtaattaaacccaataaaaggagaaaaaaa--cagttaatttaattataat 45250038  T
Q  217 ttaagcatgccaaaatgaggttaaaattatagtacctgaggttcagtgaacttaacaccttgaccagcagaaaggccagcaagatcatgttccatatatt 316  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45250039 ttaagcatgccaaaaggaggttaaaattatagtacctgaggttcagtgaacttaacaccttgaccagcagaaaggccagcaagatcatgttccatatatt 45250138  T
Q  317 caaataccaaataaagactacatgacattctagaagtaaccaatccttcaagctttacaacatttggatgatcaagtttcctcaaaacaagtatctctct 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45250139 caaataccaaataaagactacatgacattctagaagtaaccaatccttcaagctttacaacatttggatgatcaagtttcctcaaaacaagtatctctct 45250238  T
Q  417 tgccataaacttcacactctctggctccaaattatcaaatctcacttttttcaatgctactatcttccctgt 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45250239 tgccataaacttcacactctctggctccaaattatcaaatctcacttttttcaatgctactatcttccctgt 45250310  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 1723775 - 1723679
Alignment:
Q  92 aaagacctaggagcaagatcaaaagcctaaactatacaaacaaaattaatgcaaatcaaatgaaacaactttatgtaattaaa-cccaataaaagga 187  Q
    ||||||||||||||||||||||||| ||||||| ||| || || |||||||| || ||||||||| ||||||||||||||||| || ||||||||||    
T  1723775 aaagacctaggagcaagatcaaaaggctaaactctaccaagaatattaatgctaaccaaatgaaataactttatgtaattaaatccaaataaaagga 1723679  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 361 - 484
Target Start/End: Complemental strand, 1723603 - 1723479
Alignment:
Q  361 ccttcaagctttacaacatttggatgatcaagtttcctcaaaacaagtatctctcttgccataa-----acttcacactctctggctccaaattatcaaa 455  Q
    |||||||| ||||||||||||||||||||||| |||||||| ||||| |    |||||||||||     ||||||||||||||  |||| ||||||||||    
T  1723603 ccttcaagatttacaacatttggatgatcaagcttcctcaagacaagca----tcttgccataaacttcacttcacactctctaactccgaattatcaaa 1723508  T
Q  456 tctcacttttttcaatgctactatcttcc 484  Q
    ||||||||| || ||||| ||||||||||    
T  1723507 tctcactttctttaatgccactatcttcc 1723479  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 1723658 - 1723611
Alignment:
Q  267 cttaacaccttgaccagcagaaaggccagcaagatcatgttccatata 314  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1723658 cttaacaccttgaccggcagaaaggccagcaagatcatgttccatata 1723611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 230 - 486
Target Start/End: Complemental strand, 1663370 - 1663114
Alignment:
Q  230 aatgaggttaaaattatagtacctgaggttcagtgaacttaacaccttgaccagcagaaaggccagcaagatcatgttccatatattcaaataccaaata 329  Q
    |||||| ||||||||||||||| |||||||  ||||||||||||||||||||| |||| |||| ||| ||| ||||||||||||||||| | || |||||    
T  1663370 aatgagcttaaaattatagtacgtgaggttaggtgaacttaacaccttgaccaacagagaggctagcgagaacatgttccatatattcacacacaaaata 1663271  T
Q  330 aagactacatgacattctagaagtaaccaatccttcaagctttacaacatttggatgatcaagtttcctcaaaacaagtatctctcttgccataaacttc 429  Q
    |||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  1663270 aagactgcatgacattctagaagtaaccaaaccttcaagatttacagcatttggatgatcaagcttcctcaaaacaagcatctctcttgccataaacttc 1663171  T
Q  430 acactctctggctccaaattatcaaatctcacttttttcaatgctactatcttccct 486  Q
    ||||||||| |||||||||||| |||||||||||| |||||||| ||||||||||||    
T  1663170 acactctctagctccaaattataaaatctcactttcttcaatgccactatcttccct 1663114  T

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Target: chr8; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 230 - 488
Target Start/End: Complemental strand, 1747076 - 1746818
Alignment:
Q  230 aatgaggttaaaattatagtacctgaggttcagtgaacttaacaccttgaccagcagaaaggccagcaagatcatgttccatatattcaaataccaaata 329  Q
    |||||| ||||||||||||||| |||||||  ||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||||||| | || |||||    
T  1747076 aatgagcttaaaattatagtacgtgaggttaggtgaacttaacaccttgaccaacagaaaggctagcgagatcgtgttccatatattcacacacaaaata 1746977  T
Q  330 aagactacatgacattctagaagtaaccaatccttcaagctttacaacatttggatgatcaagtttcctcaaaacaagtatctctcttgccataaacttc 429  Q
    |||||| |||||||||||||||||||||||  ||||||| |||||| |||||||||||||||| |||| ||||||||| |||||||||||||||||||||    
T  1746976 aagactgcatgacattctagaagtaaccaaatcttcaagatttacatcatttggatgatcaagcttccccaaaacaagcatctctcttgccataaacttc 1746877  T
Q  430 acactctctggctccaaattatcaaatctcacttttttcaatgctactatcttccctgt 488  Q
    ||||||||| |||||||||||| |||||||||||| |||||||| ||||||||||||||    
T  1746876 acactctctagctccaaattataaaatctcactttcttcaatgccactatcttccctgt 1746818  T

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Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 292 - 482
Target Start/End: Original strand, 40358163 - 40358353
Alignment:
Q  292 ccagcaagatcatgttccatatattcaaataccaaataaagactacatgacattctagaagtaaccaatccttcaagctttacaacatttggatgatcaa 391  Q
    |||||||||||||||||||| || ||||||||||| ||||||||  |||| ||||| ||||||||||| || |||||||||| |||||| || |||||||    
T  40358163 ccagcaagatcatgttccatgtactcaaataccaagtaaagacttgatgatattcttgaagtaaccaaaccctcaagctttataacattggggtgatcaa 40358262  T
Q  392 gtttcctcaaaacaagtatctctcttgccataaacttcacactctctggctccaaattatcaaatctcacttttttcaatgctactatctt 482  Q
    | |||||||||||||| ||||||||||||||||||||||||||||| |  ||||||||||||| ||| ||||| |||||||| ||||||||    
T  40358263 gcttcctcaaaacaagaatctctcttgccataaacttcacactctcagcgtccaaattatcaattctaactttcttcaatgccactatctt 40358353  T

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Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 187
Target Start/End: Complemental strand, 1747250 - 1747091
Alignment:
Q  27 tcatgaaataaatggaaagctaaatatggttagaatagtaaaaagaggtcccaacttcccctagaaaagacctaggagcaagatcaaaagcctaaactat 126  Q
    |||||||||||||||||| | |||||||||||||||||| ||||| || ||||||||| ||||| ||||| ||| |||||| |||||||| ||||||| |    
T  1747250 tcatgaaataaatggaaaaccaaatatggttagaatagt-aaaaggggacccaacttcacctag-aaagagctaagagcaatatcaaaaggctaaactct 1747153  T
Q  127 acaaacaaaattaatgcaaatcaaatgaaacaactttatgtaattaaa-cccaataaaagga 187  Q
    ||||| || |||||| | || ||||||||| ||||| ||||| ||||| || ||||||||||    
T  1747152 acaaagaatattaatactaaccaaatgaaataacttaatgtatttaaatccaaataaaagga 1747091  T

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Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 27 - 187
Target Start/End: Complemental strand, 1663544 - 1663385
Alignment:
Q  27 tcatgaaataaatggaaagctaaatatggttagaatagtaaaaagaggtcccaacttcccctagaaaagacctaggagcaagatcaaaagcctaaactat 126  Q
    |||||||||||||||||| | || ||||||||||||||| ||||| || |||||||||  |||| ||||| ||| |||||| |||||||| ||||||| |    
T  1663544 tcatgaaataaatggaaaaccaagtatggttagaatagt-aaaaggggacccaacttcatctag-aaagagctaagagcaatatcaaaaggctaaactct 1663447  T
Q  127 acaaacaaaattaatgcaaatcaaatgaaacaactttatgtaattaaa-cccaataaaagga 187  Q
    ||||| || |||||| | || ||||||||| ||||| ||||| ||||| || ||||||||||    
T  1663446 acaaagaatattaatactaaccaaatgaaataacttaatgtatttaaatccaaataaaagga 1663385  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 482
Target Start/End: Complemental strand, 36469142 - 36468943
Alignment:
Q  283 gcagaaaggccagcaagatcatgttccatatattcaaataccaaataaagactacatgacattctagaagtaaccaatccttcaagctttacaacatttg 382  Q
    |||| ||| ||||| | ||||||| |||| |||||||| |||| ||| | ||| |||||||||||||| ||||| || ||||| | ||||| |||||| |    
T  36469142 gcagcaagtccagctaaatcatgtaccatgtattcaaacaccagatacaaactccatgacattctagatgtaactaaaccttctaactttataacattgg 36469043  T
Q  383 gatgatcaagtttcctcaaaacaagtatctctcttgccataaacttcacactctctggctccaaattatcaaatctcacttttttcaatgctactatctt 482  Q
    ||||||| | | | | ||  | ||| |||||||| ||||| || || |||||||| || |||||||| |||||||  || || |||||||| || |||||    
T  36469042 gatgatccaatcttcgcagtataaggatctctctagccatgaattttacactctcgggttccaaattgtcaaatcgaaccttcttcaatgcaacaatctt 36468943  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 11523674 - 11523734
Alignment:
Q  55 gttagaatagtaaaaagaggtcccaacttcccctagaaaagacctaggagcaagatcaaaag 116  Q
    ||||||| ||||||||| || | |||||||| |||||||||||||| |||||||||||||||    
T  11523674 gttagaacagtaaaaag-ggactcaacttcctctagaaaagacctaagagcaagatcaaaag 11523734  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 415 - 488
Target Start/End: Complemental strand, 45252032 - 45251959
Alignment:
Q  415 cttgccataaacttcacactctctggctccaaattatcaaatctcacttttttcaatgctactatcttccctgt 488  Q
    |||||||||||| ||||||| |||||||| ||||| |||||||| || || || ||||| ||||||||||||||    
T  45252032 cttgccataaacctcacactttctggctcaaaattgtcaaatctaaccttctttaatgccactatcttccctgt 45251959  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 323
Target Start/End: Original strand, 3252481 - 3252515
Alignment:
Q  289 aggccagcaagatcatgttccatatattcaaatac 323  Q
    ||||||||||||||||||||||| |||||||||||    
T  3252481 aggccagcaagatcatgttccatgtattcaaatac 3252515  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 389
Target Start/End: Complemental strand, 6701042 - 6700945
Alignment:
Q  292 ccagcaagatcatgttccatatattcaaataccaaataaagactacatgacattctagaagtaaccaatccttcaagctttacaacatttggatgatc 389  Q
    ||||| ||||||||| |||| |||||||| || | ||| | ||| |||||||||||||| || || || ||||| || || |||||||| ||||||||    
T  6701042 ccagccagatcatgtgccatgtattcaaacacaagatataaactgcatgacattctagatgtcactaagccttctagtttgacaacattgggatgatc 6700945  T

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