View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3770_low_9 (Length: 439)
Name: NF3770_low_9
Description: NF3770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3770_low_9 |
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| [»] scaffold0095 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Complemental strand, 38816823 - 38816411
Alignment:
| Q |
16 |
cagagaatagaatataacaagagcatcagcagcaacagcttatttgtaacaaatatatgtattctgaattttnnnnnnnnnnnnn----gtggcttgtaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38816823 |
cagagaatagaatataacaagagcatcagcagcaacagcttatttgtaacaaatatatgtattctgaattttaaaaaaaagaaaaaaaagtggcttgtaa |
38816724 |
T |
|
| Q |
112 |
ggaggagattgcctagatattagaagttctatttaggccttatctcacacacaagttttttctaatacatcttctcacacccaacactactgaacttggt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38816723 |
ggaggagattgcctagatattagaagttctatttaggccttatctcacacacaagttttttctaatacatcttctcacacccaacactactgaacttggt |
38816624 |
T |
|
| Q |
212 |
tcatggataatacagcagtctcaactccaccaagccaacttctaaggctctacttaggccttatttctggccaatgtgagactttggtttttccgaatac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38816623 |
tcatggataatacagcagtctcaactccaccaagccaacttctaaggctctacttaggccttatttctggccaatgtgagactttggtttttccgaatac |
38816524 |
T |
|
| Q |
312 |
aaatccactacctctttagagtaaatgtttgacttagtatttgtccatgaagcggtaaatataaaacagtattgcagaggagaacccactcccaaaagat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38816523 |
aaatccactacctctttagagtaaatgtttgacttagtatttgtccatgaagcggtaaatataaaacagtattgcagaggagaacccactcccaaaagat |
38816424 |
T |
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| Q |
412 |
aggggatgtaaag |
424 |
Q |
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||||||||||||| |
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| T |
38816423 |
aggggatgtaaag |
38816411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 258 - 419
Target Start/End: Complemental strand, 39457127 - 39456969
Alignment:
| Q |
258 |
gctctacttaggccttatttctggccaatgtgagactttggtttttccgaatacaaatccactacctctttagagtaaatgtttgacttagtatttgtcc |
357 |
Q |
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||||| |||||||||||||||| |||||| |||||||| ||||||| |||| |||||||||| |||| ||||||||| | || || ||||| ||| |
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| T |
39457127 |
gctcttcttaggccttatttctatccaatg--agactttgatttttcctgatactaatccactacgtcttg-gagtaaatgatagattttgtattcttcc |
39457031 |
T |
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| Q |
358 |
atgaagcggtaaatataaaacagtattgcagaggagaacccactcccaaaagataggggatg |
419 |
Q |
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||||| | ||| |||||| |||| || |||||||||| |||||||||||||||||||||| |
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| T |
39457030 |
atgaattaggaaacataaaatagtactgtagaggagaactcactcccaaaagataggggatg |
39456969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 39464596 - 39464538
Alignment:
| Q |
103 |
ggcttgtaaggaggagattgcctagatattagaagttctatttaggccttatctcacac |
161 |
Q |
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||||||||| | | |||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
39464596 |
ggcttgtaaagtgcagattgcctagacattagaggttctatttaggccttatctcacac |
39464538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 421
Target Start/End: Complemental strand, 39464324 - 39464253
Alignment:
| Q |
350 |
atttgtccatgaagcggtaaatataaaacagtattgcagaggagaacccactcccaaaagataggggatgta |
421 |
Q |
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||||| ||||||| | | ||| |||||||| || || |||| |||||||||||| ||||||||||||||||| |
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| T |
39464324 |
atttgcccatgaaacagcaaacataaaacaatactgtagagaagaacccactcctaaaagataggggatgta |
39464253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 39457370 - 39457312
Alignment:
| Q |
103 |
ggcttgtaaggaggagattgcctagatattagaagttctatttaggccttatctcacac |
161 |
Q |
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|||||| |||| | |||||||||||| | |||||||||| |||||||||||||| |||| |
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| T |
39457370 |
ggcttgcaaggtgaagattgcctagacagtagaagttctgtttaggccttatctaacac |
39457312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 258 - 423
Target Start/End: Original strand, 39406568 - 39406720
Alignment:
| Q |
258 |
gctctacttaggccttatttctggccaatgtgagactttggtttttccgaatacaaatccactacctctttagagtaaatgtttgacttagtatttgtcc |
357 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||||| ||||||| ||||| ||| |||||| || ||||||||||||||||| || | |||||||| |
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| T |
39406568 |
gctctacttaggccttatttctagccaatgtaagactttgatttttcccaatactaattcactacatc-ttagagtaaatgtttgattttgcatttgtcc |
39406666 |
T |
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| Q |
358 |
atgaagcggtaaatataaaacagtattgcagaggagaacccactcccaaaagataggggatgtaaa |
423 |
Q |
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||| |||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
39406667 |
------------ataaaaaacagtattgtagaggagaacccactcccaaaagatatgggatgtaaa |
39406720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 39406398 - 39406455
Alignment:
| Q |
165 |
agttttttctaatacatcttctcacacccaacactactgaacttggttcatggataat |
222 |
Q |
| |
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|||||||| ||||||| || ||||| ||||||||||| |||||||||||||| |||| |
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| T |
39406398 |
agttttttgtaatacacctgctcacgcccaacactaccaaacttggttcatggctaat |
39406455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 103 - 161
Target Start/End: Original strand, 23905 - 23963
Alignment:
| Q |
103 |
ggcttgtaaggaggagattgcctagatattagaagttctatttaggccttatctcacac |
161 |
Q |
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||||||||| | | |||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
23905 |
ggcttgtaaagtgcagattgcctagacattagaggttctatttaggccttatctcacac |
23963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 421
Target Start/End: Original strand, 24177 - 24248
Alignment:
| Q |
350 |
atttgtccatgaagcggtaaatataaaacagtattgcagaggagaacccactcccaaaagataggggatgta |
421 |
Q |
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||||| ||||||| | | ||| |||||||| || || |||| |||||||||||| ||||||||||||||||| |
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| T |
24177 |
atttgcccatgaaacagcaaacataaaacaatactgtagagaagaacccactcctaaaagataggggatgta |
24248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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