View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3771_high_11 (Length: 283)
Name: NF3771_high_11
Description: NF3771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3771_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 53395031 - 53394766
Alignment:
| Q |
1 |
gtgatggaaacggaggaacttaggtaaagctgaaccgcgttgtagagttcgttggtgttaacgccgtcggtttcggttatttcgaagtaacagtaagatg |
100 |
Q |
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| T |
53395031 |
gtgatggaaacggaggaacttaggtaaagctgaaccgcgttgtagagttcgttggtgttaacgccgtcgatttcggttatttcgaagtaacagtaagatg |
53394932 |
T |
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| Q |
101 |
agaaacagttgaagagtttgttgaaaagtttagcggaagcgaaacggagttctggtggaaaaactgtttggaggattgtttgaaagaatgcaaatacacc |
200 |
Q |
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| T |
53394931 |
agaaacagttgaagagtttgttgaaaagtttagcggaagcgaaacggagttctggtggaaaaactgtttggaggattgtttgaaagaatgcaaatacacc |
53394832 |
T |
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| Q |
201 |
aagaattgatgcaagagaagtccaatattctttcattctaatggttttggttttggttttaggaat |
266 |
Q |
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| T |
53394831 |
aagaattgatgcaagagaagtccaatattctttcattttaatggttttggttttggttttaggaat |
53394766 |
T |
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