View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3771_high_12 (Length: 232)
Name: NF3771_high_12
Description: NF3771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3771_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 28 - 214
Target Start/End: Original strand, 2337634 - 2337820
Alignment:
| Q |
28 |
cagagtttgctgtcgcttctagtaataatatccatgggaaaaaagtatacatagatagagtgcaagagaacacaaaaagcaggttgaatgattcaagaat |
127 |
Q |
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| T |
2337634 |
cagagtttgctgtcgcttctagtaataatatccatgggataaaagtatacatagatagagtgcaagagaacacaaaaagcaggttgaatgattcaagaat |
2337733 |
T |
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| Q |
128 |
cactacatcaaatgctattgtgaaacagactcttgaaaatccagtaatgcaaaatcttaatccaagcattgccatgggatctaagaa |
214 |
Q |
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| T |
2337734 |
cactacatcaaatgctattgtgaaacagactcttaaaaatttagcagtgcaaaatcttaatccaagcattgccaagagatctaagaa |
2337820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 2338178 - 2338365
Alignment:
| Q |
28 |
cagagtttgctgtcgcttctagtaataatatccatgggaaaaaagtatacatagatagagtgcaagagaacacaaaaagcaggttgaatgattcaagaat |
127 |
Q |
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| T |
2338178 |
cagagttggccgtcacttctagtaataaaatccctgggaaaaaagaatgcatagatggtgtgcatgagaactcagatagcaggttcggtgagtcgagaat |
2338277 |
T |
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| Q |
128 |
cactacatcaaatgctattgtgaaacagactcttgaaaatccagtaatgcaaaatcttaatccaagcattgccatgggatctaagaat |
215 |
Q |
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| T |
2338278 |
cactacatcaaatgctattgtgaaacagactcttgaaaatccagtaatgcaaaatcttaatccaagcattgccatgggatctaagaat |
2338365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 35 - 215
Target Start/End: Original strand, 44914551 - 44914731
Alignment:
| Q |
35 |
tgctgtcgcttctagtaataatatccatgggaaaaaagtatacatagatagagtgcaagagaacacaaaaagcaggttgaatgattcaagaatcactaca |
134 |
Q |
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| T |
44914551 |
tgctgtcacttctagtaataaaatagatggggaaaaagtccgtatagatagagtgctagagaattcaaaaagcaggctgggtgattcaagaatcactaca |
44914650 |
T |
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| Q |
135 |
tcaaatgctattgtgaaacagactcttgaaaatccagtaatgcaaaatcttaatccaagcattgccatgggatctaagaat |
215 |
Q |
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| T |
44914651 |
tcaaatgctattgtgaaacagactcttgaaaatccagcaatgcagaatcttaatccaagcattgccatgagatcaaagaat |
44914731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 7748251 - 7748438
Alignment:
| Q |
28 |
cagagtttgctgtcgcttctagtaataatatccatgggaaaaaagtatacatagatagagtgcaagagaacacaaaaagcaggttgaatgattcaagaat |
127 |
Q |
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||||||| || ||| |||||||||| || |||||||| |||||||||| |||||||||||| ||||||||| |||| | ||||||| |||||| || | |
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| T |
7748251 |
cagagttagccgtcacttctagtaacaaaatccatggcaaaaaagtatgcatagatagagtacaagagaactcaaacaacaggttgggtgattcgggagt |
7748350 |
T |
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| Q |
128 |
cactacatcaaatgctattgtgaaacagactcttgaaaatccagtaatgcaaaatcttaatccaagcattgccatgggatctaagaat |
215 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||| |||||| |
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| T |
7748351 |
cactacatcaaatgctattgtacaacagactcttgaaaatccagcaatgcaaaatcttaacccaagcattgccatgagatccaagaat |
7748438 |
T |
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