View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3771_high_13 (Length: 223)
Name: NF3771_high_13
Description: NF3771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3771_high_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 20140782 - 20140999
Alignment:
| Q |
6 |
agtgagaagaacaattttctaacaatataacttagtcggttgagtccaaactaagatagatgtcgatatatttatcatggaccacag-cccaaacacaag |
104 |
Q |
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| T |
20140782 |
agtgagaagaacaattttctaacaatataacctagtcggttgagtccaaactaagatagatgttgatatatttatgatggaccacagccccaaacacaag |
20140881 |
T |
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| Q |
105 |
gcatgtaagggcgaagtgcttaatgcaaaaaattgagatnnnnnnnttataatggtccaaatccaattagttatttatgttaggtttgtatcacttgtcg |
204 |
Q |
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| T |
20140882 |
gcatgtaagggcgaagtgcttaatgcaaaaaattgagat-aaaattttataatggtccaaatccaattagttatttatattaggtttgtatcacatgtcg |
20140980 |
T |
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| Q |
205 |
aagaaaattggtgcatttt |
223 |
Q |
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||||||||||||||||||| |
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| T |
20140981 |
aagaaaattggtgcatttt |
20140999 |
T |
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