View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3771_high_2 (Length: 648)
Name: NF3771_high_2
Description: NF3771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3771_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 553
Target Start/End: Original strand, 1429583 - 1430114
Alignment:
| Q |
17 |
accttcctactcatcaccaagacaacatgggtagtaaagaagtacttgtaatgtttcttttttaaagagaccagttatttacttttggct--ttannnnn |
114 |
Q |
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| T |
1429583 |
accttcctactcatcaccaagacaacatgggtagtaaagaaatacttgtaatgtttcttttttaaagagaccagttatttacttttggctcttttttttt |
1429682 |
T |
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| Q |
115 |
nnnnnnnnnnnngtctaaagtgatcttagatgga-taagtnnnnnnntattaatttattttgcaactatagaatatatttactcttccttctttcattgt |
213 |
Q |
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| T |
1429683 |
tcttttttttttgtctaaactgatcttagatggaataagtaaaaaaatattaatttcttttgcaattatatattatatttactcttccttctttcattgt |
1429782 |
T |
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| Q |
214 |
gttttttatcgatataagttctctttgttaaaggtaatcttattgaaacttgaattgattccactatgctgagcattttgcttatatataaacgaaaaca |
313 |
Q |
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| T |
1429783 |
gtttt-tatcgatataagttctctttgttaaaggtaatcttattcaaactttaattcattccactatgctcagcattttggttatatataaacgaaaaca |
1429881 |
T |
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| Q |
314 |
tactaaagtcaaattaaaagaaaaacgtgaggcgcatgggagctgcatgcatgccaaaaaagccccactaaataacaatagtaggtttggtgcatttggt |
413 |
Q |
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| T |
1429882 |
tactaaagtaaaattaaaagaaaaacgtgaggcgcatgggagctgcatgcatgccaaaaaag-cccactaaataacaatagtaggtttggtgcatttggt |
1429980 |
T |
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| Q |
414 |
gtgtgcgcacgatagtcggtgtaccagtaatgtaggaagtttccacgaaattgccttaacatcttttacaacaa-taatattgactcaagaaagatccca |
512 |
Q |
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| T |
1429981 |
gtgtgcgcacgatagtcggtgtaccagtaatgtaggaagtttccacgaaattgccttaacatcttttacaacaacaaatattgactc----aagatccta |
1430076 |
T |
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| Q |
513 |
tcctcatcatcataatttctcttccactatacttcactctc |
553 |
Q |
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| T |
1430077 |
tcc---tcatcatagtttctcttccactatacttcactctc |
1430114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 581 - 641
Target Start/End: Original strand, 1430133 - 1430193
Alignment:
| Q |
581 |
gtctcatcgcaactgatatgcgatccaaatctccttcagataggtttgtgtctctgtgctc |
641 |
Q |
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| T |
1430133 |
gtctcatctcaactgatatgcgatccaaatctccttcagatagatttgtgtctctgtgctc |
1430193 |
T |
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