View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3771_high_4 (Length: 438)

Name: NF3771_high_4
Description: NF3771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3771_high_4
NF3771_high_4
[»] chr1 (4 HSPs)
chr1 (109-420)||(46910480-46910792)
chr1 (9-52)||(46910381-46910424)
chr1 (110-151)||(42843262-42843303)
chr1 (109-146)||(50777346-50777383)
[»] chr8 (1 HSPs)
chr8 (110-149)||(2597080-2597119)
[»] chr7 (4 HSPs)
chr7 (112-151)||(42942297-42942336)
chr7 (112-149)||(8742497-8742534)
chr7 (110-146)||(25614744-25614780)
chr7 (110-170)||(38990213-38990273)
[»] chr6 (2 HSPs)
chr6 (110-149)||(1803981-1804020)
chr6 (109-146)||(6435147-6435184)
[»] chr3 (2 HSPs)
chr3 (110-149)||(54233421-54233460)
chr3 (109-149)||(35756091-35756131)
[»] chr2 (5 HSPs)
chr2 (110-149)||(36582368-36582407)
chr2 (110-149)||(38572051-38572090)
chr2 (112-151)||(42141528-42141567)
chr2 (110-151)||(12192059-12192100)
chr2 (109-149)||(33030022-33030062)
[»] chr4 (1 HSPs)
chr4 (111-149)||(15638243-15638281)
[»] chr5 (1 HSPs)
chr5 (110-151)||(10522887-10522928)
[»] scaffold0049 (1 HSPs)
scaffold0049 (109-149)||(72091-72131)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 109 - 420
Target Start/End: Original strand, 46910480 - 46910792
Alignment:
Q  109 aaccaataagaatagagaaaaacacggttgtcaccaaagttatgtgcaaatatcattgctcaagatggtataatgagagataacgattaagaaagaataa 208  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  46910480 aaccaataagaatagaaaaaaccacggttgtcaccaaagttatgtgcaaatatcattgctcaagatggtataacgagagataacgattaataaagaataa 46910579  T
Q  209 aaggagtattgtttattaggaaggattaataatgaagaannnnnnnccttttgtcttcatatgtgtagtataagcttctacaggcgcaaagcaaatacaa 308  Q
    | |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46910580 atggagtattgtttattaggaaggattaataatgaagaatttttttccttttgtcttcatatgtgtagtataagcttctacaggcgcaaagcaaatacaa 46910679  T
Q  309 aataaattttgtattgataattccaaaagtttgatctagtggt-nnnnnnnngacgtcaaaatttagagatctttggtttgaacacaactagtgttctta 407  Q
    ||||||||||||||||||||||| |||||||||||||||||||         ||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  46910680 aataaattttgtattgataattctaaaagtttgatctagtggtaaaaagagagacgtcaaattttagagatctttggttcgaacacaactagtgttctta 46910779  T
Q  408 gagtgaggtaaat 420  Q
    |||||||||||||    
T  46910780 gagtgaggtaaat 46910792  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 46910381 - 46910424
Alignment:
Q  9 aacaaaggataaaatggtagccagagaaatgatatatgtacaac 52  Q
    ||||||| |||||||| ||| |||||||||||||||||||||||    
T  46910381 aacaaagaataaaatgatagtcagagaaatgatatatgtacaac 46910424  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 151
Target Start/End: Complemental strand, 42843303 - 42843262
Alignment:
Q  110 accaataagaatagagaaaaacacggttgtcaccaaagttat 151  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||    
T  42843303 accaataagaagagagaaaaacaaggttgtcaccaaaattat 42843262  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 50777383 - 50777346
Alignment:
Q  109 aaccaataagaatagagaaaaacacggttgtcaccaaa 146  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  50777383 aaccaataagaagagagaaaaacaaggttgtcaccaaa 50777346  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 2597119 - 2597080
Alignment:
Q  110 accaataagaatagagaaaaacacggttgtcaccaaagtt 149  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  2597119 accaataagaagagagaaaaacaaggttgtcaccaaagtt 2597080  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 42942336 - 42942297
Alignment:
Q  112 caataagaatagagaaaaacacggttgtcaccaaagttat 151  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  42942336 caataagaatagagaaaaacaaggttgtcaccaaaattat 42942297  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 8742497 - 8742534
Alignment:
Q  112 caataagaatagagaaaaacacggttgtcaccaaagtt 149  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  8742497 caataagaagagagaaaaacaaggttgtcaccaaagtt 8742534  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 25614780 - 25614744
Alignment:
Q  110 accaataagaatagagaaaaacacggttgtcaccaaa 146  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  25614780 accaataagaagagagaaaaacaaggttgtcaccaaa 25614744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 38990213 - 38990273
Alignment:
Q  110 accaataagaatagagaaaaacacggttgtcaccaaagttatgtgcaaatatcattgctca 170  Q
    |||||||| |||||||||||||| |||||||| ||||   |||| ||||||||||| ||||    
T  38990213 accaataaaaatagagaaaaacaaggttgtcatcaaatggatgtccaaatatcattcctca 38990273  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 149
Target Start/End: Original strand, 1803981 - 1804020
Alignment:
Q  110 accaataagaatagagaaaaacacggttgtcaccaaagtt 149  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  1803981 accaataagaagagagaaaaacaaggttgtcaccaaagtt 1804020  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 6435147 - 6435184
Alignment:
Q  109 aaccaataagaatagagaaaaacacggttgtcaccaaa 146  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  6435147 aaccaataagaagagagaaaaacaaggttgtcaccaaa 6435184  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 149
Target Start/End: Complemental strand, 54233460 - 54233421
Alignment:
Q  110 accaataagaatagagaaaaacacggttgtcaccaaagtt 149  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  54233460 accaataagaagagagaaaaacaaggttgtcaccaaagtt 54233421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 35756091 - 35756131
Alignment:
Q  109 aaccaataagaatagagaaaaacacggttgtcaccaaagtt 149  Q
    |||||||||||| |||||||||||  |||||||||||||||    
T  35756091 aaccaataagaagagagaaaaacaaagttgtcaccaaagtt 35756131  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 149
Target Start/End: Original strand, 36582368 - 36582407
Alignment:
Q  110 accaataagaatagagaaaaacacggttgtcaccaaagtt 149  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  36582368 accaattagaatagagaaaaacaaggttgtcaccaaagtt 36582407  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 149
Target Start/End: Original strand, 38572051 - 38572090
Alignment:
Q  110 accaataagaatagagaaaaacacggttgtcaccaaagtt 149  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  38572051 accaataagaagagagaaaaacaaggttgtcaccaaagtt 38572090  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 42141567 - 42141528
Alignment:
Q  112 caataagaatagagaaaaacacggttgtcaccaaagttat 151  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  42141567 caataagaatagagaaaaacaaggttgtcaacaaagttat 42141528  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 12192059 - 12192100
Alignment:
Q  110 accaataagaatagagaaaaacacggttgtcaccaaagttat 151  Q
    |||||||| ||||||||||| || ||||||||||||||||||    
T  12192059 accaataaaaatagagaaaagcaaggttgtcaccaaagttat 12192100  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 33030062 - 33030022
Alignment:
Q  109 aaccaataagaatagagaaaaacacggttgtcaccaaagtt 149  Q
    ||||||||| |||||||||||||| |||||||| |||||||    
T  33030062 aaccaataaaaatagagaaaaacaaggttgtcatcaaagtt 33030022  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 15638243 - 15638281
Alignment:
Q  111 ccaataagaatagagaaaaacacggttgtcaccaaagtt 149  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  15638243 ccaataagaagagagaaaaacaaggttgtcaccaaagtt 15638281  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 10522887 - 10522928
Alignment:
Q  110 accaataagaatagagaaaaacacggttgtcaccaaagttat 151  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||    
T  10522887 accaataagaagagagaaaaacaaggttgtcactaaagttat 10522928  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 72131 - 72091
Alignment:
Q  109 aaccaataagaatagagaaaaacacggttgtcaccaaagtt 149  Q
    ||||||||||||| ||||||| || ||||||||||||||||    
T  72131 aaccaataagaattgagaaaaccaaggttgtcaccaaagtt 72091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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