View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3771_high_6 (Length: 392)
Name: NF3771_high_6
Description: NF3771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3771_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 49871081 - 49871443
Alignment:
| Q |
19 |
ggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgttcatttcgcagttgtagaacaatgctttgtctgctgttacacggagggccac |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49871081 |
ggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgttcatttcacagttgtagaacaatgctttgtctgctgttacacggagggccac |
49871180 |
T |
|
| Q |
119 |
tgcttgatgctttgcggcaccggctgagttctcgaatccgacgttaaaggccgtgaaatgggcagagttcacacctgtcaaattaataacaaatcgatca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
49871181 |
tgcttgatgctttgcggcaccggctgagttctcgaatccgacgttaaaggccgtgaaatgggcagagttcacacctgtcaa-ttaataacaaatcgatca |
49871279 |
T |
|
| Q |
219 |
ttacaacttacaacttaggaacagatgctaaatattaaacattgcattagtaacttactgaatgttgcggtattgtaagtctgcacaccatcaccatagc |
318 |
Q |
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| T |
49871280 |
ttacaacttacaacttaggaacagatgctaaatattaatcattgcattagtaacttactgaatgttgcggtattgtaagtctgcacaccatcaccatagc |
49871379 |
T |
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| Q |
319 |
ttttgctaccagtaaatatggtctttttgggaccatcaccaataatagtaacatggtccctatg |
382 |
Q |
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| T |
49871380 |
ttttgctaccagtaaatatggtctttttgggaccatcaccaataatagtaacatggtccctatg |
49871443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 49865144 - 49865511
Alignment:
| Q |
19 |
ggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgttcatttcgcagttgtagaacaatgctttgtctgctgttacacggagggccac |
118 |
Q |
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| T |
49865144 |
ggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgtccatttgacagttgtagaacaatgctttgtctgctgttacacggagggccac |
49865243 |
T |
|
| Q |
119 |
tgcttgatgctttgcggcaccggctgagttctcgaatccgacgttaaaggccgtgaaatgggcagagttcacacctgtcaaattaataacaaatcgatca |
218 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||| | |||||||||||| |||| |
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| T |
49865244 |
tgcttggtgctttgcggcaccggctgagttctcaaatccgacgttcaaggcggtgaaatgggcagagttcacacctg-ccaattaataacaacccgatat |
49865342 |
T |
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| Q |
219 |
ttacaacttacaacttaggaacagatgctaaatattaaacattgcat----------tagtaacttactgaatgttgcggtattgtaagtctgcacacca |
308 |
Q |
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| T |
49865343 |
acacaacttacaa-ttttttagagatcc---atattaaacattgcattaaaattgagtagtaacttaccgaatgttgcggtattgtaagtctgcacacca |
49865438 |
T |
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| Q |
309 |
tcaccatagcttttgctaccagtaaatatggtctttttgggaccatcaccaataatagtaacatggtccctat |
381 |
Q |
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||| ||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
49865439 |
tcagcatagcttttgctgccagtaaatatggtctttgtgggaccatcgccaataatagtaacatggtccctat |
49865511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 13960407 - 13960326
Alignment:
| Q |
46 |
agagtgtatcttggtaaccgttcatttcgcagttgtagaacaatgctttgtctgctgttacacggagggccactgcttgatg |
127 |
Q |
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||||||| |||||||||| | |||| |||||||||||| | |||||||||||||||||| ||||| || ||||||||||| |
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| T |
13960407 |
agagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcggagtgcaactgcttgatg |
13960326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 13967598 - 13967491
Alignment:
| Q |
19 |
ggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgttcatttcgcagttgtagaacaatgctttgtctgctgttacacggagggccac |
118 |
Q |
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|||||||||| | || |||||| ||||||||| |||||| |||||| ||||| ||||||| ||| | ||||| ||||||||||| |||||||| || |
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| T |
13967598 |
ggtagaattgacgttgggattggacgtagagtgtgtcttggaaaccgtccatttgacagttgtggaatattgcttgatctgctgttactcggagggcaac |
13967499 |
T |
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| Q |
119 |
tgcttgat |
126 |
Q |
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|||||||| |
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| T |
13967498 |
tgcttgat |
13967491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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