View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3771_high_8 (Length: 363)
Name: NF3771_high_8
Description: NF3771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3771_high_8 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 2431613 - 2431266
Alignment:
| Q |
16 |
atggaagaaaactacgcgactaatatcaatataaattaaaattgttgaacgcatataccaagaatcccgatgtaataggaaagtgggacatcattgtgct |
115 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2431613 |
atggaagaaaactacgcgattaatatcaatataaattgaaattgttgaacgcatataccaagaatcccgatgtaataggaaagtgggacatcattgtgct |
2431514 |
T |
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| Q |
116 |
caattttgtacattccagttgtagggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtccagattc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2431513 |
caattttgtacattccagttgtagggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtccagattc |
2431414 |
T |
|
| Q |
216 |
tacaactttagacactccaaaacctgtcagtggctgcaattactcgtcagttagtaactacatttattctttgataaaaaataaattctcaatacattcc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2431413 |
tacaactttagacactccaaaacctgtcagtggctgcaattactcgtcagttagtaactacatttattctatgataaaaaataaattctcaatacattcc |
2431314 |
T |
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| Q |
316 |
tttatcaaaatcaactgtgttagcttatactgatatctaatgagagtt |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2431313 |
tttatcaaaatcaactgtgttagcttatactgatatctaatgagagtt |
2431266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 2435003 - 2434714
Alignment:
| Q |
16 |
atggaagaaaactacgcgactaatatcaatataaattaaaattgttgaacgca-----tataccaagaatcccgatgtaataggaaagtgggacatcatt |
110 |
Q |
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||||||||||| | ||||||||||||||||||||||| ||||||||||||| | | |||||||||| ||| | ||||||||||||||||||||||| |
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| T |
2435003 |
atggaagaaaattgcgcgactaatatcaatataaattgaaattgttgaacggaacgcgtgtaccaagaattccggtataataggaaagtgggacatcatt |
2434904 |
T |
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| Q |
111 |
gtgctcaattttgtacattccagttgtagggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtcca |
210 |
Q |
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||||||||||||| | |||||||||||||| |||||||||||||||||||| ||||||| || ||||||| ||||||||||||||||||||||||||||| |
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| T |
2434903 |
gtgctcaattttgaaaattccagttgtaggaaccaaactatactcttcccatttagtaagactccaaactgaatcatctttcttataatctggatgtcca |
2434804 |
T |
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| Q |
211 |
gattctacaactttagacactccaaaacctgtcagtggctgcaattactcgtcagttagtaactacatttattctttgataaaaaataaa |
300 |
Q |
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| T |
2434803 |
gattctacaactttagacactccaaaacctgtcagtggctgcaattactcgtcagttagtagctatatttattctatgataaaaaataaa |
2434714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 2428635 - 2428379
Alignment:
| Q |
16 |
atggaagaaaactacgcgactaatatcaatataaattaaaattgttgaacgcatataccaagaatcccgatgtaataggaaagtgggacatcattgtgct |
115 |
Q |
| |
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|||| |||||||||||||||||| || ||| ||||| ||||||||||| |||| || ||||| || | || ||||||||||||||||| | |||| |
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| T |
2428635 |
atggcagaaaactacgcgactaacattgatacaaattgaaattgttgaatacata--ccgagaattccagtatagtaggaaagtgggacatctgtatgct |
2428538 |
T |
|
| Q |
116 |
caattttgtaca---ttccagttgtagggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtccaga |
212 |
Q |
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|||||||| | | || || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2428537 |
caattttgaaaagtatttgagctgcagggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtccaga |
2428438 |
T |
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| Q |
213 |
ttctacaactttagacactccaaaacctgtcagtggctgcaattactcgtcagttagta |
271 |
Q |
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| T |
2428437 |
ttctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagttagta |
2428379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 1458928 - 1458672
Alignment:
| Q |
16 |
atggaagaaaactacgcgactaatatcaatataaattaaaattgttgaacgcatataccaagaatcccgatgtaataggaaagtgggacatcattgtgct |
115 |
Q |
| |
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|||| |||||||||||||||||| || ||| ||||| ||||||||||| |||| || ||||| || | || ||||||||||||||||| | |||| |
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| T |
1458928 |
atggcagaaaactacgcgactaacattgatacaaattgaaattgttgaatacata--ccgagaattccagtatagtaggaaagtgggacatctgtatgct |
1458831 |
T |
|
| Q |
116 |
caattttgtaca---ttccagttgtagggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtccaga |
212 |
Q |
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|||||||| | | || || || |||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1458830 |
caattttgaaaagtatttgagctgcagggaccaaactatactcttcccatttagtcattccccaaactaaatcatctttcttataatctggatgtccaga |
1458731 |
T |
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| Q |
213 |
ttctacaactttagacactccaaaacctgtcagtggctgcaattactcgtcagttagta |
271 |
Q |
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||||||||||||||||||||| || ||||||| ||||||||||||||| |||||||||| |
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| T |
1458730 |
ttctacaactttagacactcctaatcctgtcaatggctgcaattactcatcagttagta |
1458672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 241
Target Start/End: Original strand, 2498062 - 2498215
Alignment:
| Q |
91 |
taggaaagtgggacatcattgtgctcaattttgtaca---ttccagttgtagggaccaaactatactcttcccagttagtaataccccaaactaaatcat |
187 |
Q |
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|||||||||||||||||| |||||||||||||| | | || || || ||||||||| || ||||||||||| ||| | ||||||||||||||| |
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| T |
2498062 |
taggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaagggaccaagctgtactcttcccatttacagaatccccaaactaaatcac |
2498161 |
T |
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| Q |
188 |
ctttcttataatctggatgtccagattctacaactttagacactccaaaacctg |
241 |
Q |
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||| ||||||||| |||||||| ||||| | ||||||||||| |||||||||| |
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| T |
2498162 |
cttccttataatcaggatgtcctgattcaaggactttagacaccccaaaacctg |
2498215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 2507045 - 2507165
Alignment:
| Q |
138 |
agggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtccagattctacaactttagacactccaaaa |
237 |
Q |
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||||| ||| || ||||||||||| ||||| || ||||| |||| |||| ||| |||||||||| ||||||||||| |||||||||||||| ||| || |
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| T |
2507045 |
agggatcaagctgtactcttcccaattagttatcccccacactatatcaccttccttataatctttgtgtccagattccacaactttagacacaccataa |
2507144 |
T |
|
| Q |
238 |
cctgtcagtggctgcaattac |
258 |
Q |
| |
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|| || | |||||||||||| |
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| T |
2507145 |
ccagttaacggctgcaattac |
2507165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 2517922 - 2518014
Alignment:
| Q |
138 |
agggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtccagattctacaactttagacac |
230 |
Q |
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| T |
2517922 |
agggatcaagctgtactcttcccaattagtaaacccccacactaaatcaccttccttataatctttgtgtccagattccacaactttagacac |
2518014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 258
Target Start/End: Original strand, 2513705 - 2513825
Alignment:
| Q |
138 |
agggaccaaactatactcttcccagttagtaataccccaaactaaatcatctttcttataatctggatgtccagattctacaactttagacactccaaaa |
237 |
Q |
| |
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||||| ||| || ||||||||||| ||||| || ||||| || | |||| ||| ||||||||| ||||||||||||| |||||||||||| ||| || |
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| T |
2513705 |
agggatcaagctgtactcttcccaattagttatcccccacacgatatcaccttctttataatctttgtgtccagattctagaactttagacacaccataa |
2513804 |
T |
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| Q |
238 |
cctgtcagtggctgcaattac |
258 |
Q |
| |
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|| || | |||||||||||| |
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| T |
2513805 |
ccagttatcggctgcaattac |
2513825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 356
Target Start/End: Complemental strand, 2434672 - 2434643
Alignment:
| Q |
327 |
caactgtgttagcttatactgatatctaat |
356 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2434672 |
caactgtgttagcttatactgatatctaat |
2434643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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