View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3771_low_1 (Length: 650)

Name: NF3771_low_1
Description: NF3771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3771_low_1
NF3771_low_1
[»] chr5 (2 HSPs)
chr5 (1-640)||(1427740-1428380)
chr5 (89-196)||(2067534-2067642)
[»] chr3 (9 HSPs)
chr3 (89-197)||(3745484-3745593)
chr3 (92-185)||(12132564-12132661)
chr3 (502-556)||(2441881-2441935)
chr3 (499-545)||(4142279-4142325)
chr3 (341-414)||(2678660-2678733)
chr3 (253-301)||(2686698-2686746)
chr3 (253-301)||(3754223-3754271)
chr3 (253-301)||(4142517-4142565)
chr3 (253-301)||(4158327-4158375)
[»] chr7 (2 HSPs)
chr7 (89-185)||(1078662-1078762)
chr7 (502-552)||(1078313-1078363)


Alignment Details
Target: chr5 (Bit Score: 593; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 1 - 640
Target Start/End: Complemental strand, 1428380 - 1427740
Alignment:
Q  1 accaacataaccagtaatgtctcacagtttgagattatacccgcctattttggagattatattcggtttgatctgaattgcttcataattggctcttgca 100  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1428380 accaacataaccagtaacgtctcacagtttgagattatacccacctattttggagattatcttcggtttgatctgaattgcttcataattggctcttgca 1428281  T
Q  101 atggcatcctttgtattgcaaacgattctaaagacttatttatattgtgaaacc-taccattagaaaattcagggagttgccccttttaaaaaagccaca 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1428280 atggcatcctttgtattgcaaacgattctaaagacttatttatattgtggaaccctaccattagaaaattcagggagttgccccttttaaaaaagccaca 1428181  T
Q  200 agagtttagtcacaagtacagtcaattttgcataaagccgcaaacagaatttagcttcggctatgattgtttaagggataattacaaggtgattgttgtt 299  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1428180 agagtttagtcacaagtacaggcaattttgcataaagccgcaaacagaatttagcttcggctatgattgtttaacggataattacaaggtgattgttgtt 1428081  T
Q  300 ctcaagtaccataagtcgataggtaggtgggttaacaaaattgaattaaaacttcatactttaggtactaatttttggagaagcattaagaagttccctt 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1428080 ctcaagtaccataagtcgataggtaggtgggttaacaaaattgaattaaaacttcatactttaggtactaatttttggagaagcattaagaagttccctt 1427981  T
Q  400 ttggtgttctcccttatgacatgtcgggaaaactcgtgagtggaaaatttgttggcggcgcaatcaatttgttggcctttaaaccttatccgaggacttc 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  1427980 ttggtgttctcccttatgacatgtcgggaaaactcgtgagtggaaaatttgttggcggcgcaatcagttggttggcctttaaaccttatccgaggacttc 1427881  T
Q  500 atgctttattgttgcttttgatttggggaaggagtcttagcaaaaggttttgcttccaaatcgtggaggagtggatgtgagtggcttctcgaccttgggt 599  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1427880 atgctttattgttgcttttgatttggggaaggagtcttatcaaaaggttttgcttccaaatcgtggaggagtagatgtgagtggcttctcgaccttgggt 1427781  T
Q  600 gttctaaggggtttcttgtccttgtcttatggtgatgatgt 640  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1427780 gttctaaggggtttcttgtccttgtcttatggtgatgatgt 1427740  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 2067642 - 2067534
Alignment:
Q  89 ttggctcttgcaatggcatcctttgtattgcaaacgattctaaagacttatttatattgtg-aaacctaccattagaaaattcagggagttgcccctttt 187  Q
    |||||||||||||||||||| |||||||||| ||| ||| || || |||| |||||||||| || ||| | ||||||| | ||| ||||||||| |||||    
T  2067642 ttggctcttgcaatggcatcatttgtattgccaaccattatacaggcttagttatattgtgtaacccttctattagaacaatcaaggagttgccactttt 2067543  T
Q  188 aaaaaagcc 196  Q
      |||||||    
T  2067542 tgaaaagcc 2067534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 197
Target Start/End: Original strand, 3745484 - 3745593
Alignment:
Q  89 ttggctcttgcaatggcatcctttgtattgcaaacgattctaaagacttatttatattgt-gaaacctaccattagaaaattcagggagttgcccctttt 187  Q
    ||||||||||||| |||||||||||||||||| | |||| ||||| |||  ||||| ||| ||| ||  | ||||||||||||| |||||||||||||||    
T  3745484 ttggctcttgcaacggcatcctttgtattgcagatgattataaaggcttggttatactgtggaacccctctattagaaaattcaaggagttgcccctttt 3745583  T
Q  188 aaaaaagcca 197  Q
      ||||||||    
T  3745584 tcaaaagcca 3745593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 12132564 - 12132661
Alignment:
Q  92 gctcttgcaatggcatcctttgtattgcaaacg---attctaaagacttatttatattg-tgaaacctaccattagaaaattcagggagttgcccctt 185  Q
    ||||||||||||||||||||||||||||| |||   ||   |||| |||  |||||||| |||| ||| ||||||||||||||| |||||||||||||    
T  12132564 gctcttgcaatggcatcctttgtattgcagacgccaatgacaaaggcttgattatattgttgaacccttccattagaaaattcaaggagttgcccctt 12132661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 502 - 556
Target Start/End: Original strand, 2441881 - 2441935
Alignment:
Q  502 gctttattgttgcttttgatttggggaaggagtcttagcaaaaggttttgcttcc 556  Q
    |||||||| || |||||||||||| ||| |||||||| |||||||| ||||||||    
T  2441881 gctttattatttcttttgatttggagaaagagtcttatcaaaaggtattgcttcc 2441935  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 499 - 545
Target Start/End: Complemental strand, 4142325 - 4142279
Alignment:
Q  499 catgctttattgttgcttttgatttggggaaggagtcttagcaaaag 545  Q
    |||||||||||||| ||||||||||||  ||||||||||| ||||||    
T  4142325 catgctttattgtttcttttgatttggcaaaggagtcttatcaaaag 4142279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 414
Target Start/End: Complemental strand, 2678733 - 2678660
Alignment:
Q  341 tgaattaaaacttcatactttaggtactaatttttggagaagcattaagaagttcccttttggtgttctccctt 414  Q
    |||| ||||| |||||||||| ||| ||||| ||||||||| |||| |  |||| |||||||||||| ||||||    
T  2678733 tgaagtaaaagttcatactttgggttctaatatttggagaaacattcaagagtttccttttggtgttttccctt 2678660  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 2686746 - 2686698
Alignment:
Q  253 gcttcggctatgattgtttaagggataattacaaggtgattgttgttct 301  Q
    |||||||||| |||| ||| | ||| |||||||||||||||||||||||    
T  2686746 gcttcggctacgattcttttaaggagaattacaaggtgattgttgttct 2686698  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 301
Target Start/End: Original strand, 3754223 - 3754271
Alignment:
Q  253 gcttcggctatgattgtttaagggataattacaaggtgattgttgttct 301  Q
    |||| |||||||||| |||||  ||||||||||||||| ||||||||||    
T  3754223 gctttggctatgattctttaaacgataattacaaggtggttgttgttct 3754271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 4142565 - 4142517
Alignment:
Q  253 gcttcggctatgattgtttaagggataattacaaggtgattgttgttct 301  Q
    |||| |||||||||| || || |||||||||||||||| ||||||||||    
T  4142565 gctttggctatgattcttcaaaggataattacaaggtggttgttgttct 4142517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 301
Target Start/End: Complemental strand, 4158375 - 4158327
Alignment:
Q  253 gcttcggctatgattgtttaagggataattacaaggtgattgttgttct 301  Q
    |||| |||||||||| || || |||||||||||||||| ||||||||||    
T  4158375 gctttggctatgattcttcaaaggataattacaaggtggttgttgttct 4158327  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 1078762 - 1078662
Alignment:
Q  89 ttggctcttgcaatggcatcctttgtattgca---aacgattctaaagacttatttatattg-tgaaacctaccattagaaaattcagggagttgcccct 184  Q
    ||||||||||||||||||||||||||||||||    || ||   |||| |||| |||||||| |||| ||| ||||||||||||||| ||||||||||||    
T  1078762 ttggctcttgcaatggcatcctttgtattgcagatgacaatgacaaaggcttagttatattgttgaacccttccattagaaaattcaaggagttgcccct 1078663  T
Q  185 t 185  Q
    |    
T  1078662 t 1078662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 502 - 552
Target Start/End: Complemental strand, 1078363 - 1078313
Alignment:
Q  502 gctttattgttgcttttgatttggggaaggagtcttagcaaaaggttttgc 552  Q
    ||||||||||| ||||||||||||| || || ||||| |||||||||||||    
T  1078363 gctttattgtttcttttgatttgggaaaagaatcttatcaaaaggttttgc 1078313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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