View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3771_low_11 (Length: 330)
Name: NF3771_low_11
Description: NF3771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3771_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 317
Target Start/End: Complemental strand, 40207965 - 40207664
Alignment:
| Q |
16 |
atgaacaacatccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggcagtgtagtaagtaacccaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40207965 |
atgaacaacatccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggcagtgtagtaagtaacccaa |
40207866 |
T |
|
| Q |
116 |
gcaaagagaatcataacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacat |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40207865 |
gcaaagagaatcatgacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacat |
40207766 |
T |
|
| Q |
216 |
gtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttgggtcgagtatgcaaacaaaataaaagacaatacttaattaccggt |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40207765 |
gtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttgggtcgagtatgcaaacaaaataaaagtcaatacttaattaccggt |
40207666 |
T |
|
| Q |
316 |
tc |
317 |
Q |
| |
|
|| |
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|
| T |
40207665 |
tc |
40207664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 40199646 - 40199384
Alignment:
| Q |
16 |
atgaacaacatccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggcagtgtagtaagtaacccaa |
115 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||| |
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| T |
40199646 |
atgaacagcatccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcgcatagaagaatggaagtgtagtaagtaacccaa |
40199547 |
T |
|
| Q |
116 |
gcaaagagaatcataacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacat |
215 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40199546 |
gcaaagagaatcatgacaataggaccagcaatccatccaagttgagcaatagcccaagatagagacagcactccagaccctaccacagctgttattacat |
40199447 |
T |
|
| Q |
216 |
gtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttgggtcgagt |
278 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| |||| ||||| |||||||||||||| |
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| T |
40199446 |
gtgcacttgcagtccaagcagttcctgtgtttttcataaaacctattaaaatttgggtcgagt |
40199384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 40203809 - 40203555
Alignment:
| Q |
16 |
atgaacaacatccatgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggcagtgtagtaagtaacccaa |
115 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||| || || |||||||||||| |
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| T |
40203809 |
atgaacaacatccatgtaagtatagtttctcttgccactgataggatcaccagtacgataacattcacagagaagaatggaggtataataagtaacccaa |
40203710 |
T |
|
| Q |
116 |
gcaaagagaatcataacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
40203709 |
gcaaagagaatcataacaataggaccagcaatccatccaagttgagcaatagcccaagctagagacagcactccagaccctatcacagctgttattacat |
40203610 |
T |
|
| Q |
216 |
gtgcacttgcagtccaaacagttcctgtgtttttcaagaaacatattagaatttg |
270 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
40203609 |
gtgcacttgcagtccaagcagttcctgtgtttttcaagaaacatattagaatttg |
40203555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 231
Target Start/End: Original strand, 10299650 - 10299851
Alignment:
| Q |
30 |
tgtaagtgtagtttctcttgccattgataggatcatcattacgataacattcacaaagaagaatggcagtgtagtaagtaacccaagcaaagagaatcat |
129 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||| | |||||||||| || |||||||| ||| |||||||||||||| | | || |||| ||| |
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|
| T |
10299650 |
tgtaagtgtagtttcttttgccattgagttgatcaccggtacgataacaaacagaaagaagagtggaggtgtagtaagtaacaaacgagaaaagaagcat |
10299749 |
T |
|
| Q |
130 |
aacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtc |
229 |
Q |
| |
|
| || |||||||||||||| ||||| ||||||||||| || | |||||| |||||||| || | ||||||||| |||| ||||||||||| ||| |
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| T |
10299750 |
cattgatggtccagcaatccatccaagttgtgcaatagcccatgccaaagacagcactccagaaccaatcacagctgtgattatgtgtgcacttgctgtc |
10299849 |
T |
|
| Q |
230 |
ca |
231 |
Q |
| |
|
|| |
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|
| T |
10299850 |
ca |
10299851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 242
Target Start/End: Original strand, 39429174 - 39429280
Alignment:
| Q |
136 |
aggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtccaaaca |
235 |
Q |
| |
|
||||||||||||||| || || |||||||| |||||||||| ||||| || || || |||| ||||||||||| | |||| ||||| ||||||||| |
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|
| T |
39429174 |
aggaccagcaatccaacctagctgagcaatggcccaagctaaagacaacacccctgatcctataacagctgttataatgtgtgagcttgcggtccaaaca |
39429273 |
T |
|
| Q |
236 |
gttcctg |
242 |
Q |
| |
|
|||||| |
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|
| T |
39429274 |
cttcctg |
39429280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 240
Target Start/End: Complemental strand, 6249434 - 6249330
Alignment:
| Q |
136 |
aggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgcagtccaaaca |
235 |
Q |
| |
|
||||||||||| ||| || || ||||| || |||||||||| ||||| || || || |||| |||||||||||||| |||| | |||||||| ||||| |
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| T |
6249434 |
aggaccagcaacccaacctagctgagctatggcccaagctaaagacaacacccctgatcctatcacagctgttattatgtgtgaaattgcagtcaaaaca |
6249335 |
T |
|
| Q |
236 |
gttcc |
240 |
Q |
| |
|
|||| |
|
|
| T |
6249334 |
cttcc |
6249330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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