View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3771_low_3 (Length: 449)
Name: NF3771_low_3
Description: NF3771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3771_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 431
Target Start/End: Complemental strand, 47539242 - 47538821
Alignment:
| Q |
10 |
attcgtgcttttcttcaaatcatttttcccgctaacaatagtaatgtttctaaaaccaacttggttacaacgaccaaattggaaagggatgctaattatg |
109 |
Q |
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| T |
47539242 |
attcgtgcttttcttcaaatcatttttcccactaacaatagtaatgttagtaaaaccaacttggttacaacgaccaagttggaaaaggatgctaattatg |
47539143 |
T |
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| Q |
110 |
ggaaggaagacctcaagaaagttttttcgacttttgacaagaatggtgatggattcataacgaagcaagagttgaaggaatcactaaggaacataagaat |
209 |
Q |
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| T |
47539142 |
ggaaggaagaactcaaaaaagtgttttcgactttcgacaagaatggtgatggattcataacaaagcaagagttgaaggaatcattaaggaacataagaat |
47539043 |
T |
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| Q |
210 |
cttcatggacgagaaagagattgatgatattgttggcaagtttgattctaatggagatgagttgattgactttgatgagttttgtttgttgactagtgag |
309 |
Q |
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| T |
47539042 |
cttcatggatgagaaagagattgatgatattgttggcaagtttgattctaatggagatgagttgattgattttgatgagttttgtttgttgactagtgag |
47538943 |
T |
|
| Q |
310 |
tttatgggagggggtgaaggagagaaagaaggtggtgttggtagtaaggaagatgaattggaagaattagaggctaatttaaaggaggcttttgatgtgt |
409 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47538942 |
tttatgggaggaggtgaaggagagaaagaaggtggtgttggtagtaaggaagatgaattggaagaattagaggctaatttaaaggaggcttttgatgtgt |
47538843 |
T |
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| Q |
410 |
ttgacaaagataatgatgggtt |
431 |
Q |
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| T |
47538842 |
ttgacaaagataatgatgggtt |
47538821 |
T |
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