View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3771_low_6 (Length: 416)

Name: NF3771_low_6
Description: NF3771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3771_low_6
NF3771_low_6
[»] chr4 (11 HSPs)
chr4 (251-401)||(32689885-32690035)
chr4 (61-185)||(32690101-32690225)
chr4 (61-165)||(54854157-54854261)
chr4 (62-165)||(49039424-49039527)
chr4 (61-171)||(12585537-12585647)
chr4 (72-165)||(1589147-1589239)
chr4 (61-167)||(9062187-9062296)
chr4 (76-180)||(6202601-6202705)
chr4 (62-123)||(33359872-33359933)
chr4 (94-123)||(50815762-50815791)
chr4 (64-123)||(10098180-10098237)
[»] chr6 (6 HSPs)
chr6 (73-165)||(30833030-30833122)
chr6 (59-184)||(30668160-30668285)
chr6 (72-165)||(8309177-8309271)
chr6 (64-165)||(10455755-10455857)
chr6 (61-123)||(26669637-26669699)
chr6 (72-171)||(22730690-22730790)
[»] chr3 (10 HSPs)
chr3 (90-165)||(34407097-34407172)
chr3 (61-185)||(24160506-24160630)
chr3 (61-164)||(16999942-17000045)
chr3 (77-184)||(28951860-28951967)
chr3 (62-181)||(42665904-42666023)
chr3 (71-165)||(51017803-51017896)
chr3 (61-171)||(24130566-24130676)
chr3 (61-163)||(40160750-40160852)
chr3 (76-165)||(23237375-23237464)
chr3 (64-152)||(36331709-36331795)
[»] chr1 (17 HSPs)
chr1 (75-165)||(9768801-9768891)
chr1 (72-164)||(43020625-43020717)
chr1 (72-171)||(2903016-2903115)
chr1 (72-165)||(3341725-3341818)
chr1 (72-165)||(9769569-9769662)
chr1 (74-155)||(11238019-11238100)
chr1 (72-165)||(42908784-42908877)
chr1 (61-153)||(23973460-23973552)
chr1 (72-123)||(9976373-9976424)
chr1 (61-116)||(13941381-13941436)
chr1 (90-165)||(16182822-16182897)
chr1 (64-171)||(18179335-18179442)
chr1 (72-179)||(41677059-41677166)
chr1 (61-123)||(33844672-33844734)
chr1 (61-123)||(33949244-33949306)
chr1 (73-123)||(48260179-48260229)
chr1 (61-121)||(50859347-50859405)
[»] chr2 (7 HSPs)
chr2 (64-165)||(1244582-1244683)
chr2 (64-185)||(39118386-39118507)
chr2 (61-165)||(34107287-34107391)
chr2 (72-171)||(40471160-40471259)
chr2 (61-171)||(39334859-39334969)
chr2 (61-122)||(42507344-42507405)
chr2 (94-142)||(25783225-25783273)
[»] chr8 (7 HSPs)
chr8 (61-165)||(220340-220444)
chr8 (61-165)||(689495-689599)
chr8 (61-165)||(733963-734067)
chr8 (61-165)||(857859-857963)
chr8 (62-123)||(12926457-12926518)
chr8 (72-165)||(14011027-14011120)
chr8 (64-123)||(4798524-4798581)
[»] chr7 (4 HSPs)
chr7 (61-165)||(10020447-10020551)
chr7 (61-164)||(32309126-32309229)
chr7 (99-171)||(23799307-23799379)
chr7 (97-165)||(32814840-32814908)
[»] chr5 (6 HSPs)
chr5 (72-160)||(31556836-31556924)
chr5 (73-165)||(10106643-10106735)
chr5 (65-155)||(41539337-41539427)
chr5 (90-123)||(22396995-22397028)
chr5 (61-122)||(37986845-37986906)
chr5 (72-152)||(13862151-13862230)
[»] scaffold0119 (1 HSPs)
scaffold0119 (61-123)||(1094-1156)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 251 - 401
Target Start/End: Complemental strand, 32690035 - 32689885
Alignment:
Q  251 aagtaagtagttaagaaacacaaaattcattaactcgaggtattgtttgaaggaatgacatgagaattacttagccgaatcgctcgtctaacttttcagt 350  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32690035 aagtaagtagttaagaaacagaaaattcattaactcgaggtaatgttagaaggaatgacatgagaattacttagccgaatcgctcgtctaacttttcagt 32689936  T
Q  351 tcgacaacaaatttgacatactagcgtatacatttatgcatttgtaaaagt 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32689935 tcgacaacaaatttgacatactagcgtatacatttatgcatttgtaaaagt 32689885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 61 - 185
Target Start/End: Complemental strand, 32690225 - 32690101
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgc 160  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| | ||||||||||  |||||| |||| ||||||||||    
T  32690225 caagtagtctggtggctagaattctcttctttcaagatgaataagtggggtgttcggggttcgaactctaacccctatatatcataatgtatgtcactgc 32690126  T
Q  161 caactaagttacactcacgaagaca 185  Q
    ||||| |||||| ||||||| ||||    
T  32690125 caactgagttacgctcacgaggaca 32690101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 54854157 - 54854261
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgc 160  Q
    |||||||||| ||||||||||||| ||| ||||||| |||||| ||| | ||||||||||||| |  | | ||||||||||| |  ||||||||| ||||    
T  54854157 caagtagtctagtggctagaattcacttttttcaaggtgaataagtgtgatgtccggggttcgaaccccagcccctgcatataattatgcatgtccctgc 54854256  T
Q  161 caact 165  Q
    |||||    
T  54854257 caact 54854261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 165
Target Start/End: Original strand, 49039424 - 49039527
Alignment:
Q  62 aagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgcc 161  Q
    |||||| || ||||||||||||| | | ||||||| |||||| ||||||||||||||||||| |  | |  |||||||||| | |||||||||| |||||    
T  49039424 aagtagcctagtggctagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccagtccctgcatataacaatgcatgtccctgcc 49039523  T
Q  162 aact 165  Q
    ||||    
T  49039524 aact 49039527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 12585537 - 12585647
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgc 160  Q
    |||||||||| ||||||||||||| | | |||||||||||||| ||| ||||| ||||||||| | ||   ||| | ||||| | |||||||||| ||||    
T  12585537 caagtagtctagtggctagaattcacctttttcaagatgaataagtgaggtgttcggggttcgaactccggcccttacatataacaatgcatgtccctgc 12585636  T
Q  161 caactaagtta 171  Q
    ||||| |||||    
T  12585637 caactgagtta 12585647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 1589147 - 1589239
Alignment:
Q  72 gtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaact 165  Q
    ||||||||||||| | | ||| ||||||||||  |||| ||||||||||||| |  || |||||||||||| | |||||||||||| |||||||    
T  1589147 gtggctagaattcaccttttt-aagatgaataaatgggatgtccggggttcgaatcctgacccctgcatataacaatgcatgtcaccgccaact 1589239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 9062296 - 9062187
Alignment:
Q  61 caagtagtctggtggctagaattc-tcttctttcaagatgaatatgtggg-gtgtccgggg-ttcgtagtctaacccctgcatatcagaatgcatgtcac 157  Q
    |||||||| ||||||||||||||| |||| ||| ||| |||||| ||||| |||||||||| |||| |  | ||||| ||||||| | |||||||||| |    
T  9062296 caagtagtatggtggctagaattcatctttttttaaggtgaataagtgggtgtgtccgggggttcgaaccccaacccttgcatataataatgcatgtccc 9062197  T
Q  158 tgccaactaa 167  Q
    ||||||||||    
T  9062196 tgccaactaa 9062187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 6202705 - 6202601
Alignment:
Q  76 ctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaactaagttacact 175  Q
    ||||||||| | | |||||||||||||| || |||||||||||||||| |  ||| ||||| ||||  | || ||||||| ||||||||| |||||  ||    
T  6202705 ctagaattcacctttttcaagatgaataagtagggtgtccggggttcgaaccctagcccctacataaaacaaagcatgtcgctgccaactgagttaagct 6202606  T
Q  176 cacga 180  Q
    |||||    
T  6202605 cacga 6202601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 33359933 - 33359872
Alignment:
Q  62 aagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcg 123  Q
    |||||| || ||||||||||||| | | ||||||| |||||| ||||||||||| |||||||    
T  33359933 aagtagcctagtggctagaattcacctttttcaaggtgaataagtggggtgtccagggttcg 33359872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 123
Target Start/End: Complemental strand, 50815791 - 50815762
Alignment:
Q  94 aagatgaatatgtggggtgtccggggttcg 123  Q
    ||||||||||||||||||||||||||||||    
T  50815791 aagatgaatatgtggggtgtccggggttcg 50815762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 10098237 - 10098180
Alignment:
Q  64 gtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcg 123  Q
    ||||||| |||||||||||||   ||||  |||||||||| |||||||||||||||||||    
T  10098237 gtagtctagtggctagaattca--tcttataagatgaataagtggggtgtccggggttcg 10098180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 165
Target Start/End: Complemental strand, 30833122 - 30833030
Alignment:
Q  73 tggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaact 165  Q
    |||||||||||||| | |||||||  ||||| ||||||||||||||||||| |  |  |||||||||||| | |||||||||| |||||||||    
T  30833122 tggctagaattctcctttttcaaggagaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtccctgccaact 30833030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 184
Target Start/End: Original strand, 30668160 - 30668285
Alignment:
Q  59 gacaagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcact 158  Q
    |||||||||||| ||| ||| ||||| | | ||| ||| |||||| ||||||||| || |||||| | ||| |||||||||||| | ||||||||||  |    
T  30668160 gacaagtagtctagtgactataattcacattttttaaggtgaataagtggggtgttcgtggttcgaactctgacccctgcatataataatgcatgtctat 30668259  T
Q  159 gccaactaagttacactcacgaagac 184  Q
    ||||||| |||||  |||||| ||||    
T  30668260 gccaactgagttatgctcacggagac 30668285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 165
Target Start/End: Complemental strand, 8309271 - 8309177
Alignment:
Q  72 gtggctagaattctc-ttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaact 165  Q
    ||||||||||||| | || ||||||| |||||| ||||||||||||||||||| |   |  ||| ||||||| | |||||||||| |||||||||    
T  8309271 gtggctagaattcaccttttttcaaggtgaataggtggggtgtccggggttcgaaacttggcccatgcatataacaatgcatgtccctgccaact 8309177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 165
Target Start/End: Complemental strand, 10455857 - 10455755
Alignment:
Q  64 gtagtctggtggctagaattctcttctttcaagatgaatatgt-ggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgcca 162  Q
    ||||||| |||| |||||||||||| |||||||  ||||| || ||||||||||||||||| |  |   ||||||||||| | |||||||||  ||||||    
T  10455857 gtagtctagtggttagaattctcttttttcaaggagaataagtgggggtgtccggggttcgaaccccggcccctgcatataacaatgcatgttcctgcca 10455758  T
Q  163 act 165  Q
    |||    
T  10455757 act 10455755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 26669637 - 26669699
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcg 123  Q
    |||||||| | ||||||||||||| | | ||||||| |||||| |||||||||| ||||||||    
T  26669637 caagtagtttagtggctagaattcacctttttcaaggtgaataagtggggtgtctggggttcg 26669699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 22730690 - 22730790
Alignment:
Q  72 gtggctagaattctc-ttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaactaagtt 170  Q
    ||||||||||||| | || ||| ||| |||||| |||||||||||| |||||| | |  |  |||||||||| | |||||||||| ||||||||| ||||    
T  22730690 gtggctagaattcaccttattttaaggtgaataagtggggtgtccgaggttcgaacttcagtccctgcatataacaatgcatgtctctgccaactgagtt 22730789  T
Q  171 a 171  Q
    |    
T  22730790 a 22730790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 165
Target Start/End: Original strand, 34407097 - 34407172
Alignment:
Q  90 tttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaact 165  Q
    |||||||||||||| |||||||||| |||||||| |  | ||||||||||||| | |||||||||| |||||||||    
T  34407097 tttcaagatgaataagtggggtgtctggggttcgaaccccaacccctgcatataataatgcatgtccctgccaact 34407172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 24160506 - 24160630
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgc 160  Q
    ||||||||||||||||||||||||   | ||| ||  |||||| |||| |||||||||||||| |  |  |||||||||||| | | |||||||| ||||    
T  24160506 caagtagtctggtggctagaattcaactttttgaaagtgaataagtggagtgtccggggttcgaaccccgacccctgcatataacagtgcatgtctctgc 24160605  T
Q  161 caactaagttacactcacgaagaca 185  Q
    ||||| |||||  ||||||| ||||    
T  24160606 caactgagttatgctcacgaggaca 24160630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 164
Target Start/End: Complemental strand, 17000045 - 16999942
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgc 160  Q
    |||||||||| ||||||| ||||| |   ||||||||||||||||||||||||| || ||||| | ||   ||||| ||||| | |||||||||| ||||    
T  17000045 caagtagtcttgtggctacaattcacccttttcaagatgaatatgtggggtgtctggagttcgaactccggcccctacatataataatgcatgtccctgc 16999946  T
Q  161 caac 164  Q
    ||||    
T  16999945 caac 16999942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 28951967 - 28951860
Alignment:
Q  77 tagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaactaagttacactc 176  Q
    |||||||| | | ||||||| |||||| ||||||||| ||||||||| |  || |||||||||||| | |||||||||  ||||||||| |||||  |||    
T  28951967 tagaattcacatttttcaaggtgaataagtggggtgttcggggttcgaaccctgacccctgcatataataatgcatgtatctgccaactgagttatgctc 28951868  T
Q  177 acgaagac 184  Q
    ||| ||||    
T  28951867 acggagac 28951860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 181
Target Start/End: Original strand, 42665904 - 42666023
Alignment:
Q  62 aagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgcc 161  Q
    ||||||||| |||  ||||||||  || ||||||| |||||| ||||||||||||| ||||| | ||  |||||||||| | | ||||||| ||  ||||    
T  42665904 aagtagtctagtgattagaattcatttttttcaaggtgaataagtggggtgtccggagttcgaactccgacccctgcatttaacaatgcatatccatgcc 42666003  T
Q  162 aactaagttacactcacgaa 181  Q
    ||||||||||  ||||||||    
T  42666004 aactaagttaagctcacgaa 42666023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 51017896 - 51017803
Alignment:
Q  71 ggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaact 165  Q
    |||||||||||||| ||| ||||||  |||||| ||||||||||| ||||||| | ||  || ||||||||| | |||||||||| |||||||||    
T  51017896 ggtggctagaattcacttttttcaaagtgaataagtggggtgtcc-gggttcgaactccgactcctgcatataacaatgcatgtccctgccaact 51017803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 24130676 - 24130566
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgc 160  Q
    |||||||||| |||||||| ||||   | ||||||| |||||| ||||||||||||||||||  |  |   ||||||||||| | |||| ||||| ||||    
T  24130676 caagtagtctagtggctagtattcaactttttcaaggtgaataagtggggtgtccggggttcaaaccccgtcccctgcatataacaatgtatgtccctgc 24130577  T
Q  161 caactaagtta 171  Q
    ||||| |||||    
T  24130576 caactgagtta 24130566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 163
Target Start/End: Complemental strand, 40160852 - 40160750
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgc 160  Q
    ||||||| || ||||||||||||| | | ||| ||| |||||| ||||||||||||||||||  |  | | |||| |||||| | |||||||||| ||||    
T  40160852 caagtagcctagtggctagaattcacctttttaaaggtgaataagtggggtgtccggggttcaaaccccagccccggcatataacaatgcatgtccctgc 40160753  T
Q  161 caa 163  Q
    |||    
T  40160752 caa 40160750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 165
Target Start/End: Complemental strand, 23237464 - 23237375
Alignment:
Q  76 ctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaact 165  Q
    ||||||||| | | ||||||  |||||||||||| ||||||| ||||| | ||  |||||| ||||| | |||||||||| |||||||||    
T  23237464 ctagaattcacctttttcaacgtgaatatgtgggatgtccggagttcgaactccgacccctacatataataatgcatgtccctgccaact 23237375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 36331709 - 36331795
Alignment:
Q  64 gtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcat 152  Q
    ||||||| ||||||||||||| ||| ||| ||| |||||| ||||||||||||||||||| |  |  |||||||||||| | |||||||    
T  36331709 gtagtctagtggctagaattcactt-tttaaag-tgaataagtggggtgtccggggttcgaaccccgacccctgcatataataatgcat 36331795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 9768801 - 9768891
Alignment:
Q  75 gctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaact 165  Q
    |||||||||| | | ||||||| |||||| ||||||||||||||||||| |  |  |||||||||||| | |||||||||| |||||||||    
T  9768801 gctagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtccctgccaact 9768891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 43020717 - 43020625
Alignment:
Q  72 gtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaac 164  Q
    ||||||||||||| | | ||||||| |||||  |||||||||||| |||||| |  | ||||||||||||| | |||||||||| ||||||||    
T  43020717 gtggctagaattcacatttttcaaggtgaatgagtggggtgtccgaggttcgaaccccaacccctgcatataataatgcatgtccctgccaac 43020625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 2903016 - 2903115
Alignment:
Q  72 gtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaactaagtta 171  Q
    ||||||||||||||| | ||||||| |||||| ||||||||| ||||||||| |  |  ||| |||||||| | |||||||||| ||| ||||| |||||    
T  2903016 gtggctagaattctcctttttcaaggtgaataagtggggtgttcggggttcgaaccccgacctctgcatataacaatgcatgtccctggcaactgagtta 2903115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 3341725 - 3341818
Alignment:
Q  72 gtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaact 165  Q
    ||||||||||||| | | ||||||| |||||| |||||||||||||||||||    |   ||||||||||| | |||||||||| |||||||||    
T  3341725 gtggctagaattcacctttttcaaggtgaataagtggggtgtccggggttcgatccccggcccctgcatataataatgcatgtccctgccaact 3341818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 9769569 - 9769662
Alignment:
Q  72 gtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaact 165  Q
    |||| |||||||| | | ||||||| |||||| ||||||||||||||||||| |  | || |||| ||||| | |||||||||| |||||||||    
T  9769569 gtggttagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccaatccctacatataataatgcatgtccctgccaact 9769662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 11238019 - 11238100
Alignment:
Q  74 ggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtc 155  Q
    ||||||||||| | | |||||||||||||| |||||||||||||| |||| |  |  |||||||||||| | ||||||||||    
T  11238019 ggctagaattcacctttttcaagatgaataagtggggtgtccgggattcgaaccccgacccctgcatataataatgcatgtc 11238100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 165
Target Start/End: Complemental strand, 42908877 - 42908784
Alignment:
Q  72 gtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaact 165  Q
    |||| |||||||||| | |||||||| ||||| ||||||| ||||| ||||| |  |  |||||||||||| | |||||||||| |||||||||    
T  42908877 gtggttagaattctcctttttcaagaagaataagtggggtatccggagttcgaaccccgacccctgcatataacaatgcatgtccctgccaact 42908784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 23973460 - 23973552
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatg 153  Q
    |||||||||| ||||||||||||| | | ||||||  |||||| ||||||||| ||||||||| |  | ||||| ||||||| | ||||||||    
T  23973460 caagtagtctagtggctagaattcacatttttcaacgtgaataagtggggtgtacggggttcgaatcccaacccttgcatataataatgcatg 23973552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 9976373 - 9976424
Alignment:
Q  72 gtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcg 123  Q
    ||||||||||||| ||| ||||||| |||||| ||||||||||||| |||||    
T  9976373 gtggctagaattcacttttttcaaggtgaataagtggggtgtccggagttcg 9976424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 13941436 - 13941381
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccg 116  Q
    |||||||| | |||| |||||||| ||| |||||||||||||| ||||||||||||    
T  13941436 caagtagtttagtggttagaattcacttttttcaagatgaataagtggggtgtccg 13941381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 16182897 - 16182822
Alignment:
Q  90 tttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaact 165  Q
    |||||||||||||| ||||||||||||||||| | |  | | ||||| ||||| | |||||||||| |||||||||    
T  16182897 tttcaagatgaataagtggggtgtccggggtttgaaccccagcccctacatataataatgcatgtctctgccaact 16182822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 18179442 - 18179335
Alignment:
Q  64 gtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaa 163  Q
    ||||||| ||||||||||||||| | |||||||  ||||| |  ||||||| |||||||| | ||    |||||||||| | |||||||||| |||||||    
T  18179442 gtagtctagtggctagaattctcctttttcaaggagaataagcagggtgtctggggttcgaactccggtccctgcatataacaatgcatgtccctgccaa 18179343  T
Q  164 ctaagtta 171  Q
    || |||||    
T  18179342 ctgagtta 18179335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 179
Target Start/End: Complemental strand, 41677166 - 41677059
Alignment:
Q  72 gtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaactaagtta 171  Q
    ||||||||||||| | | ||||||| |||||| ||||||||||||| ||||| |  |  ||||| |||||| | |||| ||||| ||||||||| || ||    
T  41677166 gtggctagaattcacctttttcaaggtgaataagtggggtgtccggagttcgaaccccgacccccgcatataataatgaatgtctctgccaactgagcta 41677067  T
Q  172 cactcacg 179  Q
    | ||||||    
T  41677066 cgctcacg 41677059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 33844734 - 33844672
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcg 123  Q
    |||||||||| ||||||| ||||| | | ||||||  |||||| |||||||||||||||||||    
T  33844734 caagtagtctagtggctataattcacctttttcaaagtgaataagtggggtgtccggggttcg 33844672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 123
Target Start/End: Original strand, 33949244 - 33949306
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcg 123  Q
    |||||||||| ||||||| ||||| | | ||||||  |||||| |||||||||||||||||||    
T  33949244 caagtagtctagtggctataattcacctttttcaaagtgaataagtggggtgtccggggttcg 33949306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 48260179 - 48260229
Alignment:
Q  73 tggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcg 123  Q
    |||||||||||| | | ||||||| |||||| |||||||||||||||||||    
T  48260179 tggctagaattcacatttttcaaggtgaataagtggggtgtccggggttcg 48260229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 50859347 - 50859405
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggtt 121  Q
    ||||||| || ||||||||||||| |  |||| ||| ||||||||||||||||||||||||    
T  50859347 caagtagcctagtggctagaattcac--cttttaaggtgaatatgtggggtgtccggggtt 50859405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 165
Target Start/End: Complemental strand, 1244683 - 1244582
Alignment:
Q  64 gtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaa 163  Q
    ||||||| ||||||||||||| | | ||||||| |||||| ||||||||||||||||||| |  |  ||||||||||||   |||| ||||| |||||||    
T  1244683 gtagtctagtggctagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaacccccacccctgcatatagcaatgtatgtccctgccaa 1244584  T
Q  164 ct 165  Q
    ||    
T  1244583 ct 1244582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 39118507 - 39118386
Alignment:
Q  64 gtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaa 163  Q
    ||||||| ||||||||||||||| | ||| |||  ||||| ||||||||| |||| |||| | |||  ||||||||||| | |||| ||||| || ||||    
T  39118507 gtagtctagtggctagaattctccttttttaaggagaataagtggggtgttcgggattcgaactctggcccctgcatataacaatgtatgtccctaccaa 39118408  T
Q  164 ctaagttacactcacgaagaca 185  Q
    || |||||| ||||||| ||||    
T  39118407 ctgagttacgctcacgaggaca 39118386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 165
Target Start/End: Complemental strand, 34107391 - 34107287
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgc 160  Q
    |||||||||| ||||||||||||| | | ||||||| |||||| |||||||||| || ||||| |    ||||||||||||| |  || |||||| ||||    
T  34107391 caagtagtctagtggctagaattcacatttttcaaggtgaataagtggggtgtctggagttcgaacctcaacccctgcatataattatacatgtccctgc 34107292  T
Q  161 caact 165  Q
    |||||    
T  34107291 caact 34107287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 171
Target Start/End: Complemental strand, 40471259 - 40471160
Alignment:
Q  72 gtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaactaagtta 171  Q
    ||||||| ||||||| | ||| |||| ||||| ||||||||| |||| |||| |  | ||||||||||||| | |||||||||| ||| ||||| |||||    
T  40471259 gtggctataattctcctttttgaagaagaataagtggggtgttcgggattcgaatcccaacccctgcatataataatgcatgtccctgtcaactgagtta 40471160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 171
Target Start/End: Original strand, 39334859 - 39334969
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgc 160  Q
    |||||||||| ||||||||||||| | | ||||||  |||||| ||||| |||| || ||||| |  | | |||||| |||| | |||||||||| ||||    
T  39334859 caagtagtctagtggctagaattcacctttttcaaagtgaataagtgggatgtctggagttcgaaccccagcccctgtatataataatgcatgtccctgc 39334958  T
Q  161 caactaagtta 171  Q
    ||||| |||||    
T  39334959 caactgagtta 39334969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 42507405 - 42507344
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttc 122  Q
    |||||||| ||||| ||||||||| | | |||||| ||||||| ||||||||||||| ||||    
T  42507405 caagtagtttggtgtctagaattcacctttttcaaaatgaataagtggggtgtccggtgttc 42507344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 25783225 - 25783273
Alignment:
Q  94 aagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatat 142  Q
    |||||||||| ||||||||||| ||||||| |  |||||||||||||||    
T  25783225 aagatgaataagtggggtgtccagggttcgaaccctaacccctgcatat 25783273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 220340 - 220444
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgc 160  Q
    |||||||||| |||| |||||||| | | ||||||| |||||| |||||||||||||| |||| |  || ||| |||||||| | | |||||||| ||||    
T  220340 caagtagtctagtggttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccctgc 220439  T
Q  161 caact 165  Q
    |||||    
T  220440 caact 220444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 689495 - 689599
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgc 160  Q
    |||||||||| |||| |||||||| | | ||||||| |||||| |||||||||||||| |||| |  || ||| |||||||| | | |||||||| ||||    
T  689495 caagtagtctagtggttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccctgc 689594  T
Q  161 caact 165  Q
    |||||    
T  689595 caact 689599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 733963 - 734067
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgc 160  Q
    |||||||||| |||| |||||||| | | ||||||| |||||| |||||||||||||| |||| |  || ||| |||||||| | | |||||||| ||||    
T  733963 caagtagtctagtggttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccctgc 734062  T
Q  161 caact 165  Q
    |||||    
T  734063 caact 734067  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 857859 - 857963
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgc 160  Q
    |||||||||| |||| |||||||| | | ||||||| |||||| |||||||||||||| |||| |  || ||| |||||||| | | |||||||| ||||    
T  857859 caagtagtctagtggttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccctgc 857958  T
Q  161 caact 165  Q
    |||||    
T  857959 caact 857963  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 123
Target Start/End: Original strand, 12926457 - 12926518
Alignment:
Q  62 aagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcg 123  Q
    ||||||||| ||||||||||||  | | |||||||||||||| ||| |||||||||| ||||    
T  12926457 aagtagtctagtggctagaatttacctttttcaagatgaataagtgaggtgtccgggattcg 12926518  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 14011027 - 14011120
Alignment:
Q  72 gtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaact 165  Q
    |||| |||||||| | | ||| |||||||||| ||||| |||||| |||||| | ||   ||||||||||| | |||||||||| |||||||||    
T  14011027 gtggttagaattcacattttttaagatgaataagtgggatgtccgaggttcgaactccggcccctgcatataacaatgcatgtccctgccaact 14011120  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 123
Target Start/End: Original strand, 4798524 - 4798581
Alignment:
Q  64 gtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcg 123  Q
    ||||||| ||||||||||||| |  ||| |||| |||||| |||||||||||||||||||    
T  4798524 gtagtctagtggctagaattcac--cttacaaggtgaataagtggggtgtccggggttcg 4798581  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 10020447 - 10020551
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgc 160  Q
    ||||||| || |||| |||||||| | | |||||||||||||| ||||| ||| ||||||||| |  | ||||||||||||| | |||||||||| |||     
T  10020447 caagtaggctagtgggtagaattcacctttttcaagatgaataagtgggttgttcggggttcgaaccccaacccctgcatataacaatgcatgtccctgt 10020546  T
Q  161 caact 165  Q
    |||||    
T  10020547 caact 10020551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 164
Target Start/End: Original strand, 32309126 - 32309229
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgc 160  Q
    |||||||||| ||||||||||||| | | ||| ||| ||||||  ||||||||| | | |||| | ||  |||||||||||| | |||||||||| ||||    
T  32309126 caagtagtctagtggctagaattcacattttttaaggtgaataactggggtgtctgagattcgaactccgacccctgcatataacaatgcatgtccctgc 32309225  T
Q  161 caac 164  Q
    ||||    
T  32309226 caac 32309229  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 23799379 - 23799307
Alignment:
Q  99 gaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaactaagtta 171  Q
    ||||| |||||||||||| |||||| |  |  |||||||||||| | |||||||||| ||||||||| |||||    
T  23799379 gaataagtggggtgtccgaggttcgaatcccgacccctgcatataacaatgcatgtctctgccaactgagtta 23799307  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 32814908 - 32814840
Alignment:
Q  97 atgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaact 165  Q
    ||||||| |||||||||||||| |||| | ||  |||||||||||| | |||||||||| || ||||||    
T  32814908 atgaataagtggggtgtccgggattcgaactccgacccctgcatataataatgcatgtccctaccaact 32814840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 31556924 - 31556836
Alignment:
Q  72 gtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgc 160  Q
    ||||||||||||| |   ||||||| |||||| ||||||||||||||||||| | ||  |||||||||||| | |||||||||| ||||    
T  31556924 gtggctagaattcacccttttcaaggtgaataagtggggtgtccggggttcgaactccgacccctgcatataacaatgcatgtccctgc 31556836  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 165
Target Start/End: Complemental strand, 10106735 - 10106643
Alignment:
Q  73 tggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtcactgccaact 165  Q
    |||||||||||  | | |||||||||||||| ||||||||||||||||||| | | |  ||||| ||||| | |||| ||||| |||||||||    
T  10106735 tggctagaatttgcctttttcaagatgaataagtggggtgtccggggttcgaactttggcccctacatataataatggatgtccctgccaact 10106643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 41539427 - 41539337
Alignment:
Q  65 tagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcatgtc 155  Q
    |||||| ||| ||||||||| | | ||||||||| |||| |||||||||| |||||||| | |  ||||||||||||| |  |||||||||    
T  41539427 tagtctagtgactagaattcacctttttcaagattaataagtggggtgtctggggttcgaactacaacccctgcatataattatgcatgtc 41539337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 22396995 - 22397028
Alignment:
Q  90 tttcaagatgaatatgtggggtgtccggggttcg 123  Q
    |||||||||||||| |||||||||||||||||||    
T  22396995 tttcaagatgaataagtggggtgtccggggttcg 22397028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 37986845 - 37986906
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttc 122  Q
    ||||||| || ||||||||||||| | | ||||||| |||||| ||||| ||||||||||||    
T  37986845 caagtagcctagtggctagaattcacctttttcaaggtgaataagtgggatgtccggggttc 37986906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 13862230 - 13862151
Alignment:
Q  72 gtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcgtagtctaacccctgcatatcagaatgcat 152  Q
    |||| |||||||||| | |||||||| ||||| ||||||||||| ||||||| | ||  |||||||||||| | |||||||    
T  13862230 gtggttagaattctcctttttcaagaagaataagtggggtgtcc-gggttcgaactccgacccctgcatataacaatgcat 13862151  T

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Target: scaffold0119 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 123
Target Start/End: Complemental strand, 1156 - 1094
Alignment:
Q  61 caagtagtctggtggctagaattctcttctttcaagatgaatatgtggggtgtccggggttcg 123  Q
    |||||||| | ||||||||||||| | | ||||||| |||||| |||||||||| ||||||||    
T  1156 caagtagtttagtggctagaattcacctttttcaaggtgaataagtggggtgtctggggttcg 1094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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