View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3771_low_7 (Length: 404)

Name: NF3771_low_7
Description: NF3771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3771_low_7
NF3771_low_7
[»] chr3 (19 HSPs)
chr3 (95-390)||(5354551-5354849)
chr3 (33-232)||(28784581-28784778)
chr3 (34-232)||(48707575-48707771)
chr3 (34-227)||(48023881-48024072)
chr3 (34-188)||(5913484-5913635)
chr3 (38-103)||(5353443-5353506)
chr3 (232-283)||(6931031-6931082)
chr3 (156-227)||(48027291-48027363)
chr3 (156-224)||(48025111-48025180)
chr3 (231-283)||(6890976-6891028)
chr3 (236-283)||(45182964-45183011)
chr3 (234-282)||(33040934-33040982)
chr3 (156-227)||(48024551-48024623)
chr3 (236-283)||(6503706-6503753)
chr3 (231-310)||(19565611-19565690)
chr3 (236-283)||(35514249-35514296)
chr3 (234-310)||(45335856-45335932)
chr3 (230-283)||(11018349-11018402)
chr3 (231-259)||(19237169-19237197)
[»] chr8 (7 HSPs)
chr8 (33-232)||(44734220-44734417)
chr8 (33-232)||(44731909-44732106)
chr8 (233-283)||(23402088-23402138)
chr8 (234-283)||(2729333-2729382)
chr8 (233-283)||(36408531-36408581)
chr8 (239-283)||(4403994-4404038)
chr8 (239-283)||(16788162-16788206)
[»] chr5 (13 HSPs)
chr5 (33-232)||(32798074-32798271)
chr5 (33-232)||(32800386-32800583)
chr5 (233-332)||(26543853-26543952)
chr5 (233-331)||(12278949-12279047)
chr5 (233-283)||(31680347-31680397)
chr5 (233-283)||(17332688-17332738)
chr5 (233-331)||(31501805-31501903)
chr5 (236-310)||(37254624-37254698)
chr5 (232-283)||(36291350-36291401)
chr5 (233-263)||(4307240-4307270)
chr5 (233-263)||(15917017-15917047)
chr5 (230-283)||(202616-202669)
chr5 (232-328)||(10033906-10034002)
[»] chr2 (14 HSPs)
chr2 (33-232)||(45336327-45336524)
chr2 (33-232)||(45338639-45338836)
chr2 (34-227)||(17648944-17649135)
chr2 (34-227)||(14662403-14662594)
chr2 (231-332)||(34523218-34523319)
chr2 (78-201)||(1454025-1454149)
chr2 (84-202)||(132764-132882)
chr2 (267-331)||(22466262-22466326)
chr2 (233-283)||(8147331-8147381)
chr2 (233-283)||(45418563-45418613)
chr2 (234-283)||(44084740-44084789)
chr2 (234-331)||(770975-771077)
chr2 (233-283)||(26237937-26237987)
chr2 (233-263)||(12756982-12757012)
[»] chr1 (8 HSPs)
chr1 (33-232)||(1550224-1550422)
chr1 (33-232)||(9535323-9535520)
chr1 (269-332)||(21976994-21977057)
chr1 (234-281)||(31866958-31867005)
chr1 (236-310)||(35907535-35907609)
chr1 (231-270)||(33489665-33489704)
chr1 (233-283)||(44352620-44352670)
chr1 (77-123)||(47695723-47695769)
[»] chr4 (22 HSPs)
chr4 (33-232)||(22804679-22804876)
chr4 (35-227)||(7230847-7231035)
chr4 (231-283)||(49908789-49908841)
chr4 (233-283)||(6690372-6690422)
chr4 (233-283)||(5517501-5517551)
chr4 (233-279)||(13393011-13393057)
chr4 (233-279)||(13396150-13396196)
chr4 (234-310)||(30216852-30216928)
chr4 (232-283)||(3293033-3293084)
chr4 (233-310)||(10352994-10353071)
chr4 (231-283)||(7769306-7769358)
chr4 (231-283)||(43143721-43143773)
chr4 (232-279)||(50720487-50720534)
chr4 (233-283)||(6212035-6212085)
chr4 (242-308)||(30109945-30110011)
chr4 (233-283)||(50205214-50205264)
chr4 (235-283)||(17554978-17555026)
chr4 (236-283)||(29996120-29996167)
chr4 (233-283)||(12680199-12680249)
chr4 (253-291)||(36382474-36382512)
chr4 (231-283)||(27363339-27363391)
chr4 (231-263)||(37236648-37236680)
[»] chr7 (13 HSPs)
chr7 (34-227)||(13110996-13111188)
chr7 (34-227)||(13108704-13108895)
chr7 (233-283)||(7002705-7002755)
chr7 (233-283)||(7048576-7048626)
chr7 (233-283)||(8867868-8867918)
chr7 (236-310)||(34389166-34389240)
chr7 (231-282)||(26624723-26624774)
chr7 (233-331)||(33685544-33685642)
chr7 (234-308)||(37002256-37002330)
chr7 (233-283)||(43184605-43184655)
chr7 (253-283)||(36630816-36630846)
chr7 (256-328)||(3114188-3114260)
chr7 (233-265)||(36658173-36658205)
[»] scaffold0012 (1 HSPs)
scaffold0012 (246-390)||(194021-194166)
[»] scaffold0769 (1 HSPs)
scaffold0769 (235-332)||(1259-1356)
[»] chr6 (8 HSPs)
chr6 (36-219)||(6723544-6723726)
chr6 (232-331)||(24697906-24698005)
chr6 (233-312)||(28996710-28996789)
chr6 (233-283)||(13646997-13647047)
chr6 (233-283)||(34385525-34385575)
chr6 (253-331)||(18339106-18339184)
chr6 (232-310)||(29743262-29743340)
chr6 (239-312)||(31028472-31028545)
[»] scaffold0168 (1 HSPs)
scaffold0168 (269-332)||(12702-12765)
[»] scaffold0154 (1 HSPs)
scaffold0154 (233-331)||(31460-31558)
[»] scaffold0502 (1 HSPs)
scaffold0502 (253-331)||(5230-5308)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 95 - 390
Target Start/End: Original strand, 5354551 - 5354849
Alignment:
Q  95 ttaaacttaagcatacactacaaatatatagagccaagccataagcttacttgtaagactaaacataaaatctgcactaaatctactctaaacactagtc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5354551 ttaaacttaagcatacactacaaatatatagagccaagccataagcttacttgtaagactaaacataaaatctgcactaaatctactctaaacactagtc 5354650  T
Q  195 attattacctaagaaccatagacatcattacctgggaccaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcct 294  Q
    |||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  5354651 attattacctaagaaccataaacatcattacctaggaccgggggcagtttcaccgcccggcgaccccgggcggtcgcccgggctcgatccttaattttct 5354750  T
Q  295 cacattaggcccaacctataggcccatttacacacttc---nnnnnnnnnnttgggcaaatacatcacacgcatcacaaattcacaacacaaactctct 390  Q
    ||||||||| ||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5354751 cacattaggtccaacctataggcccatttacacacttcaaaaaaaaaaaaattgggcaaatacatcacacgcatcacaaattcacaacacaaactctct 5354849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 28784778 - 28784581
Alignment:
Q  33 gttagagaagacaacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaag 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  28784778 gttagagaagacaacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacactacaaatatatagaatcaag 28784681  T
Q  133 ccataagcttacttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcattattacctaagaaccatagacatcattacctgggac 232  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  28784680 ccataagcttgcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagacatcattacctaggac 28784581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 34 - 232
Target Start/End: Original strand, 48707575 - 48707771
Alignment:
Q  34 ttagagaagacaacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagc 133  Q
    ||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||    
T  48707575 ttagagaagacaacaatattttgtgaacaaagtactaaaagct--aagatactttgatacgttaaatttaagcatacactacaaatatatagagtcaagc 48707672  T
Q  134 cataagcttacttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcattattacctaagaaccatagacatcattacctgggac 232  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||| ||||    
T  48707673 cataagcttgcttgtaagactaaacataaaatctacactaaatctactttaaacactagtcatcattacctaaaaaccatagacatcattacctaggac 48707771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 34 - 227
Target Start/End: Original strand, 48023881 - 48024072
Alignment:
Q  34 ttagagaagacaacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagc 133  Q
    ||||||||||||||||| ||||||||| ||| ||   |||   |||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||    
T  48023881 ttagagaagacaacaatattttgtgaataaaata---aaacagttaagatacttttatacattaaactgaagcatacactacaaatatatagagtcaagc 48023977  T
Q  134 cataagcttacttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcattattacctaagaaccatagacatcattacct 227  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| ||||||||||  |  |||||||||||||||    
T  48023978 cataagcttgcttgtaagactgaacataaaatctgcactaaatctactcttaagcactagtcatcattacctaagttcattagacatcattacct 48024072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 34 - 188
Target Start/End: Complemental strand, 5913635 - 5913484
Alignment:
Q  34 ttagagaagacaacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagc 133  Q
    ||||||||||| | || |||||| ||||||||||  |||||  || |||||||||||||||||||  |  | |||||   |||||||||||||| ||| |    
T  5913635 ttagagaagacgataaagttttgagaacaaagtaa-aaaag--ttgagatactttgatacattaagttgtatcatacttaacaaatatatagagtcaaac 5913539  T
Q  134 cataagcttacttgtaagactaaacataaaatctgcactaaatctactctaaaca 188  Q
    ||||||||| ||||||||| | ||||||||||||||| |||||||||||||||||    
T  5913538 cataagcttgcttgtaagattgaacataaaatctgcattaaatctactctaaaca 5913484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 5353443 - 5353506
Alignment:
Q  38 agaagacaacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaactta 103  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  5353443 agaagacaacaatgttttgtgaacaaagtactaaaagc--taagatactttgatacattaaactta 5353506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 6931082 - 6931031
Alignment:
Q  232 ccaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6931082 ccaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 6931031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 48027291 - 48027363
Alignment:
Q  156 aacataaaatctgcactaaatctactctaaa-cactagtcattattacctaagaaccatagacatcattacct 227  Q
    |||||||||||| ||||||||||||||| || |||||||||| ||||||||||||| ||||||||||||||||    
T  48027291 aacataaaatctacactaaatctactcttaagcactagtcatcattacctaagaacaatagacatcattacct 48027363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 48025111 - 48025180
Alignment:
Q  156 aacataaaatctgcactaaatctactctaaa-cactagtcattattacctaagaaccatagacatcatta 224  Q
    |||||||||||| ||||||||||||||| || |||||||||| ||||||||||||| |||||||||||||    
T  48025111 aacataaaatctacactaaatctactcttaagcactagtcatcattacctaagaacaatagacatcatta 48025180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 6890976 - 6891028
Alignment:
Q  231 accaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  6890976 accaggggcggtttcaccgcccggcgacaccgggcggtcgcccgggctcgatc 6891028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 45182964 - 45183011
Alignment:
Q  236 gggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  45182964 gggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatc 45183011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 33040934 - 33040982
Alignment:
Q  234 aggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgat 282  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  33040934 aggggcggtttcaccgcccggcgaccccgggcggtcgctcgggctcgat 33040982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 48024551 - 48024623
Alignment:
Q  156 aacataaaatctgcactaaatctactctaaa-cactagtcattattacctaagaaccatagacatcattacct 227  Q
    |||||||||||| ||||||||||||| | || |||||||||| ||||||||||||| ||| ||||||||||||    
T  48024551 aacataaaatctacactaaatctactattaagcactagtcatcattacctaagaacaataaacatcattacct 48024623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 6503753 - 6503706
Alignment:
Q  236 gggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||    
T  6503753 gggcggtttcaccgtccggcgaccccgggcggtcgcccgggctcgatc 6503706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 19565690 - 19565611
Alignment:
Q  231 accaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacc 310  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||| || |||  ||||||   |||||||| |||||||    
T  19565690 accaggggcggtttcaccgcccggcgatcccgggcggtcgcccgggttcaatcgataatttttgcacattagacccaacc 19565611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 35514249 - 35514296
Alignment:
Q  236 gggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  35514249 gggcagtttcaccgcccggcgaccccggacggtcgtccgggctcgatc 35514296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 45335856 - 45335932
Alignment:
Q  234 aggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacc 310  Q
    |||||||||||||||||||||||||| ||| ||||||||||| ||| |||  ||||||   |||||||| |||||||    
T  45335856 aggggcggtttcaccgcccggcgacctcgggcggtcgcccggactcaatcgataatttttacacattagacccaacc 45335932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 11018402 - 11018349
Alignment:
Q  230 gaccaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||| |||||||||||||| |||||||| |||| ||||||||| |||||||||    
T  11018402 gaccatgggcggtttcaccgtccggcgactccgggcggtcgcccaggctcgatc 11018349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 259
Target Start/End: Original strand, 19237169 - 19237197
Alignment:
Q  231 accaggggcggtttcaccgcccggcgacc 259  Q
    |||||||||||||||||||||||||||||    
T  19237169 accaggggcggtttcaccgcccggcgacc 19237197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 173; Significance: 7e-93; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 44734417 - 44734220
Alignment:
Q  33 gttagagaagacaacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaag 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44734417 gttagagaagacaacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacactacaaatatatagagtcaag 44734320  T
Q  133 ccataagcttacttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcattattacctaagaaccatagacatcattacctgggac 232  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  44734319 ccataagcttgcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagacatcattacctaggac 44734220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 44732106 - 44731909
Alignment:
Q  33 gttagagaagacaacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaag 132  Q
    ||||||||||||||  |||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44732106 gttagagaagacaatgatgttttgtgaaaaaagtactaaaagct--aagatactttgatacattaaacttaagcatacactacaaatatatagagtcaag 44732009  T
Q  133 ccataagcttacttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcattattacctaagaaccatagacatcattacctgggac 232  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||| ||||    
T  44732008 ccataagcttgcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcatcacctaagaaccatatacatcattacctaggac 44731909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 23402088 - 23402138
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23402088 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatc 23402138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 2729382 - 2729333
Alignment:
Q  234 aggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  2729382 aggggcggtttcaccgcccggcgaccccgggcggacgcccgggctcgatc 2729333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 36408531 - 36408581
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    |||||| |||||||||||||||||||| ||| |||||||||||||||||||    
T  36408531 caggggtggtttcaccgcccggcgacctcgggcggtcgcccgggctcgatc 36408581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 4403994 - 4404038
Alignment:
Q  239 cggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||||| | ||||||||||| | |||||||||||||||||||    
T  4403994 cggtttcactggccggcgaccccaggcggtcgcccgggctcgatc 4404038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 16788206 - 16788162
Alignment:
Q  239 cggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||||  ||||||| ||||||| |||||||||||||||||||    
T  16788206 cggtttcattgcccggcaaccccgggcggtcgcccgggctcgatc 16788162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 4e-88; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 32798271 - 32798074
Alignment:
Q  33 gttagagaagacaacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaag 132  Q
    |||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32798271 gttaaagaagacaacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacaatacaaatatatagagccaag 32798174  T
Q  133 ccataagcttacttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcattattacctaagaaccatagacatcattacctgggac 232  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  32798173 ccataagcttgcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggac 32798074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 32800583 - 32800386
Alignment:
Q  33 gttagagaagacaacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaag 132  Q
    |||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32800583 gttaaagaagacaacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacaatacaaatatatagagccaag 32800486  T
Q  133 ccataagcttacttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcattattacctaagaaccatagacatcattacctgggac 232  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  32800485 ccataagcttgcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggac 32800386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 233 - 332
Target Start/End: Complemental strand, 26543952 - 26543853
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacctataggcccatttacacacttc 332  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  26543952 caggggcggttttaccgcccggcgaccccgggcggtcgcccgggctcgatccgtaatttcctcacattaggcccaacatataggcccatttacacacttc 26543853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 12279047 - 12278949
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacctataggcccatttacacactt 331  Q
    ||||||||||||||||||||||||| ||||| ||||||||||| |||||||  ||||||   |||||||| ||||||| | ||||| ||| ||||||||    
T  12279047 caggggcggtttcaccgcccggcgatcccgggcggtcgcccggactcgatcgataatttttgcacattagacccaacccaaaggccaattaacacactt 12278949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 31680347 - 31680397
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31680347 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatc 31680397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 17332738 - 17332688
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  17332738 caggggcggtttcaccgcccggcgaccccgggcgttcgcccgggctcgatc 17332688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 331
Target Start/End: Complemental strand, 31501903 - 31501805
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacctataggcccatttacacactt 331  Q
    ||||||||||||||||||||||||||||||| || | ||||||||||||||  ||||||   |||||||| ||||||| | | ||| ||| ||||||||    
T  31501903 caggggcggtttcaccgcccggcgaccccgggcgattgcccgggctcgatcgataatttttgcacattagacccaacccaaaagccaattaacacactt 31501805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 37254624 - 37254698
Alignment:
Q  236 gggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacc 310  Q
    ||||||||||||||| |||||||||| | ||||||||| |||||||||  ||||||   |||||||| |||||||    
T  37254624 gggcggtttcaccgctcggcgaccccaggcggtcgcccaggctcgatcgataatttttgcacattagacccaacc 37254698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 36291350 - 36291401
Alignment:
Q  232 ccaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    |||||||||||||||||||||| |||| |||| |||||| ||||| ||||||    
T  36291350 ccaggggcggtttcaccgcccgccgactccgggcggtcgtccgggttcgatc 36291401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 4307270 - 4307240
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccgg 263  Q
    |||||||||||||||||||||||||||||||    
T  4307270 caggggcggtttcaccgcccggcgaccccgg 4307240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 263
Target Start/End: Original strand, 15917017 - 15917047
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccgg 263  Q
    |||||||||||||||||||||||||||||||    
T  15917017 caggggcggtttcaccgcccggcgaccccgg 15917047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 202616 - 202669
Alignment:
Q  230 gaccaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    |||| ||||||||||||||||||| ||||||  |  ||||||||||||||||||    
T  202616 gaccgggggcggtttcaccgcccgacgaccctaggtggtcgcccgggctcgatc 202669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 328
Target Start/End: Original strand, 10033906 - 10034002
Alignment:
Q  232 ccaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacctataggcccatttacaca 328  Q
    ||||||||||||  ||||   |||||||||||||| ||||||||||||||||  ||||||   |||||||| | ||||| | | ||||||| |||||    
T  10033906 ccaggggcggttctaccgtatggcgaccccggacgatcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacaca 10034002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 45336524 - 45336327
Alignment:
Q  33 gttagagaagacaacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaag 132  Q
    |||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45336524 gttaaagaagacaacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacaatacaaatatatagagccaag 45336427  T
Q  133 ccataagcttacttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcattattacctaagaaccatagacatcattacctgggac 232  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  45336426 ccataagcttgcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggac 45336327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 45338836 - 45338639
Alignment:
Q  33 gttagagaagacaacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaag 132  Q
    |||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45338836 gttaaagaagacaacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaagcatacaatacaaatatatagagccaag 45338739  T
Q  133 ccataagcttacttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcattattacctaagaaccatagacatcattacctgggac 232  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  45338738 ccataagcttgcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctaggac 45338639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 17649135 - 17648944
Alignment:
Q  34 ttagagaagacaacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagc 133  Q
    ||||||||||||||||||||||||||||||||||  |||| ||  |||||||||||||||||| | || |||||||||  ||||||||||||||||||||    
T  17649135 ttagagaagacaacaatgttttgtgaacaaagtaaaaaaaact--aagatactttgatacatttagctgaagcatacataacaaatatatagagccaagc 17649038  T
Q  134 cataagcttacttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcattattacctaagaaccatagacatcattacct 227  Q
    ||||||||| ||||||||| | |||||||||| |||||||||||||||||||||||||||||| ||||||||||||   |||||||||||||||    
T  17649037 cataagcttgcttgtaagattgaacataaaatatgcactaaatctactctaaacactagtcatcattacctaagaatattagacatcattacct 17648944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 34 - 227
Target Start/End: Complemental strand, 14662594 - 14662403
Alignment:
Q  34 ttagagaagacaacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagc 133  Q
    ||||||||||||||||||||||  ||||||||||  ||||    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14662594 ttagagaagacaacaatgttttaggaacaaagtaaaaaaac---taagatactttgatacattaaactgaagcatacactacaaatatatagagccaagc 14662498  T
Q  134 cataagcttacttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcattattacctaagaaccatagacatcattacct 227  Q
    ||||| ||| ||||||| ||| ||||||| |||||||| |||||||||| ||| |||||||||||||||||||  ||| ||||||||||||||||    
T  14662497 cataaacttgcttgtaaaactgaacataagatctgcacgaaatctactcttaagcactagtcattattacctagcaacaatagacatcattacct 14662403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 231 - 332
Target Start/End: Original strand, 34523218 - 34523319
Alignment:
Q  231 accaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacctataggcccatttacacact 330  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  34523218 accaggggcggttttaccgcccggcgaccccgggcggtcgcccgggctcgatccgtaatttcctcacattaggcccaacatataggcccatttacacact 34523317  T
Q  331 tc 332  Q
    ||    
T  34523318 tc 34523319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 78 - 201
Target Start/End: Complemental strand, 1454149 - 1454025
Alignment:
Q  78 taagatactttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttacttgtaagactaaacataaaa-tctgcactaaat 176  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| | | || |||||| |||||| |||||    
T  1454149 taagatactttgatacattaaactgaagcatacactacaaatatatagagccaagccataagctttcttgtaaaattgaaaataaaactctgcagtaaat 1454050  T
Q  177 ctactctaaacactagtcattatta 201  Q
    ||| | |||||||||||||| ||||    
T  1454049 ctattttaaacactagtcatcatta 1454025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 84 - 202
Target Start/End: Complemental strand, 132882 - 132764
Alignment:
Q  84 actttgatacattaaacttaagcatacactacaaatatatagagccaagccataagcttacttgtaagactaaacataaaatctgcactaaatctactct 183  Q
    ||||| |||||| ||||| ||||||||||||||||||||||||| |||||||||||  | | ||||||||| || || ||||||||| ||||||||||||    
T  132882 actttaatacatcaaactgaagcatacactacaaatatatagaggcaagccataagtctgcctgtaagactgaaaatcaaatctgcaataaatctactct 132783  T
Q  184 aaacactagtcattattac 202  Q
    ||||||||| ||| |||||    
T  132782 aaacactagccatcattac 132764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 22466262 - 22466326
Alignment:
Q  267 gtcgcccgggctcgatccttaatttcctcacattaggcccaacctataggcccatttacacactt 331  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  22466262 gtcgcccgggctcgatccgtaatttcctcacattaggcccaacctatagacccatttacacactt 22466326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 8147331 - 8147381
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8147331 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatc 8147381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 45418563 - 45418613
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45418563 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatc 45418613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 44084789 - 44084740
Alignment:
Q  234 aggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||    
T  44084789 aggggcggtttcaccgcccggcgaccccgggcagtcgcccgggctcgatc 44084740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 331
Target Start/End: Original strand, 770975 - 771077
Alignment:
Q  234 aggggcggtttcaccgcccggcgac-----cccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacctataggcccatttacaca 328  Q
    |||||||||||||||||||||||||     ||||| |||||||||||||||||||  ||| ||   |||||||| ||||||| | | ||||||| |||||    
T  770975 aggggcggtttcaccgcccggcgaccggatcccgggcggtcgcccgggctcgatcgataacttttgcacattagacccaaccaaaaagcccattaacaca 771074  T
Q  329 ctt 331  Q
    |||    
T  771075 ctt 771077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 26237937 - 26237987
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    |||||| ||||| || ||||||||||||||| |||||||||||||||||||    
T  26237937 caggggtggttttacagcccggcgaccccgggcggtcgcccgggctcgatc 26237987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 263
Target Start/End: Complemental strand, 12757012 - 12756982
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccgg 263  Q
    |||||||||||||||||||||||||||||||    
T  12757012 caggggcggtttcaccgcccggcgaccccgg 12756982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 1550422 - 1550224
Alignment:
Q  33 gttagagaagacaacaatgttttgtgaacaaagtactaaaa-gctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaa 131  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1550422 gttagagaagacaacaatgttttgtgaacaaagtactaaaaagct--aagatactttgatacattaaacttaagcatacattacaaatatatagagccaa 1550325  T
Q  132 gccataagcttacttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcattattacctaagaaccatagacatcattacctggga 231  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||    
T  1550324 gccataagcttgcttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcatcattacctaagaaccatagatatcattacctagga 1550225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 9535520 - 9535323
Alignment:
Q  33 gttagagaagacaacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaag 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  9535520 gttagagaagacaacaatgttttgtgaacaaagtactaaaagct--aagatactttgatacattaaacttaaacatacactacaaatatatagagtcaag 9535423  T
Q  133 ccataagcttacttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcattattacctaagaaccatagacatcattacctgggac 232  Q
    |||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  9535422 ccataaacttgcttgtaagactaaacataaaatctacactaaatctactctaaacactagtcatcattacctaagaaccatagaaatcattacctaggac 9535323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 269 - 332
Target Start/End: Complemental strand, 21977057 - 21976994
Alignment:
Q  269 cgcccgggctcgatccttaatttcctcacattaggcccaacctataggcccatttacacacttc 332  Q
    |||||||  ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  21977057 cgcccggcgtcgatccgtaatttcctcacattaggcccaacatataggcccatttacacacttc 21976994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 281
Target Start/End: Original strand, 31866958 - 31867005
Alignment:
Q  234 aggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcga 281  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||    
T  31866958 aggggcggtttcaccgcccggcgaccccgggcggtcgcccgggttcga 31867005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 35907535 - 35907609
Alignment:
Q  236 gggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacc 310  Q
    |||||||||||||||||||||||| ||| |||||||||||||| ||||  ||||||   |||||||| |||||||    
T  35907535 gggcggtttcaccgcccggcgacctcgggcggtcgcccgggcttgatcgataatttttgcacattagacccaacc 35907609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 231 - 270
Target Start/End: Original strand, 33489665 - 33489704
Alignment:
Q  231 accaggggcggtttcaccgcccggcgaccccggacggtcg 270  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  33489665 accaggggcggtttcaccacccggcgaccccggacggtcg 33489704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 44352670 - 44352620
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||||||||||||  |||||||||||||  ||||||||||||||||||    
T  44352670 caggggcggtttcaccatccggcgaccccgggaggtcgcccgggctcgatc 44352620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 47695723 - 47695769
Alignment:
Q  77 ttaagatactttgatacattaaacttaagcatacactacaaatatat 123  Q
    |||||||| |||||||||||||||| ||||||||||| |||||||||    
T  47695723 ttaagataatttgatacattaaactaaagcatacactgcaaatatat 47695769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 22804876 - 22804679
Alignment:
Q  33 gttagagaagacaacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaag 132  Q
    ||||||||||| |||||| ||||||||| |||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  22804876 gttagagaagataacaatattttgtgaaaaaagtactaaaag--ttaagatactttgatacattaaacttaaacatacactacaaatatatagagccaag 22804779  T
Q  133 ccataagcttacttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcattattacctaagaaccatagacatcattacctgggac 232  Q
    |||||||  |  |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  22804778 ccataagtctgtttgtaagactaaacataaaatctgcattaaatctactctaaacactagtcatcattacctaagaaccatagacatcattacctaggac 22804679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 35 - 227
Target Start/End: Original strand, 7230847 - 7231035
Alignment:
Q  35 tagagaagacaacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagcc 134  Q
    |||||||||||| || |||||| |||||| |||  |||||||  |||||||||||| |||||||  | |||||||||  ||||| |||||||||||||||    
T  7230847 tagagaagacaataaagttttgagaacaacgtaa-aaaagct--aagatactttgacacattaagttaaagcatacataacaaa-atatagagccaagcc 7230942  T
Q  135 ataagcttacttgtaagactaaacataaaatctgcactaaatctactctaaacactagtcattattacctaagaaccatagacatcattacct 227  Q
    |||| ||| |||| |||| | ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||    
T  7230943 ataaactttcttggaagattgaacataaaatctgcactaaatctgctctaaacactagtcatcattacctaggaaccatagacatcattacct 7231035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 49908841 - 49908789
Alignment:
Q  231 accaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  49908841 accaggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatc 49908789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 6690422 - 6690372
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6690422 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgggctcgatc 6690372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 5517551 - 5517501
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  5517551 caggggcggtttcaccgcccggcgaccccgggcggtcgcctgggctcgatc 5517501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 13393057 - 13393011
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctc 279  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  13393057 caggggcggtttcaccgcccagcgaccccggacggtcgcccgggctc 13393011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 13396196 - 13396150
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctc 279  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  13396196 caggggcggtttcaccgcccagcgaccccggacggtcgcccgggctc 13396150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 30216928 - 30216852
Alignment:
Q  234 aggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacc 310  Q
    |||||||| ||||||| ||||||||||||| |||||||||||||||||||  ||||||   |||||||| |||||||    
T  30216928 aggggcggattcaccgtccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacc 30216852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 3293084 - 3293033
Alignment:
Q  232 ccaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||||||||||||||||| | |||||||| |||||||||||||||||||    
T  3293084 ccaggggcggtttcaccgcccagtgaccccgggcggtcgcccgggctcgatc 3293033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 10353071 - 10352994
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacc 310  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||||| |||  ||||||   |||||||| |||||||    
T  10353071 caggggcggtttcaccgtccggcgacccctggcggtcgcccgggctcaatcgataatttttgcacattagacccaacc 10352994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 7769306 - 7769358
Alignment:
Q  231 accaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    |||| |||||||||||||| ||||||||||| | |||||||||||||||||||    
T  7769306 accatgggcggtttcaccgtccggcgaccccaggcggtcgcccgggctcgatc 7769358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 43143773 - 43143721
Alignment:
Q  231 accaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    |||| |||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  43143773 accatgggcggtttcaccgtccgacgaccccgggcggtcgcccgggctcgatc 43143721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 50720534 - 50720487
Alignment:
Q  232 ccaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctc 279  Q
    |||| ||||||||||||||||||||||| ||| |||||||||||||||    
T  50720534 ccagaggcggtttcaccgcccggcgacctcgggcggtcgcccgggctc 50720487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 6212085 - 6212035
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||||||||||||| ||||||||| ||| |||||||||| ||||||||    
T  6212085 caggggcggtttcaccgtccggcgacctcgggcggtcgcccgagctcgatc 6212035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 30109945 - 30110011
Alignment:
Q  242 tttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaa 308  Q
    |||||||||||| ||||||||||||||||||||| |||||||  ||||||   |||||||| |||||    
T  30109945 tttcaccgcccgacgaccccggacggtcgcccggactcgatcgataatttttgcacattagacccaa 30110011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 50205264 - 50205214
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||||||||||||| ||||||| ||||| |||||||||| ||||||||    
T  50205264 caggggcggtttcaccgtccggcgatcccgggcggtcgcccgagctcgatc 50205214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 17554978 - 17555026
Alignment:
Q  235 ggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||||||||||| ||| |||||||||  ||||||||||||||||||    
T  17554978 ggggcggtttcaccgtccgacgaccccgggtggtcgcccgggctcgatc 17555026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 283
Target Start/End: Complemental strand, 29996167 - 29996120
Alignment:
Q  236 gggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    |||||||||||||||||| ||| |||||||||||| |||| |||||||    
T  29996167 gggcggtttcaccgcccgacgatcccggacggtcgtccggactcgatc 29996120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 12680249 - 12680199
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    |||||||||||||||||||| || ||||| | |||| ||||||||||||||    
T  12680249 caggggcggtttcaccgcccagcaaccccaggcggtggcccgggctcgatc 12680199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 291
Target Start/End: Complemental strand, 36382512 - 36382474
Alignment:
Q  253 ggcgaccccggacggtcgcccgggctcgatccttaattt 291  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  36382512 ggcgaccccgggcggtcgcccgggctcgatccataattt 36382474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 283
Target Start/End: Original strand, 27363339 - 27363391
Alignment:
Q  231 accaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    |||||||||||||| ||||   ||||||| ||| |||||||||||||||||||    
T  27363339 accaggggcggttttaccgtatggcgacctcgggcggtcgcccgggctcgatc 27363391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 263
Target Start/End: Complemental strand, 37236680 - 37236648
Alignment:
Q  231 accaggggcggtttcaccgcccggcgaccccgg 263  Q
    |||||| ||||||||||||||||||||||||||    
T  37236680 accaggagcggtttcaccgcccggcgaccccgg 37236648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 1e-51; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 34 - 227
Target Start/End: Original strand, 13110996 - 13111188
Alignment:
Q  34 ttagagaagacaacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagc 133  Q
    ||||||||||||||||| |||||||||||||||| ||||| ||  || ||| |||||||||||||||| ||||||| | ||||||||||| |||||||||    
T  13110996 ttagagaagacaacaatattttgtgaacaaagtaataaaaact--aaaatattttgatacattaaactgaagcataaaatacaaatatattgagccaagc 13111093  T
Q  134 cataagcttacttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcattattacctaagaaccatagacatcattacct 227  Q
    ||||||||| ||||||||| | | |||||||| |||||||||||||||| ||| |||||||||| ||||||||||||| |||||||| |||||||    
T  13111094 cataagcttgcttgtaagagtgagcataaaatttgcactaaatctactcttaagcactagtcatcattacctaagaacaatagacattattacct 13111188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 34 - 227
Target Start/End: Original strand, 13108704 - 13108895
Alignment:
Q  34 ttagagaagacaacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagc 133  Q
    ||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||    
T  13108704 ttagagaagacaacaatgttttgtgaacaaagtaa-aaaagct--aagatactttgatacattaaactgaagcatacactacaaatatatggagtcaagc 13108800  T
Q  134 cataagcttacttgtaagactaaacataaaatctgcactaaatctactc-taaacactagtcattattacctaagaaccatagacatcattacct 227  Q
    |||||| || ||||||||||| || ||||||| ||  |||||||||||| ||| |||||||||| |||||| |||||| |||   ||||||||||    
T  13108801 cataagtttgcttgtaagactgaatataaaatatgttctaaatctactcttaagcactagtcatcattacccaagaacaatatgtatcattacct 13108895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 7002705 - 7002755
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  7002705 caggggcggtttcaccgcccggcgaccccgagcggtcgcccgggctcgatc 7002755  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 7048576 - 7048626
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  7048576 caggggcggtttcaccgcccggcgaccccgagcggtcgcccgggctcgatc 7048626  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 8867918 - 8867868
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  8867918 caggggcagtttcaccgcccggcgaccccgggcggtcgcccgggctcgatc 8867868  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 310
Target Start/End: Complemental strand, 34389240 - 34389166
Alignment:
Q  236 gggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacc 310  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||  ||||||   |||||||| |||||||    
T  34389240 gggcgatttcaccgcccggcgaccccgggcggtcgcccgggctcgatcgataatttttgcacattagacccaacc 34389166  T

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Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 26624723 - 26624774
Alignment:
Q  231 accaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgat 282  Q
    ||||||||||||||||||||||||| ||||||| |||||||| |||||||||    
T  26624723 accaggggcggtttcaccgcccggcaaccccgggcggtcgcctgggctcgat 26624774  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 331
Target Start/End: Original strand, 33685544 - 33685642
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacctataggcccatttacacactt 331  Q
    ||||||||||||||||||||||||||||| | | ||||| |||||||||||  ||||||   |||||||  ||||||| | | ||||||| ||||||||    
T  33685544 caggggcggtttcaccgcccggcgaccccaggcagtcgctcgggctcgatcgataatttttgcacattaaacccaacccaaaagcccattaacacactt 33685642  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 37002330 - 37002256
Alignment:
Q  234 aggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaa 308  Q
    |||||||||||||||||||||||||||||| ||||||  ||| |||||||  ||||||   |||||||| |||||    
T  37002330 aggggcggtttcaccgcccggcgaccccgggcggtcgttcggtctcgatcgataatttttgcacattagacccaa 37002256  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 43184655 - 43184605
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    |||||||||||||||||||||||||  |||| ||||||| |||||||||||    
T  43184655 caggggcggtttcaccgcccggcgattccgggcggtcgctcgggctcgatc 43184605  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 283
Target Start/End: Original strand, 36630816 - 36630846
Alignment:
Q  253 ggcgaccccggacggtcgcccgggctcgatc 283  Q
    |||||||||||||||||||||||||||||||    
T  36630816 ggcgaccccggacggtcgcccgggctcgatc 36630846  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 328
Target Start/End: Complemental strand, 3114260 - 3114188
Alignment:
Q  256 gaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacctataggcccatttacaca 328  Q
    ||||||||||||||||||||||||||||  ||||||   |||||||| | ||||| | | ||||||| |||||    
T  3114260 gaccccggacggtcgcccgggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacaca 3114188  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 36658173 - 36658205
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggac 265  Q
    |||||||||||||||||||| ||||||||||||    
T  36658173 caggggcggtttcaccgcccagcgaccccggac 36658205  T

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Target: scaffold0012 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 246 - 390
Target Start/End: Original strand, 194021 - 194166
Alignment:
Q  246 accgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacctataggcccatttacacacttc-nnnnnnnnnntt 344  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||                 
T  194021 accgcccggcgaccccgggcggtcgcccgggctcgatccgtaatttcctcacattaggcccaacctataggcccatttacacacttcaaaaaaaaaaaag 194120  T
Q  345 gggcaaatacatcacacgcatcacaaattcacaacacaaactctct 390  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  194121 gggcaaatacatcacacacatcacaaattcacaacacaaaccctct 194166  T

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Target: scaffold0769 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 235 - 332
Target Start/End: Original strand, 1259 - 1356
Alignment:
Q  235 ggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacctataggcccatttacacacttc 332  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  1259 ggggcggttttaccgcccggcgaccccgggcggtcgcccgggctcgatccgtaatttcctcacattaggcccaacatataggcccatttacacacttc 1356  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 6723726 - 6723544
Alignment:
Q  36 agagaagacaacaatgttttgtgaacaaagtactaaaagctttaagatactttgatacattaaacttaagcatacactacaaatatatagagccaagcca 135  Q
    ||||||||||  || |||||| ||||||||||| ||| |||  |||||| |||||||||||||||| || ||||||||| ||||||||||||||||| ||    
T  6723726 agagaagacagtaaagttttgagaacaaagtac-aaatgct--aagatattttgatacattaaactaaatcatacactataaatatatagagccaagtca 6723630  T
Q  136 taagcttacttgtaagactaaac--ataaaatctgcactaaatctactctaaacactagtcattattacctaagaaccatagacat 219  Q
    |||| ||  |||||||||| |||  ||||||| || | |||||||||||||||||| |||||| ||||||||||||| ||| ||||    
T  6723629 taagtttgtttgtaagactcaacatataaaatttgtattaaatctactctaaacacgagtcatcattacctaagaacaataaacat 6723544  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 331
Target Start/End: Complemental strand, 24698005 - 24697906
Alignment:
Q  232 ccaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacctataggcccatttacacactt 331  Q
    |||| |||||||||||||||||||||||||||||  |||||||||||| |||  ||||||  ||||||||||||||||| | | ||||||| ||||||||    
T  24698005 ccagtggcggtttcaccgcccggcgaccccggacactcgcccgggctcaatcgataattttttcacattaggcccaacccaaaagcccattaacacactt 24697906  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 28996710 - 28996789
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaaccta 312  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||  ||||||   | |||||| |||||||||    
T  28996710 caggggcggtttcaccgcccggcgaccccgggcggtcgcccgagctcgatcgataatttttgcgcattagacccaaccta 28996789  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 13646997 - 13647047
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  13646997 caggggcggtttcaccacccggcgaccccgggcggtcgcccgggctcgatc 13647047  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 34385575 - 34385525
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatc 283  Q
    ||||||||||||||||||||||||||||||| |||| |||| |||||||||    
T  34385575 caggggcggtttcaccgcccggcgaccccgggcggttgccctggctcgatc 34385525  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 18339106 - 18339184
Alignment:
Q  253 ggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacctataggcccatttacacactt 331  Q
    ||||||||||| |||||||||||||||||||  ||||||   |||||||| ||||| ||| | ||| ||| ||||||||    
T  18339106 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacactt 18339184  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 310
Target Start/End: Original strand, 29743262 - 29743340
Alignment:
Q  232 ccaggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacc 310  Q
    |||||||||||||||||| ||| ||| ||||| |||| |||||||||| |||  ||||||   |||||||| |||||||    
T  29743262 ccaggggcggtttcaccgtccgacgatcccgggcggttgcccgggctcaatcgataatttttgcacattagacccaacc 29743340  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 312
Target Start/End: Complemental strand, 31028545 - 31028472
Alignment:
Q  239 cggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaaccta 312  Q
    ||||||||||||||||||||||||  |||| |||||| |||||||  ||||||   ||||||||  ||||||||    
T  31028545 cggtttcaccgcccggcgaccccgagcggttgcccggactcgatcgataatttttgcacattagatccaaccta 31028472  T

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Target: scaffold0168 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 269 - 332
Target Start/End: Original strand, 12702 - 12765
Alignment:
Q  269 cgcccgggctcgatccttaatttcctcacattaggcccaacctataggcccatttacacacttc 332  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  12702 cgcccgggctcgatccgtaatttcctcacattaggcccaacatataggcccatttacacacttc 12765  T

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Target: scaffold0154 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 331
Target Start/End: Original strand, 31460 - 31558
Alignment:
Q  233 caggggcggtttcaccgcccggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacctataggcccatttacacactt 331  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||  ||||||   |||| ||| ||||||| | | ||||||| ||||||||    
T  31460 caggggcggtttcatcgcccggcgaccccagacggtcgcccgggctcgatcgataatttttgcacactagacccaacccaaaagcccattaacacactt 31558  T

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Target: scaffold0502 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 5230 - 5308
Alignment:
Q  253 ggcgaccccggacggtcgcccgggctcgatccttaatttcctcacattaggcccaacctataggcccatttacacactt 331  Q
    ||||||||||| |||||||||||||||||||  ||||||   |||||||| ||||| ||| | ||| ||| ||||||||    
T  5230 ggcgaccccgggcggtcgcccgggctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacactt 5308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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