View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_high_108 (Length: 288)

Name: NF3772_high_108
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_high_108
NF3772_high_108
[»] chr8 (10 HSPs)
chr8 (54-278)||(22906370-22906594)
chr8 (112-249)||(1039183-1039322)
chr8 (148-249)||(9251386-9251486)
chr8 (148-244)||(37296701-37296798)
chr8 (206-249)||(13770798-13770841)
chr8 (21-58)||(22909965-22910002)
chr8 (246-278)||(1038978-1039010)
chr8 (207-249)||(9555073-9555115)
chr8 (207-249)||(33273710-33273752)
chr8 (209-249)||(22282307-22282347)
[»] chr2 (5 HSPs)
chr2 (128-249)||(5356380-5356500)
chr2 (113-249)||(4959967-4960101)
chr2 (168-249)||(10887036-10887118)
chr2 (207-249)||(15327964-15328006)
chr2 (205-250)||(29568267-29568312)
[»] chr5 (6 HSPs)
chr5 (123-243)||(23166727-23166846)
chr5 (207-250)||(33622695-33622738)
chr5 (209-250)||(5590899-5590940)
chr5 (210-250)||(5931145-5931185)
chr5 (207-249)||(23927284-23927326)
chr5 (209-250)||(24095287-24095328)
[»] chr1 (5 HSPs)
chr1 (113-249)||(15290897-15291033)
chr1 (110-249)||(24107008-24107155)
chr1 (209-249)||(52193395-52193435)
chr1 (207-250)||(21817954-21817997)
chr1 (207-250)||(22186188-22186231)
[»] chr3 (13 HSPs)
chr3 (123-249)||(9860853-9860979)
chr3 (113-249)||(3786393-3786531)
chr3 (168-249)||(3750344-3750422)
chr3 (123-249)||(11578992-11579118)
chr3 (113-249)||(3824086-3824224)
chr3 (207-249)||(15243072-15243114)
chr3 (208-250)||(19773341-19773383)
chr3 (246-278)||(3750138-3750170)
chr3 (209-249)||(16841312-16841352)
chr3 (210-250)||(22006450-22006490)
chr3 (210-250)||(22013967-22014007)
chr3 (123-250)||(44451770-44451896)
chr3 (148-188)||(44808272-44808312)
[»] chr4 (12 HSPs)
chr4 (112-249)||(34845659-34845796)
chr4 (208-250)||(17282692-17282734)
chr4 (205-250)||(25239647-25239692)
chr4 (205-249)||(13033787-13033831)
chr4 (195-250)||(9901904-9901959)
chr4 (208-251)||(13861269-13861312)
chr4 (148-249)||(14332135-14332235)
chr4 (207-249)||(4480067-4480109)
chr4 (209-246)||(27639469-27639506)
chr4 (205-249)||(7865694-7865738)
chr4 (205-249)||(7866858-7866902)
chr4 (210-250)||(12217518-12217558)
[»] chr6 (8 HSPs)
chr6 (112-249)||(6109617-6109748)
chr6 (144-248)||(15933656-15933759)
chr6 (195-250)||(14479937-14479992)
chr6 (207-249)||(7412310-7412352)
chr6 (207-247)||(29095222-29095262)
chr6 (246-277)||(22607888-22607919)
chr6 (208-249)||(12936421-12936462)
chr6 (208-249)||(31344382-31344423)
[»] scaffold0234 (1 HSPs)
scaffold0234 (144-246)||(1073-1175)
[»] chr7 (4 HSPs)
chr7 (123-244)||(11998307-11998427)
chr7 (207-250)||(20093488-20093531)
chr7 (207-250)||(18185579-18185622)
chr7 (207-250)||(21593079-21593122)
[»] scaffold0091 (1 HSPs)
scaffold0091 (113-249)||(811-946)
[»] scaffold0043 (1 HSPs)
scaffold0043 (205-249)||(56798-56842)
[»] scaffold0280 (1 HSPs)
scaffold0280 (207-250)||(1243-1286)
[»] scaffold0265 (1 HSPs)
scaffold0265 (207-250)||(14812-14855)
[»] scaffold0008 (1 HSPs)
scaffold0008 (207-250)||(253267-253310)
[»] scaffold0096 (1 HSPs)
scaffold0096 (208-250)||(11074-11116)
[»] scaffold0777 (1 HSPs)
scaffold0777 (112-200)||(4052-4140)
[»] scaffold0197 (1 HSPs)
scaffold0197 (177-246)||(24358-24427)
[»] scaffold0062 (1 HSPs)
scaffold0062 (210-246)||(10696-10732)
[»] scaffold0023 (1 HSPs)
scaffold0023 (205-249)||(87346-87390)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 54 - 278
Target Start/End: Complemental strand, 22906594 - 22906370
Alignment:
Q  54 tacatggacggtgaaagtaagatggtattaattttcatacaggaagaatatattaatattgatcgtatttgatcaaaaggtgactgccgatgcttcttta 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||    
T  22906594 tacatggacggtgaaagtaagatggtattaattttcatacaggaagaatatattaatattgatcgtatctgatcagaaggtgactgtcgatgcttcttta 22906495  T
Q  154 atgcggtagttgaaggtggtggaaatgcgtcagttgagtactggaacggcggaggggtgtgtacttgaagacactccgacgctcaagtcagtagagacgt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  22906494 atgcggtagttgaaggtggtggaaatgcgtcagttgagtactggaacggcggaggggtgtgtacctgaagacactccgacgctcaagtcagtagagacat 22906395  T
Q  254 tacagttcgtttgaactagtctctg 278  Q
    |||||||||||||||||||| ||||    
T  22906394 tacagttcgtttgaactagtttctg 22906370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 112 - 249
Target Start/End: Complemental strand, 1039322 - 1039183
Alignment:
Q  112 ttgatcgtatttgatcaaaaggtgactgccgatgcttctttaatgcggtagttgaaggtggtggaaatgcgtcagttgagtactggaacgg-cggagggg 210  Q
    |||||||||  |||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||| |||| || || |||||||||||  || ||||    
T  1039322 ttgatcgtacctgatcagaaggtgactgccgatgcttctttaatgcggtggttgaaggtggtgg-aatacgtctgtagaatactggaacggttggtgggg 1039224  T
Q  211 tgt--gtacttgaagacactccgacgctcaagtcagtagag 249  Q
    |||  |||| || | |||||| |||||||||||||||||||    
T  1039223 tgtacgtacctgcaaacactctgacgctcaagtcagtagag 1039183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 9251386 - 9251486
Alignment:
Q  148 tctttaatgcggtagttgaaggtggtggaaatgcgtc-agttgagtactggaacggcggaggggtgtgtacttgaagacactccgacgctcaagtcagta 246  Q
    ||||||||||||| |||||||||||||||| |||||| | |||||| || ||||||||   |||||||||| || |||||||||||||||||||||| ||    
T  9251386 tctttaatgcggtggttgaaggtggtggaagtgcgtcaatttgagtgctagaacggcg--agggtgtgtacctgcagacactccgacgctcaagtcaata 9251483  T
Q  247 gag 249  Q
    |||    
T  9251484 gag 9251486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 244
Target Start/End: Complemental strand, 37296798 - 37296701
Alignment:
Q  148 tctttaatgcggtagttg-aaggtggtggaaatgcgtcag-ttgagtactggaacggcggaggggtgtgtacttgaagacactccgacgctcaagtcag 244  Q
    ||||||||| ||| |||| |||||||||||| | |||||  |||| |||||||||||||||||||||||||| || | |||||||||||||||||||||    
T  37296798 tctttaatgtggtggttgtaaggtggtggaa-tacgtcaacttgaatactggaacggcggaggggtgtgtacatgcatacactccgacgctcaagtcag 37296701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 249
Target Start/End: Complemental strand, 13770841 - 13770798
Alignment:
Q  206 aggggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||    
T  13770841 aggggcgtgtacttgcagacactccgacgctcaagtcagtagag 13770798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 22910002 - 22909965
Alignment:
Q  21 gtaaaatccaattttgacaaccttggttgaagctacat 58  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  22910002 gtaaaatccgattttgacaaccttggttgaagctacat 22909965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 1039010 - 1038978
Alignment:
Q  246 agagacgttacagttcgtttgaactagtctctg 278  Q
    |||||||||||||||||||||||||||||||||    
T  1039010 agagacgttacagttcgtttgaactagtctctg 1038978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 9555115 - 9555073
Alignment:
Q  207 ggggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    ||||||||||| || | ||||||||||||||||||||||||||    
T  9555115 ggggtgtgtacctgcatacactccgacgctcaagtcagtagag 9555073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 33273752 - 33273710
Alignment:
Q  207 ggggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    ||||||||||| || |||||||||||||||||||| |||||||    
T  33273752 ggggtgtgtacctgcagacactccgacgctcaagtaagtagag 33273710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 22282347 - 22282307
Alignment:
Q  209 ggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    ||||||||| || |||||||| |||||||||||||||||||    
T  22282347 ggtgtgtacctgcagacactctgacgctcaagtcagtagag 22282307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 5356380 - 5356500
Alignment:
Q  128 aaaaggtgactgccgatgcttctttaatgcggtagttgaaggtggtggaaatgcgtcagttgagtactggaacggcggaggggtgtgtacttgaagacac 227  Q
    |||||||||||||   |||||||||||||| || ||| |||||| |||||||| ||||||||| |||||||||||||| | || |||||| || ||||||    
T  5356380 aaaaggtgactgcaattgcttctttaatgcagtggttcaaggtgatggaaatgtgtcagttgaatactggaacggcgg-gaggggtgtacctgcagacac 5356478  T
Q  228 tccgacgctcaagtcagtagag 249  Q
    |||||||||| |||||||||||    
T  5356479 tccgacgctccagtcagtagag 5356500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 4959967 - 4960101
Alignment:
Q  113 tgatcgtatttgatcaaaaggtgactgccgatgcttctttaatgcggtagttgaaggtggtggaaatgcgtcagtt-gagtactggaacggcggaggggt 211  Q
    ||||||||  |||||| ||||||| || ||||||| |||||||| ||| ||||  ||||||||||| ||||||||| |||| ||||||| | || |||||    
T  4959967 tgatcgtacctgatcagaaggtgattgtcgatgct-ctttaatgtggtggttgttggtggtggaaacgcgtcagtttgagtgctggaacagggggggggt 4960065  T
Q  212 gtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    ||  || |  |||||||| |||||||||||||||||||    
T  4960066 gt--acctacagacactctgacgctcaagtcagtagag 4960101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 10887118 - 10887036
Alignment:
Q  168 ggtggtggaaatgcgtcagttga-gtactggaacggcggaggggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    ||||||||||||||||||||| | | |||| || ||||| || |||||||| || ||||||||||| ||||||||||||||||    
T  10887118 ggtggtggaaatgcgtcagtttatgcactgaaatggcgggggtgtgtgtacatgcagacactccgatgctcaagtcagtagag 10887036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 15328006 - 15327964
Alignment:
Q  207 ggggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    |||| |||||| || ||||||||||||||||||||||||||||    
T  15328006 ggggggtgtacctgcagacactccgacgctcaagtcagtagag 15327964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 29568267 - 29568312
Alignment:
Q  205 gaggggtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    ||||||||||||| || ||||||||||| |||||||| ||||||||    
T  29568267 gaggggtgtgtacctgcagacactccgatgctcaagtaagtagaga 29568312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 123 - 243
Target Start/End: Original strand, 23166727 - 23166846
Alignment:
Q  123 tgatcaaaaggtgactgccgatgcttctttaatgcggtagttgaaggtggtggaaatgcgtcagttgagtactggaacggcggaggggtgtgtacttgaa 222  Q
    ||||||||||||| |||||  ||||||||||||| ||| |||||||||||||| ||| | |||||||||| |||||| || || |||||||||||||| |    
T  23166727 tgatcaaaaggtggctgcctgtgcttctttaatgtggtggttgaaggtggtgg-aatacttcagttgagtgctggaatggtgggggggtgtgtacttgca 23166825  T
Q  223 gacactccgacgctcaagtca 243  Q
     ||||||| ||||||||||||    
T  23166826 aacactccaacgctcaagtca 23166846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 33622738 - 33622695
Alignment:
Q  207 ggggtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  33622738 ggggtgtgtacttgcagacactccgacgctcaagtcagtagaga 33622695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 5590940 - 5590899
Alignment:
Q  209 ggtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  5590940 ggtgtgtacttgcaggcactccgacgctcaagtcagtagaga 5590899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 5931145 - 5931185
Alignment:
Q  210 gtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  5931145 gtgtgtacctgcagacactccgacgctcaagtcagtagaga 5931185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 23927326 - 23927284
Alignment:
Q  207 ggggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    ||||| ||||| || ||||||||||||||||||||||||||||    
T  23927326 ggggtttgtacctgcagacactccgacgctcaagtcagtagag 23927284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 24095287 - 24095328
Alignment:
Q  209 ggtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    ||||||| | || |||||||||||||||||||||||||||||    
T  24095287 ggtgtgtgcatgcagacactccgacgctcaagtcagtagaga 24095328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 15290897 - 15291033
Alignment:
Q  113 tgatcgtatttgatcaaaaggtgactgccgatgcttctttaatgcggtagttgaaggtggtggaaatgcgtcagttgagtactggaacggcggaggggtg 212  Q
    ||||||||  || ||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||| ||||||||| || ||||||||| | || |||    
T  15290897 tgatcgtacctggtcagaaggtgactgctggtgcttctttaatgcggtggttgaaggtggtggaaatgtgtcagttgattattggaacggcaggggagtg 15290996  T
Q  213 tgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    ||||  || ||||||| ||||  | ||||||||||||    
T  15290997 tgtatctgcagacacttcgacatttaagtcagtagag 15291033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 249
Target Start/End: Complemental strand, 24107155 - 24107008
Alignment:
Q  110 tattgatcgtatttgatcaaaaggtgactgccgatgcttctttaatgcggtagttgaaggtggtggaaatgcgtcagttgagtactggaac--------g 201  Q
    ||||||| |||  |||||| ||||||||| ||  ||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||        |    
T  24107155 tattgattgtacctgatcagaaggtgacttccagtgcttctttaacgcggtggttgaaggtggtggaaatgcgtcagttgagtactgaaacggggggagg 24107056  T
Q  202 gcggaggggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    | || |||| |||||| ||  |||||||||||||||||||||||||||    
T  24107055 gagggggggggtgtacctgctgacactccgacgctcaagtcagtagag 24107008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 52193435 - 52193395
Alignment:
Q  209 ggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  52193435 ggtgtgtacttgcagacactctgacgctcaagtcagtagag 52193395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 21817997 - 21817954
Alignment:
Q  207 ggggtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    |||||||||||||| || |||||||| |||||||||||||||||    
T  21817997 ggggtgtgtacttgcaggcactccgatgctcaagtcagtagaga 21817954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 22186231 - 22186188
Alignment:
Q  207 ggggtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    ||||||||||| || |||||||||||||||||||||| ||||||    
T  22186231 ggggtgtgtacctgcagacactccgacgctcaagtcaatagaga 22186188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 123 - 249
Target Start/End: Complemental strand, 9860979 - 9860853
Alignment:
Q  123 tgatcaaaaggtgactgccgatgcttctttaatgcggtagttgaaggtggtggaaatgcgtcagttgagtactggaacggcggaggggtgtgtacttgaa 222  Q
    |||||| |||||| ||| || |||||||| ||||| || ||||| ||||||||||||  |||||||||||  ||||||| ||  || ||| |||| || |    
T  9860979 tgatcagaaggtggctgtcggtgcttcttcaatgcagtggttgatggtggtggaaatcagtcagttgagtgttggaacgacgagggtgtgagtacgtgta 9860880  T
Q  223 gacactccgacgctcaagtcagtagag 249  Q
    |||||||||||||||||||||||||||    
T  9860879 gacactccgacgctcaagtcagtagag 9860853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 3786393 - 3786531
Alignment:
Q  113 tgatcgtatttgatcaaaaggtgactgccgatgcttctttaatgcggtagttgaaggtggtggaaatgcgtcagtt-gagtactggaacggcgg--aggg 209  Q
    ||||||||  |||||| ||||||| || || |||| ||| |||||||  ||||||||||||||||||||||||||| |   ||| |||||||||  ||||    
T  3786393 tgatcgtacctgatcagaaggtgaatgtcggtgct-cttaaatgcggaggttgaaggtggtggaaatgcgtcagtttgtacactagaacggcggggaggg 3786491  T
Q  210 gtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    | |||||| || ||||||||||||| ||||||||||||||    
T  3786492 gggtgtacctgcagacactccgacggtcaagtcagtagag 3786531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 3750422 - 3750344
Alignment:
Q  168 ggtggtggaaatgcgtcagttgagtactggaacggcggaggggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    |||||||||||||||||||||||||||| ||||||||  | |||   |||||| ||||||| ||||||||||||||||||||    
T  3750422 ggtggtggaaatgcgtcagttgagtactagaacggcgaggtggt---tacttgcagacacttcgacgctcaagtcagtagag 3750344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 249
Target Start/End: Complemental strand, 11579118 - 11578992
Alignment:
Q  123 tgatcaaaaggtgactgccgatgcttctttaatgcggtagttgaaggtggtggaaatgcgtcag-ttgagtactggaacggcggaggggtgtgtacttga 221  Q
    |||||| ||||||| || || |||| |||||||| ||  ||||  ||||||||||||||||||  ||||||| ||||  | ||| || |||||||||||     
T  11579118 tgatcagaaggtgaatgtcggtgct-ctttaatgtggcggttgctggtggtggaaatgcgtcaacttgagtattggattgacgggggtgtgtgtacttgc 11579020  T
Q  222 agacactccgacgctcaagtcagtagag 249  Q
    ||||||| |||||||||||||| |||||    
T  11579019 agacacttcgacgctcaagtcaatagag 11578992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 3824086 - 3824224
Alignment:
Q  113 tgatcgtatttgatcaaaaggtgactgccgatgcttctttaatgcggtagttgaaggtggtggaaatgcgtcagtt-gagtactggaacggcgg--aggg 209  Q
    ||||||||  |||||| ||||||| || || |||| ||| |||| ||  ||||||||||||||||||| ||||||| |   ||| |||||| ||  ||||    
T  3824086 tgatcgtacctgatcagaaggtgaatgtcggtgct-cttaaatgaggaggttgaaggtggtggaaatgtgtcagtttgtacactagaacggtggggaggg 3824184  T
Q  210 gtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    | |||||| || ||||||||||||| ||||||||||||||    
T  3824185 gggtgtacctgcagacactccgacggtcaagtcagtagag 3824224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 15243114 - 15243072
Alignment:
Q  207 ggggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    ||||||||||| || |||||||||||||||||||| |||||||    
T  15243114 ggggtgtgtacctgcagacactccgacgctcaagtaagtagag 15243072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 250
Target Start/End: Original strand, 19773341 - 19773383
Alignment:
Q  208 gggtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    |||||||||| || |||||||| ||||||||||||||||||||    
T  19773341 gggtgtgtacctgcagacactcagacgctcaagtcagtagaga 19773383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 3750170 - 3750138
Alignment:
Q  246 agagacgttacagttcgtttgaactagtctctg 278  Q
    |||||||||||||||||||| ||||||||||||    
T  3750170 agagacgttacagttcgttttaactagtctctg 3750138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Complemental strand, 16841352 - 16841312
Alignment:
Q  209 ggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    ||||||||| |  ||||||||||||||||||||||||||||    
T  16841352 ggtgtgtacctacagacactccgacgctcaagtcagtagag 16841312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 22006450 - 22006490
Alignment:
Q  210 gtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    |||||||| || ||||||||||||||| |||||||||||||    
T  22006450 gtgtgtacctgcagacactccgacgctgaagtcagtagaga 22006490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 22013967 - 22014007
Alignment:
Q  210 gtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    |||||||| || ||||||||||||||| |||||||||||||    
T  22013967 gtgtgtacctgcagacactccgacgctgaagtcagtagaga 22014007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 250
Target Start/End: Complemental strand, 44451896 - 44451770
Alignment:
Q  123 tgatcaaaaggtgactgccgatgcttctttaatgcggtagttgaaggtggtggaaatgcgtcagtt-gagtactggaacggcggaggggtgtgtacttga 221  Q
    |||||| |||||||||| || | || ||||||||| || ||||  ||||||| ||||| ||||||| ||||||||||| |||||| | |||||||| ||     
T  44451896 tgatcagaaggtgactgtcggtact-ctttaatgcagtggttgctggtggtgaaaatgtgtcagtttgagtactggaatggcgga-gtgtgtgtacctgc 44451799  T
Q  222 agacactccgacgctcaagtcagtagaga 250  Q
    | |||||  || ||||||||||| |||||    
T  44451798 aaacacttggatgctcaagtcagcagaga 44451770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 44808312 - 44808272
Alignment:
Q  148 tctttaatgcggtagttgaaggtggtggaaatgcgtcagtt 188  Q
    |||| |||| ||| |||||||||||||||||||||||||||    
T  44808312 tcttaaatgtggtggttgaaggtggtggaaatgcgtcagtt 44808272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 249
Target Start/End: Complemental strand, 34845796 - 34845659
Alignment:
Q  112 ttgatcgtatttgatcaaaaggtgactgccgatgcttctttaatgcggtagttgaaggtggtggaaatgcgtcagttgagtactggaacggcggaggggt 211  Q
    ||||||| || |||||| ||||||||||| | || ||||||||||| |  |||||||||||||||||  |||||| |||||||| ||||||||  || ||    
T  34845796 ttgatcgaatctgatcagaaggtgactgctggtgtttctttaatgcagaggttgaaggtggtggaaacacgtcagatgagtactagaacggcgagggtgt 34845697  T
Q  212 gtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    |||||| || | ||| || ||||||||||| |||||||    
T  34845696 gtgtacctgcaaacaatcagacgctcaagttagtagag 34845659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 17282734 - 17282692
Alignment:
Q  208 gggtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    ||||||||||||| || ||||||||||||||||||||||||||    
T  17282734 gggtgtgtacttgcagccactccgacgctcaagtcagtagaga 17282692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 250
Target Start/End: Original strand, 25239647 - 25239692
Alignment:
Q  205 gaggggtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    ||||||||||||| |  |||||||||||||||||||||||||||||    
T  25239647 gaggggtgtgtacctacagacactccgacgctcaagtcagtagaga 25239692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 13033831 - 13033787
Alignment:
Q  205 gaggggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    ||||||||||||| || |||||||| |||||||||||||||||||    
T  13033831 gaggggtgtgtacctgcagacactctgacgctcaagtcagtagag 13033787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 9901959 - 9901904
Alignment:
Q  195 tggaacggcggaggggtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    |||||||| ||  ||| |||||| || |||||||||||||||||||||||||||||    
T  9901959 tggaacggggggtgggggtgtacctgcagacactccgacgctcaagtcagtagaga 9901904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 13861269 - 13861312
Alignment:
Q  208 gggtgtgtacttgaagacactccgacgctcaagtcagtagagac 251  Q
    |||||||||| || || |||||||||||||||||||||||||||    
T  13861269 gggtgtgtacctgcaggcactccgacgctcaagtcagtagagac 13861312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 249
Target Start/End: Complemental strand, 14332235 - 14332135
Alignment:
Q  148 tctttaatgcggtagttgaaggtggtggaaatgcgtcagtt-gagtactggaacggcggaggggtgtgtacttgaagacactccgacgctcaagtcagta 246  Q
    |||||||||||||  |||| | | ||||||||| ||||||| || |||||||| |||  ||| |||||||| |  ||||||||||||||| |||||||||    
T  14332235 tctttaatgcggtgattgatgatagtggaaatgtgtcagtttgaatactggaatggc--aggagtgtgtacctacagacactccgacgcttaagtcagta 14332138  T
Q  247 gag 249  Q
    |||    
T  14332137 gag 14332135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 4480067 - 4480109
Alignment:
Q  207 ggggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    ||||||||||| || |||||||||||||||||||| |||||||    
T  4480067 ggggtgtgtacctgtagacactccgacgctcaagttagtagag 4480109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 246
Target Start/End: Original strand, 27639469 - 27639506
Alignment:
Q  209 ggtgtgtacttgaagacactccgacgctcaagtcagta 246  Q
    |||||||||||| |||||| ||||||||||||||||||    
T  27639469 ggtgtgtacttgcagacaccccgacgctcaagtcagta 27639506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 7865738 - 7865694
Alignment:
Q  205 gaggggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    ||||||||||||| || |||||||| || ||||||||||||||||    
T  7865738 gaggggtgtgtacctgcagacactctgaagctcaagtcagtagag 7865694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 7866902 - 7866858
Alignment:
Q  205 gaggggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    ||||||||||||| || |||||||| || ||||||||||||||||    
T  7866902 gaggggtgtgtacctgcagacactctgaagctcaagtcagtagag 7866858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 12217518 - 12217558
Alignment:
Q  210 gtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    |||||||| || ||||||| |||||||||||||||||||||    
T  12217518 gtgtgtacctgcagacacttcgacgctcaagtcagtagaga 12217558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 112 - 249
Target Start/End: Complemental strand, 6109748 - 6109617
Alignment:
Q  112 ttgatcgtatttgatcaaaaggtgactgccgatgcttctttaatgcggtagttgaaggtggtggaaatgcgtcagttgagtactggaacggcggaggggt 211  Q
    |||||||||| |||||| |||||| ||| || ||||||||||| | ||| ||| |||||||||||||| |||||||||| |||||||||    ||||||     
T  6109748 ttgatcgtatctgatcagaaggtgtctgtcggtgcttctttaaagtggtggttaaaggtggtggaaatacgtcagttgaatactggaac----gagggg- 6109654  T
Q  212 gtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    ||||| |   ||||||||||||||||||||||||||||    
T  6109653 gtgta-tctcagacactccgacgctcaagtcagtagag 6109617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 248
Target Start/End: Complemental strand, 15933759 - 15933656
Alignment:
Q  144 tgcttctttaatgcggtagttgaaggtggtggaaatgcgtcagttgagtactggaacggcggaggggtgtgtacttgaagacactccgacgctcaagtca 243  Q
    ||||||||||||||||| ||||||||||||||||||| || || ||| |||| ||||||| ||| | ||||||| || ||| ||| |||||||||||| |    
T  15933759 tgcttctttaatgcggtggttgaaggtggtggaaatgtgttagctgaatactagaacggc-gagtgatgtgtacctgcagatacttcgacgctcaagtta 15933661  T
Q  244 gtaga 248  Q
    |||||    
T  15933660 gtaga 15933656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 14479937 - 14479992
Alignment:
Q  195 tggaacggcggaggggtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    ||||||||||| ||||||||||| || || |||||||||||| |||||||||||||    
T  14479937 tggaacggcgggggggtgtgtacctgcaggcactccgacgctgaagtcagtagaga 14479992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 7412310 - 7412352
Alignment:
Q  207 ggggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  7412310 ggggtgtgtacctgcagacactccgacgctcaagtcagtagag 7412352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 29095262 - 29095222
Alignment:
Q  207 ggggtgtgtacttgaagacactccgacgctcaagtcagtag 247  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  29095262 ggggtgtgtacctgcagacactccgacgctcaagtcagtag 29095222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 246 - 277
Target Start/End: Original strand, 22607888 - 22607919
Alignment:
Q  246 agagacgttacagttcgtttgaactagtctct 277  Q
    ||||||||||||||||||||||||||||||||    
T  22607888 agagacgttacagttcgtttgaactagtctct 22607919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 12936462 - 12936421
Alignment:
Q  208 gggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    ||||||| ||||| |||||||||||||||||||| |||||||    
T  12936462 gggtgtgcacttgcagacactccgacgctcaagttagtagag 12936421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 249
Target Start/End: Complemental strand, 31344423 - 31344382
Alignment:
Q  208 gggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    |||||||||| || | ||||||||||||||||||||||||||    
T  31344423 gggtgtgtacatgcatacactccgacgctcaagtcagtagag 31344382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0234 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0234
Description:

Target: scaffold0234; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 246
Target Start/End: Complemental strand, 1175 - 1073
Alignment:
Q  144 tgcttctttaatgcggtagttgaaggtggtggaaatgcgtcagttgagtactggaacggcggaggggtgtgtacttgaagacactccgacgctcaagtca 243  Q
    ||||||||||||||||| ||||| ||||||| || |||| || |||| |||||||||||| | || ||||||||||| ||||||||| ||| |||||| |    
T  1175 tgcttctttaatgcggtggttgatggtggtgaaagtgcgccatttgattactggaacggcaggggagtgtgtacttgcagacactccaacgttcaagtta 1076  T
Q  244 gta 246  Q
    |||    
T  1075 gta 1073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 123 - 244
Target Start/End: Complemental strand, 11998427 - 11998307
Alignment:
Q  123 tgatcaaaaggtgactgccgatgcttctttaatgcggtagttgaaggtggtggaaatgcgtcag-ttgagtactggaacggcggaggggtgtgtacttga 221  Q
    |||||| |||||||||| || | || |||||||||||| ||||  |||| |||||||||||||| ||||||||||||| |||||| | |||||||| ||     
T  11998427 tgatcagaaggtgactgtcggtact-ctttaatgcggtggttgctggtgatggaaatgcgtcagtttgagtactggaatggcgga-gtgtgtgtacctgt 11998330  T
Q  222 agacactccgacgctcaagtcag 244  Q
    |||||||| ||||||||||||||    
T  11998329 agacactctgacgctcaagtcag 11998307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 20093488 - 20093531
Alignment:
Q  207 ggggtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    ||||||||||| || |||||||||||||||||||||||||||||    
T  20093488 ggggtgtgtacctgtagacactccgacgctcaagtcagtagaga 20093531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 18185579 - 18185622
Alignment:
Q  207 ggggtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    ||||||||||| || || ||||||||||||||||||||||||||    
T  18185579 ggggtgtgtacctgcaggcactccgacgctcaagtcagtagaga 18185622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 21593122 - 21593079
Alignment:
Q  207 ggggtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    |||||||||||||| || |||||||| |||||||||||||||||    
T  21593122 ggggtgtgtacttgcaggcactccgaagctcaagtcagtagaga 21593079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 811 - 946
Alignment:
Q  113 tgatcgtatttgatcaaaaggtgactgccgatgcttctttaatgcggtagttgaaggtggtggaaatgcgtcagttga-gtactggaacggcggaggggt 211  Q
    |||||||||||||||| ||||||| || || ||||  ||||||| ||| |||   ||||||||||||||||||||| | | | ||||||||||| ||||     
T  811 tgatcgtatttgatcagaaggtgattgtcggtgcta-tttaatgtggtggttattggtggtggaaatgcgtcagtttatgaattggaacggcgg-ggggc 908  T
Q  212 gtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    |||||| || |||||||||||||||||||| |||||||    
T  909 gtgtacctgcagacactccgacgctcaagtaagtagag 946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 56842 - 56798
Alignment:
Q  205 gaggggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    ||||||||||||| || ||||||| ||||||||||||||||||||    
T  56842 gaggggtgtgtacctgcagacacttcgacgctcaagtcagtagag 56798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 1286 - 1243
Alignment:
Q  207 ggggtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    ||||||||||| || || ||||||||||||||||||||||||||    
T  1286 ggggtgtgtacctgcaggcactccgacgctcaagtcagtagaga 1243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 14812 - 14855
Alignment:
Q  207 ggggtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    |||||||||||||| || |||||||| |||||||||||||||||    
T  14812 ggggtgtgtacttgcaggcactccgatgctcaagtcagtagaga 14855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 250
Target Start/End: Original strand, 253267 - 253310
Alignment:
Q  207 ggggtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    ||||||||||| || |||||||||||||||||||| ||||||||    
T  253267 ggggtgtgtacctgcagacactccgacgctcaagtaagtagaga 253310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 11116 - 11074
Alignment:
Q  208 gggtgtgtacttgaagacactccgacgctcaagtcagtagaga 250  Q
    |||||||||| || || ||||||||||||||||||||||||||    
T  11116 gggtgtgtacctgcaggcactccgacgctcaagtcagtagaga 11074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 4052 - 4140
Alignment:
Q  112 ttgatcgtatttgatcaaaaggtgactgccgatgcttctttaatgcggtagttgaaggtggtggaaatgcgtcag-ttgagtactggaac 200  Q
    |||||||||  |||| ||||||||||||||| | | |||||||||  || ||||  ||||||||||||| ||||| ||||||||||||||    
T  4052 ttgatcgtacctgattaaaaggtgactgccggtac-tctttaatgaagtggttgctggtggtggaaatgtgtcagtttgagtactggaac 4140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 246
Target Start/End: Complemental strand, 24427 - 24358
Alignment:
Q  177 aatgcgtcagttgagtactggaacggcggaggggtgtgtacttgaagacactccgacgctcaagtcagta 246  Q
    |||| |||||||||  || |||||| ||||||||||||| | || |||||||| ||| ||||||||||||    
T  24427 aatgtgtcagttgataaccggaacgacggaggggtgtgtgcatgcagacactctgacactcaagtcagta 24358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 246
Target Start/End: Complemental strand, 10732 - 10696
Alignment:
Q  210 gtgtgtacttgaagacactccgacgctcaagtcagta 246  Q
    |||||||| || |||||||||||||||||||||||||    
T  10732 gtgtgtacctgtagacactccgacgctcaagtcagta 10696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 87346 - 87390
Alignment:
Q  205 gaggggtgtgtacttgaagacactccgacgctcaagtcagtagag 249  Q
    ||||||||||||| || | |||||||||||||||||| |||||||    
T  87346 gaggggtgtgtacctgcaaacactccgacgctcaagttagtagag 87390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University