View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_high_11 (Length: 600)

Name: NF3772_high_11
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_high_11
NF3772_high_11
[»] chr7 (7 HSPs)
chr7 (381-460)||(37162797-37162876)
chr7 (385-459)||(12633031-12633105)
chr7 (395-459)||(12632493-12632557)
chr7 (525-569)||(12632924-12632968)
chr7 (22-61)||(16701018-16701057)
chr7 (22-61)||(17675254-17675293)
chr7 (275-306)||(35427028-35427059)
[»] chr5 (6 HSPs)
chr5 (385-460)||(17511924-17511999)
chr5 (395-459)||(17515547-17515611)
chr5 (525-592)||(17512062-17512129)
chr5 (395-449)||(21044619-21044673)
chr5 (395-460)||(21045082-21045147)
chr5 (395-457)||(8705764-8705826)
[»] chr2 (2 HSPs)
chr2 (385-460)||(8151560-8151631)
chr2 (525-591)||(8151698-8151764)
[»] chr6 (3 HSPs)
chr6 (395-460)||(12142954-12143019)
chr6 (395-460)||(12142109-12142174)
chr6 (406-449)||(12143531-12143574)
[»] scaffold0133 (1 HSPs)
scaffold0133 (395-460)||(10034-10099)
[»] chr8 (2 HSPs)
chr8 (189-238)||(3047871-3047922)
chr8 (151-205)||(32304941-32304995)


Alignment Details
Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 381 - 460
Target Start/End: Original strand, 37162797 - 37162876
Alignment:
Q  381 ggactgcaattacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 460  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  37162797 ggactgcacttacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccatgtattgcttcttttt 37162876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 385 - 459
Target Start/End: Complemental strand, 12633105 - 12633031
Alignment:
Q  385 tgcaattacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttctttt 459  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12633105 tgcacttacgtaacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacatgttgcttctttt 12633031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 395 - 459
Target Start/End: Original strand, 12632493 - 12632557
Alignment:
Q  395 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttctttt 459  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  12632493 taacattgtggcgggctatgtcacatgacatagcaaataaaattgtgccacgtgttgcttctttt 12632557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 525 - 569
Target Start/End: Complemental strand, 12632968 - 12632924
Alignment:
Q  525 cttcttctccttcaaaacgtgttatgctttccctcacttctccct 569  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||    
T  12632968 cttcttctccttcaaaacgcgttctgcgttccctcacttctccct 12632924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 16701018 - 16701057
Alignment:
Q  22 aatattgtacggtttcttgtgagcatcttgcaattgaatc 61  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  16701018 aatattttacggtttcttgtgagcatcttgcatttgaatc 16701057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 17675254 - 17675293
Alignment:
Q  22 aatattgtacggtttcttgtgagcatcttgcaattgaatc 61  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  17675254 aatattttacggtttcttgtgagcatcttgcatttgaatc 17675293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 306
Target Start/End: Complemental strand, 35427059 - 35427028
Alignment:
Q  275 ttgttgcattgtgacttttctattacttctag 306  Q
    ||||||||||||||||||||||||||||||||    
T  35427059 ttgttgcattgtgacttttctattacttctag 35427028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 385 - 460
Target Start/End: Original strand, 17511924 - 17511999
Alignment:
Q  385 tgcaattacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 460  Q
    |||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  17511924 tgcacttacgtaacattgtggcgggctatgtcacatggcatagccagtaaaattgtgccacatgttgcttcttttt 17511999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 395 - 459
Target Start/End: Complemental strand, 17515611 - 17515547
Alignment:
Q  395 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttctttt 459  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  17515611 taacattgtggcgggctatgtcacatgacatagcaagtaaaattgtgccacatgttgcttctttt 17515547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 525 - 592
Target Start/End: Original strand, 17512062 - 17512129
Alignment:
Q  525 cttcttctccttcaaaacgtgttatgctttccctcacttctcccttgcttcacttctccctatgctac 592  Q
    |||||||||||| |||||| |||  || ||||||||||||||||||||||||||||||||| ||||||    
T  17512062 cttcttctcctttaaaacgcgttcggcgttccctcacttctcccttgcttcacttctccctgtgctac 17512129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 395 - 449
Target Start/End: Original strand, 21044619 - 21044673
Alignment:
Q  395 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgt 449  Q
    |||||||||||||||||||||||||||||||||| ||||| |||| |||||||||    
T  21044619 taacattgtggcgggctatgtcacatgacatagctagtaatattgcgccacgtgt 21044673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 395 - 460
Target Start/End: Complemental strand, 21045147 - 21045082
Alignment:
Q  395 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 460  Q
    |||||||||||||||||||||||||||||||||||||||| |||  |||| ||||  |||||||||    
T  21045147 taacattgtggcgggctatgtcacatgacatagccagtaacatttcgccatgtgtcacttcttttt 21045082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 395 - 457
Target Start/End: Original strand, 8705764 - 8705826
Alignment:
Q  395 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttctt 457  Q
    |||||||  |||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||    
T  8705764 taacattccggcgggctatctcacatgacatagcgagtaatattgtaccacgtgttgcttctt 8705826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 385 - 460
Target Start/End: Original strand, 8151560 - 8151631
Alignment:
Q  385 tgcaattacataacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 460  Q
    |||| |||| |||||||||||||||||||||||||||||||    ||||| |||||||||||||||||||||||||    
T  8151560 tgcacttacgtaacattgtggcgggctatgtcacatgacat----agtaagattgtgccacgtgttgcttcttttt 8151631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 525 - 591
Target Start/End: Original strand, 8151698 - 8151764
Alignment:
Q  525 cttcttctccttcaaaacgtgttatgctttccctcacttctcccttgcttcacttctccctatgcta 591  Q
    ||||||||||||||||||| |||  || |||||||| |||||||||||||||||||||||| |||||    
T  8151698 cttcttctccttcaaaacgcgttcggcgttccctcatttctcccttgcttcacttctccctgtgcta 8151764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 395 - 460
Target Start/End: Original strand, 12142954 - 12143019
Alignment:
Q  395 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 460  Q
    |||||| |||||||||||||| |||||||||||||||||| ||||||||||||||  |||||||||    
T  12142954 taacatagtggcgggctatgttacatgacatagccagtaatattgtgccacgtgtcacttcttttt 12143019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 395 - 460
Target Start/End: Original strand, 12142109 - 12142174
Alignment:
Q  395 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 460  Q
    |||||| |||||||||||||| |||||||||||||||||| |||||||||| |||  |||||||||    
T  12142109 taacatagtggcgggctatgttacatgacatagccagtaatattgtgccacatgtcacttcttttt 12142174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 406 - 449
Target Start/End: Complemental strand, 12143574 - 12143531
Alignment:
Q  406 cgggctatgtcacatgacatagccagtaaaattgtgccacgtgt 449  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||    
T  12143574 cgggctatgtcacatgacatagccaataatattgtgccacgtgt 12143531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 460
Target Start/End: Complemental strand, 10099 - 10034
Alignment:
Q  395 taacattgtggcgggctatgtcacatgacatagccagtaaaattgtgccacgtgttgcttcttttt 460  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||  ||| ||||  |||||||||    
T  10099 taacattgtggtgggctatgtcacatgacatagccagtaatattgcaccatgtgtcacttcttttt 10034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 3047871 - 3047922
Alignment:
Q  189 tgtacaatatgatgtaa--gtttcagttttcattttgaaattgacagtgtaa 238  Q
    |||||||||||||||||  ||||||||||||||||||||||||||| |||||    
T  3047871 tgtacaatatgatgtaaaagtttcagttttcattttgaaattgacaatgtaa 3047922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 32304941 - 32304995
Alignment:
Q  151 aaatttgcattccactaaaattagcattcggatatatttgtacaatatgatgtaa 205  Q
    |||||||||| |||||||||||| |||| |||||| |||||||| ||||||||||    
T  32304941 aaatttgcatcccactaaaattaccatttggatatttttgtacattatgatgtaa 32304995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University