View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_112 (Length: 280)
Name: NF3772_high_112
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_112 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 39425922 - 39425671
Alignment:
| Q |
20 |
ttattaaccattttcttacgtttcgttccccgtttcgtttccaaaactgaactctgtttcgttgctcccataaccaccatggaaggaggcggtggaacgt |
119 |
Q |
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| T |
39425922 |
ttattaaccattttcttacgtttcgttccccgtttcgtttccaaaactgaactctgtttcgttgctcccataaccaccatggaaggaggcggtggaacgt |
39425823 |
T |
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| Q |
120 |
tatcggagattcaccaaaccgccagaaagcttcttctccgaacacgtgacggactcgaacgtctcgaacgccttgaatattccaactcatcttcctcctc |
219 |
Q |
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| T |
39425822 |
tttcggagattcaccaaaccgccagaaagcttcttctccgaacacgtgacggactcgaacgtctcgaacgccttgaatattccaactcatcttcctcctc |
39425723 |
T |
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| Q |
220 |
cgatctctccttcgccgttagcaaagacatcactcagatccaatccctatgc |
271 |
Q |
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| T |
39425722 |
cgatctctccttcgccgttagcaaagacatcactcagatccaatccctatgc |
39425671 |
T |
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