View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3772_high_115 (Length: 277)

Name: NF3772_high_115
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3772_high_115
NF3772_high_115
[»] chr7 (4 HSPs)
chr7 (115-256)||(17490784-17490930)
chr7 (115-256)||(17562284-17562430)
chr7 (27-90)||(17490931-17490994)
chr7 (27-90)||(17562220-17562283)
[»] chr4 (4 HSPs)
chr4 (23-140)||(1917815-1917928)
chr4 (159-256)||(53650995-53651088)
chr4 (33-87)||(1871841-1871895)
chr4 (220-256)||(33959844-33959880)


Alignment Details
Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 115 - 256
Target Start/End: Complemental strand, 17490930 - 17490784
Alignment:
Q  115 ccttgcatatgttttactagcttcttaaggctgagattaaaaatt---------caatcatctaatgaaatctcactcaattacttactttcacgcattc 205  Q
    |||||||||||| ||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||    ||||||||||    
T  17490930 ccttgcatatgtcttactagcttcttaaggctgagattaaaaattaccttgtgtcaatcatctaatgaaatctcactcaattactt----tcacgcattc 17490835  T
Q  206 attctctgcaactcttcttcttccccctcaacatcaatcttctccggcgac 256  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17490834 attctctgcaactcttcttcttccctctcaacatcaatcttctccggcgac 17490784  T

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Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 115 - 256
Target Start/End: Original strand, 17562284 - 17562430
Alignment:
Q  115 ccttgcatatgttttactagcttcttaaggctgagattaaaaatt---------caatcatctaatgaaatctcactcaattacttactttcacgcattc 205  Q
    |||||||||||| ||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||    ||||||||||||    
T  17562284 ccttgcatatgtcttactagcttcttaaggctgagattaaaaattaccttgtgtcaatcatctaatgaaatctcactcaattac----tttcacgcattc 17562379  T
Q  206 attctctgcaactcttcttcttccccctcaacatcaatcttctccggcgac 256  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17562380 attctctgcaactcttcttcttccctctcaacatcaatcttctccggcgac 17562430  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 17490994 - 17490931
Alignment:
Q  27 gagatgttgaaggaactttcagacgttatgggcttaaagaaggttcgtaattaaattaaatata 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17490994 gagatgttgaaggaactttcagacgttatgggcttaaagaaggttcgtaattaaattaaatata 17490931  T

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Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 17562220 - 17562283
Alignment:
Q  27 gagatgttgaaggaactttcagacgttatgggcttaaagaaggttcgtaattaaattaaatata 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17562220 gagatgttgaaggaactttcagacgttatgggcttaaagaaggttcgtaattaaattaaatata 17562283  T

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Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 1917928 - 1917815
Alignment:
Q  23 cacagagatgttgaaggaactttcagacgttatgggcttaaagaaggttcgtaattaaattaaatatatttagttaaattatggtttgattcccttgcat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||| ||||||||    
T  1917928 cacagagatgttgaaggaactttcagacgttatgggcttaaagaaggttcgtaattaaattaaata----tagttaaattatggtttgatttccttgcat 1917833  T
Q  123 atgttttactagcttctt 140  Q
    |||| |||||||||||||    
T  1917832 atgtcttactagcttctt 1917815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 53650995 - 53651088
Alignment:
Q  159 tcaatcatctaatgaaatctcactcaattacttactttcacgcattcattctctgcaactcttcttcttccccctcaacatcaatcttctccggcgac 256  Q
    ||||||||||||| |||||||||||||||||    ||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||    
T  53650995 tcaatcatctaattaaatctcactcaattac----tttcacgcattcattctctgcgactcttccttttccccctcaacatcaatcttctccggcgac 53651088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 1871895 - 1871841
Alignment:
Q  33 ttgaaggaactttcagacgttatgggcttaaagaaggttcgtaattaaattaaat 87  Q
    ||||| ||||||||||| || || ||||||||||||||| |||||||||||||||    
T  1871895 ttgaaagaactttcagatgtcataggcttaaagaaggttggtaattaaattaaat 1871841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 256
Target Start/End: Original strand, 33959844 - 33959880
Alignment:
Q  220 ttcttcttccccctcaacatcaatcttctccggcgac 256  Q
    ||||||||||||||||||||| || ||||||||||||    
T  33959844 ttcttcttccccctcaacatcgatgttctccggcgac 33959880  T

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