View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_120 (Length: 272)
Name: NF3772_high_120
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_120 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 21 - 263
Target Start/End: Original strand, 3898948 - 3899190
Alignment:
| Q |
21 |
gtgatcatcttcattctttctaccttcttcctccttcgaaaggattctcaacgccgcacgaagtggttcgatcgcgttcttgtaagcgacagatagtagg |
120 |
Q |
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| T |
3898948 |
gtgatcatcttcattctttctaccttcttcctccttcgaaaggattctcaacgccgcacgaagtggttcggtcgcgttcttgtaagcgacagatagtagg |
3899047 |
T |
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| Q |
121 |
ttcatctcttccaagctaagctctgaggctggtgtgtaccctacaactatcttctgcatgaaggaaaccatctcctcgtagcgttccgcttgttgtgcta |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3899048 |
ttcatctcttccaagctaagctctgaggctggtgtgtaccctacaactatcttctgcatgaaggaaaccatctcctcgtagcgttccgcttgttgtgcta |
3899147 |
T |
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| Q |
221 |
gttttgcatggaacacatactcttctctccttagtctctctgc |
263 |
Q |
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| T |
3899148 |
gttttgcatggaacacatactcttctctccttagtctctctgc |
3899190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 248
Target Start/End: Complemental strand, 46283293 - 46283103
Alignment:
| Q |
58 |
gaaaggattctcaacgccgcacgaagtggttcgatcgcgttcttgtaagcgacagatagtaggttcatctcttccaagctaagctctgaggctggtgtgt |
157 |
Q |
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|||| ||||||| |||| ||||| || | | ||||| |||||||||||||||| |||| |||||| ||||||| | |||||||||||| | ||||||| |
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| T |
46283293 |
gaaacgattctccacgcagcacgtagcgatccgatcacgttcttgtaagcgacggatatgaggttcctctcttcgacgctaagctctgatgatggtgtgg |
46283194 |
T |
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| Q |
158 |
accctacaactatcttctgcatgaaggaaaccatctcctcgtagcgttccgcttgttgtgctagttttgcatggaacacatactcttctct |
248 |
Q |
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| T |
46283193 |
accccactacaagcttctgcatgaaggagaccatctcctcgtagcgttcagcttgttctgcgagttttgctaggtacacatactgttctct |
46283103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 21 - 263
Target Start/End: Original strand, 5279 - 5521
Alignment:
| Q |
21 |
gtgatcatcttcattctttctaccttcttcctccttcgaaaggattctcaacgccgcacgaagtggttcgatcgcgttcttgtaagcgacagatagtagg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5279 |
gtgatcatcttcattctttctaccttcttcctcctttgaaaggattctcaacgccgcacgaagtggttcggtcgcgttcttgtaagcgacagatagtagg |
5378 |
T |
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| Q |
121 |
ttcatctcttccaagctaagctctgaggctggtgtgtaccctacaactatcttctgcatgaaggaaaccatctcctcgtagcgttccgcttgttgtgcta |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5379 |
ttcatctcttccaagctaagctctgaggctggtgtgtaccctacaactatcttctgcatgaaggaaaccatctcctcgtagcgttccgcttgttgtgcta |
5478 |
T |
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| Q |
221 |
gttttgcatggaacacatactcttctctccttagtctctctgc |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5479 |
gttttgcatggaacacatactcttctctccttagtctctctgc |
5521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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