View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3772_high_125 (Length: 267)
Name: NF3772_high_125
Description: NF3772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3772_high_125 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 72 - 263
Target Start/End: Complemental strand, 41170550 - 41170359
Alignment:
| Q |
72 |
tgtttaagagtaaagtccaaatacattaatcggtgactttattccaggagcttcccctgccataactctaaccatgataccatctttcgtagcttctact |
171 |
Q |
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| T |
41170550 |
tgtttaagagtaaagtccaaatacattaatcggtgactttattccaggagcttccccagccataactctaaccatgaaaccatctttcgtagcttctact |
41170451 |
T |
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| Q |
172 |
atgtccttgcttaaaatttcttggtatcttggttcaatcctaacataaaacatcattacaatttcgcttcataattaagagaataatttacc |
263 |
Q |
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| T |
41170450 |
atgtccttgcttaaaatttcttggtatcttggatcaatcctaacataaaacatcattacaatttcgcttcataattaagaaaataatttacc |
41170359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 41168573 - 41168436
Alignment:
| Q |
103 |
ggtgactttattccaggagcttcccctgccataactctaaccatgataccatctttcgtagcttctactatgtccttgcttaaaatttcttggtatcttg |
202 |
Q |
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| T |
41168573 |
ggtgactttattccaagagcttcccctgcaataactctaaccttgataccatcttttgtagcttctactatgtccttgcttaaaatttcttgatactttg |
41168474 |
T |
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| Q |
203 |
gttcaatcctaacataaaacatcattacaatttcgctt |
240 |
Q |
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| T |
41168473 |
gttcaatcctaacataacacaacattataatttagctt |
41168436 |
T |
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